EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000007817 (Gene tree)
Gene ID: 111227718
Gene Symbol: POP1
Alias: -
Full Name: POP1 homolog%2C ribonuclease P/MRP subunit
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 12555 bases
Position: chrBDQW01000191.1:2204161-2216715
Accession: 111227718
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000010680	POP1	PF06978.11	7.3e-31	1	2
ENSSDUP00000010680	POP1	PF06978.11	7.3e-31	2	2
ENSSDUP00000010680	POPLD	PF08170.12	6.7e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000010877	POP1-201	5573	XM_022753399	ENSSDUP00000010680	989 (aa)	XP_022609120	UPI000BBEFA29

Gene Model

Click here to download ENSSDUG00000007817's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03008	Ribosome biogenesis in eukaryotes	KEGG
sdu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000007817's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000007817	POP1	100	47.081	ENSG00000104356	POP1	100	46.792	Homo_sapiens
ENSSDUG00000007817	POP1	100	82.139	ENSAPOG00000008198	pop1	100	82.139	Acanthochromis_polyacanthus
ENSSDUG00000007817	POP1	100	46.629	ENSAMEG00000000556	POP1	100	46.724	Ailuropoda_melanoleuca
ENSSDUG00000007817	POP1	100	74.498	ENSACIG00000004169	POP1	100	73.112	Amphilophus_citrinellus
ENSSDUG00000007817	POP1	100	82.121	ENSAOCG00000010991	pop1	100	82.121	Amphiprion_ocellaris
ENSSDUG00000007817	POP1	100	73.852	ENSAPEG00000007607	pop1	100	73.852	Amphiprion_percula
ENSSDUG00000007817	POP1	100	83.551	ENSATEG00000024814	POP1	100	83.350	Anabas_testudineus
ENSSDUG00000007817	POP1	93	49.174	ENSAPLG00000014418	POP1	99	48.763	Anas_platyrhynchos
ENSSDUG00000007817	POP1	100	45.880	ENSACAG00000016083	POP1	100	45.131	Anolis_carolinensis
ENSSDUG00000007817	POP1	87	53.913	ENSANAG00000026360	POP1	99	53.913	Aotus_nancymaae
ENSSDUG00000007817	POP1	100	78.953	ENSACLG00000010951	pop1	100	78.370	Astatotilapia_calliptera
ENSSDUG00000007817	POP1	100	57.992	ENSAMXG00000014483	POP1	100	57.715	Astyanax_mexicanus
ENSSDUG00000007817	POP1	100	47.363	ENSBTAG00000012596	POP1	100	47.363	Bos_taurus
ENSSDUG00000007817	POP1	75	31.765	WBGene00015486	C05D11.9	87	31.950	Caenorhabditis_elegans
ENSSDUG00000007817	POP1	100	47.243	ENSCJAG00000015567	POP1	100	46.756	Callithrix_jacchus
ENSSDUG00000007817	POP1	100	47.522	ENSCAFG00000000469	POP1	100	47.522	Canis_familiaris
ENSSDUG00000007817	POP1	100	46.445	ENSCAFG00020026765	POP1	100	46.445	Canis_lupus_dingo
ENSSDUG00000007817	POP1	100	47.037	ENSCHIG00000017066	POP1	100	46.849	Capra_hircus
ENSSDUG00000007817	POP1	100	46.916	ENSTSYG00000003097	POP1	100	46.937	Carlito_syrichta
ENSSDUG00000007817	POP1	100	45.343	ENSCAPG00000007251	POP1	100	44.873	Cavia_aperea
ENSSDUG00000007817	POP1	100	46.270	ENSCPOG00000002901	POP1	100	45.798	Cavia_porcellus
ENSSDUG00000007817	POP1	100	47.660	ENSCCAG00000018939	POP1	100	46.986	Cebus_capucinus
ENSSDUG00000007817	POP1	100	46.617	ENSCATG00000040916	POP1	100	46.321	Cercocebus_atys
ENSSDUG00000007817	POP1	100	47.249	ENSCLAG00000007208	POP1	97	47.249	Chinchilla_lanigera
ENSSDUG00000007817	POP1	91	48.901	ENSCSAG00000012340	POP1	98	48.459	Chlorocebus_sabaeus
ENSSDUG00000007817	POP1	95	46.317	ENSCHOG00000011432	POP1	98	45.976	Choloepus_hoffmanni
ENSSDUG00000007817	POP1	100	48.555	ENSCPBG00000006373	POP1	100	48.329	Chrysemys_picta_bellii
ENSSDUG00000007817	POP1	82	35.628	ENSCING00000008323	-	87	35.223	Ciona_intestinalis
ENSSDUG00000007817	POP1	100	46.881	ENSCANG00000001647	POP1	100	46.516	Colobus_angolensis_palliatus
ENSSDUG00000007817	POP1	100	46.293	ENSCGRG00001017308	Pop1	100	45.750	Cricetulus_griseus_chok1gshd
ENSSDUG00000007817	POP1	100	43.829	ENSCGRG00000010824	Pop1	100	43.162	Cricetulus_griseus_crigri
ENSSDUG00000007817	POP1	100	76.915	ENSCSEG00000008737	POP1	100	76.915	Cynoglossus_semilaevis
ENSSDUG00000007817	POP1	100	72.764	ENSCVAG00000022248	pop1	100	71.315	Cyprinodon_variegatus
ENSSDUG00000007817	POP1	52	53.191	ENSDARG00000102087	pop1	98	52.611	Danio_rerio
ENSSDUG00000007817	POP1	100	44.567	ENSDNOG00000019974	POP1	100	44.628	Dasypus_novemcinctus
ENSSDUG00000007817	POP1	100	40.094	ENSDORG00000015384	Pop1	100	39.546	Dipodomys_ordii
ENSSDUG00000007817	POP1	88	46.587	ENSETEG00000007839	POP1	88	46.587	Echinops_telfairi
ENSSDUG00000007817	POP1	100	47.867	ENSEASG00005003189	POP1	98	47.003	Equus_asinus_asinus
ENSSDUG00000007817	POP1	100	47.962	ENSECAG00000024236	POP1	100	47.098	Equus_caballus
ENSSDUG00000007817	POP1	51	74.026	ENSEEUG00000003050	-	53	77.273	Erinaceus_europaeus
ENSSDUG00000007817	POP1	100	63.764	ENSELUG00000003526	pop1	100	63.463	Esox_lucius
ENSSDUG00000007817	POP1	100	47.388	ENSFCAG00000002168	POP1	100	47.388	Felis_catus
ENSSDUG00000007817	POP1	100	46.496	ENSFALG00000005711	POP1	100	46.408	Ficedula_albicollis
ENSSDUG00000007817	POP1	100	46.604	ENSFDAG00000017068	POP1	100	46.698	Fukomys_damarensis
ENSSDUG00000007817	POP1	100	73.500	ENSFHEG00000019518	pop1	100	72.700	Fundulus_heteroclitus
ENSSDUG00000007817	POP1	100	63.190	ENSGMOG00000000659	POP1	100	63.437	Gadus_morhua
ENSSDUG00000007817	POP1	100	71.717	ENSGAFG00000019770	POP1	100	71.717	Gambusia_affinis
ENSSDUG00000007817	POP1	100	69.639	ENSGACG00000003499	pop1	93	77.628	Gasterosteus_aculeatus
ENSSDUG00000007817	POP1	100	47.992	ENSGAGG00000011737	POP1	98	47.992	Gopherus_agassizii
ENSSDUG00000007817	POP1	100	46.887	ENSGGOG00000003176	POP1	100	46.698	Gorilla_gorilla
ENSSDUG00000007817	POP1	100	79.255	ENSHBUG00000021583	pop1	100	78.471	Haplochromis_burtoni
ENSSDUG00000007817	POP1	100	46.730	ENSHGLG00000006029	POP1	100	46.730	Heterocephalus_glaber_female
ENSSDUG00000007817	POP1	100	46.730	ENSHGLG00100016879	POP1	100	46.730	Heterocephalus_glaber_male
ENSSDUG00000007817	POP1	100	67.446	ENSHCOG00000013888	pop1	100	66.959	Hippocampus_comes
ENSSDUG00000007817	POP1	100	56.606	ENSIPUG00000018336	pop1	100	56.123	Ictalurus_punctatus
ENSSDUG00000007817	POP1	100	46.786	ENSSTOG00000011455	POP1	97	46.786	Ictidomys_tridecemlineatus
ENSSDUG00000007817	POP1	100	45.270	ENSJJAG00000013325	Pop1	100	45.043	Jaculus_jaculus
ENSSDUG00000007817	POP1	100	74.141	ENSKMAG00000001346	POP1	100	74.168	Kryptolebias_marmoratus
ENSSDUG00000007817	POP1	100	69.526	ENSLBEG00000024457	POP1	100	68.813	Labrus_bergylta
ENSSDUG00000007817	POP1	93	50.964	ENSLACG00000012498	POP1	98	50.555	Latimeria_chalumnae
ENSSDUG00000007817	POP1	100	56.027	ENSLOCG00000009817	POP1	100	55.577	Lepisosteus_oculatus
ENSSDUG00000007817	POP1	100	47.092	ENSLAFG00000010770	POP1	100	47.493	Loxodonta_africana
ENSSDUG00000007817	POP1	100	46.987	ENSMFAG00000000347	POP1	100	46.786	Macaca_fascicularis
ENSSDUG00000007817	POP1	100	47.131	ENSMNEG00000036870	POP1	100	46.931	Macaca_nemestrina
ENSSDUG00000007817	POP1	100	46.893	ENSMLEG00000034986	POP1	100	46.692	Mandrillus_leucophaeus
ENSSDUG00000007817	POP1	100	83.653	ENSMAMG00000004040	pop1	100	83.148	Mastacembelus_armatus
ENSSDUG00000007817	POP1	100	79.053	ENSMZEG00005025448	pop1	100	78.370	Maylandia_zebra
ENSSDUG00000007817	POP1	100	45.287	ENSMGAG00000012167	POP1	100	46.204	Meleagris_gallopavo
ENSSDUG00000007817	POP1	100	46.000	ENSMAUG00000017537	Pop1	100	46.190	Mesocricetus_auratus
ENSSDUG00000007817	POP1	100	46.573	ENSMICG00000004361	POP1	100	46.429	Microcebus_murinus
ENSSDUG00000007817	POP1	100	46.418	ENSMOCG00000006356	Pop1	100	46.000	Microtus_ochrogaster
ENSSDUG00000007817	POP1	100	70.505	ENSMMOG00000018242	pop1	100	70.808	Mola_mola
ENSSDUG00000007817	POP1	100	47.092	ENSMODG00000006561	POP1	100	47.186	Monodelphis_domestica
ENSSDUG00000007817	POP1	100	81.130	ENSMALG00000012621	POP1	100	81.130	Monopterus_albus
ENSSDUG00000007817	POP1	100	45.024	MGP_CAROLIEiJ_G0019726	Pop1	100	45.498	Mus_caroli
ENSSDUG00000007817	POP1	100	46.008	ENSMUSG00000022325	Pop1	100	45.619	Mus_musculus
ENSSDUG00000007817	POP1	100	45.299	MGP_PahariEiJ_G0019735	Pop1	100	44.867	Mus_pahari
ENSSDUG00000007817	POP1	100	45.541	MGP_SPRETEiJ_G0020622	Pop1	100	45.152	Mus_spretus
ENSSDUG00000007817	POP1	100	47.170	ENSMPUG00000015250	POP1	100	47.031	Mustela_putorius_furo
ENSSDUG00000007817	POP1	100	44.919	ENSMLUG00000010204	POP1	100	44.444	Myotis_lucifugus
ENSSDUG00000007817	POP1	100	47.147	ENSNGAG00000001582	Pop1	100	47.025	Nannospalax_galili
ENSSDUG00000007817	POP1	100	71.774	ENSNBRG00000002356	pop1	100	71.198	Neolamprologus_brichardi
ENSSDUG00000007817	POP1	100	46.798	ENSNLEG00000002541	POP1	100	46.610	Nomascus_leucogenys
ENSSDUG00000007817	POP1	89	53.973	ENSMEUG00000003118	POP1	92	53.699	Notamacropus_eugenii
ENSSDUG00000007817	POP1	100	46.190	ENSOPRG00000007667	POP1	100	46.095	Ochotona_princeps
ENSSDUG00000007817	POP1	100	46.509	ENSODEG00000003984	POP1	100	46.234	Octodon_degus
ENSSDUG00000007817	POP1	100	79.658	ENSONIG00000016445	pop1	100	78.974	Oreochromis_niloticus
ENSSDUG00000007817	POP1	60	46.047	ENSOANG00000001278	-	94	45.850	Ornithorhynchus_anatinus
ENSSDUG00000007817	POP1	100	45.849	ENSOCUG00000017400	POP1	100	45.865	Oryctolagus_cuniculus
ENSSDUG00000007817	POP1	100	72.407	ENSORLG00000002839	pop1	100	72.205	Oryzias_latipes
ENSSDUG00000007817	POP1	100	66.471	ENSORLG00020022450	POP1	100	65.980	Oryzias_latipes_hni
ENSSDUG00000007817	POP1	100	73.085	ENSORLG00015012746	POP1	100	72.984	Oryzias_latipes_hsok
ENSSDUG00000007817	POP1	100	70.434	ENSOMEG00000006915	pop1	99	70.131	Oryzias_melastigma
ENSSDUG00000007817	POP1	100	47.214	ENSOGAG00000001466	POP1	100	46.975	Otolemur_garnettii
ENSSDUG00000007817	POP1	100	46.987	ENSPPAG00000018410	POP1	100	46.698	Pan_paniscus
ENSSDUG00000007817	POP1	100	46.964	ENSPPRG00000005002	POP1	100	46.964	Panthera_pardus
ENSSDUG00000007817	POP1	100	46.964	ENSPTIG00000016527	POP1	100	46.964	Panthera_tigris_altaica
ENSSDUG00000007817	POP1	100	47.170	ENSPTRG00000020458	POP1	100	46.792	Pan_troglodytes
ENSSDUG00000007817	POP1	100	46.987	ENSPANG00000009704	POP1	100	46.786	Papio_anubis
ENSSDUG00000007817	POP1	100	58.922	ENSPKIG00000016325	POP1	100	58.532	Paramormyrops_kingsleyae
ENSSDUG00000007817	POP1	100	47.909	ENSPSIG00000012343	POP1	100	47.597	Pelodiscus_sinensis
ENSSDUG00000007817	POP1	100	64.286	ENSPMGG00000022253	POP1	100	63.014	Periophthalmus_magnuspinnatus
ENSSDUG00000007817	POP1	99	45.497	ENSPEMG00000023633	Pop1	100	45.173	Peromyscus_maniculatus_bairdii
ENSSDUG00000007817	POP1	91	43.066	ENSPMAG00000003209	POP1	99	42.962	Petromyzon_marinus
ENSSDUG00000007817	POP1	100	46.560	ENSPCIG00000012216	POP1	100	46.234	Phascolarctos_cinereus
ENSSDUG00000007817	POP1	100	71.198	ENSPFOG00000012490	POP1	100	71.198	Poecilia_formosa
ENSSDUG00000007817	POP1	100	70.896	ENSPLAG00000004646	POP1	100	70.896	Poecilia_latipinna
ENSSDUG00000007817	POP1	100	71.429	ENSPMEG00000019592	POP1	100	71.227	Poecilia_mexicana
ENSSDUG00000007817	POP1	100	71.558	ENSPREG00000020951	POP1	100	71.558	Poecilia_reticulata
ENSSDUG00000007817	POP1	100	46.754	ENSPPYG00000018777	POP1	100	46.466	Pongo_abelii
ENSSDUG00000007817	POP1	100	44.068	ENSPCAG00000016662	POP1	100	43.609	Procavia_capensis
ENSSDUG00000007817	POP1	100	45.771	ENSPCOG00000019420	POP1	100	46.045	Propithecus_coquereli
ENSSDUG00000007817	POP1	100	45.619	ENSPVAG00000014468	POP1	100	46.051	Pteropus_vampyrus
ENSSDUG00000007817	POP1	100	73.030	ENSPNYG00000004476	pop1	100	71.746	Pundamilia_nyererei
ENSSDUG00000007817	POP1	100	58.033	ENSPNAG00000000265	pop1	100	57.838	Pygocentrus_nattereri
ENSSDUG00000007817	POP1	100	44.929	ENSRNOG00000005243	Pop1	100	44.023	Rattus_norvegicus
ENSSDUG00000007817	POP1	100	46.711	ENSRBIG00000007996	POP1	100	46.509	Rhinopithecus_bieti
ENSSDUG00000007817	POP1	100	46.711	ENSRROG00000012334	POP1	100	46.509	Rhinopithecus_roxellana
ENSSDUG00000007817	POP1	99	46.711	ENSSBOG00000020830	POP1	100	46.337	Saimiri_boliviensis_boliviensis
ENSSDUG00000007817	POP1	100	47.686	ENSSHAG00000000296	POP1	100	47.037	Sarcophilus_harrisii
ENSSDUG00000007817	POP1	100	59.980	ENSSFOG00015007429	pop1	99	59.681	Scleropages_formosus
ENSSDUG00000007817	POP1	100	76.744	ENSSMAG00000010467	POP1	100	77.397	Scophthalmus_maximus
ENSSDUG00000007817	POP1	100	98.079	ENSSLDG00000012565	POP1	100	98.079	Seriola_lalandi_dorsalis
ENSSDUG00000007817	POP1	100	46.249	ENSSPUG00000003550	-	100	45.964	Sphenodon_punctatus
ENSSDUG00000007817	POP1	100	75.174	ENSSPAG00000014955	pop1	100	74.177	Stegastes_partitus
ENSSDUG00000007817	POP1	100	47.701	ENSSSCG00000006078	POP1	100	47.893	Sus_scrofa
ENSSDUG00000007817	POP1	93	43.852	ENSTGUG00000012011	-	100	43.910	Taeniopygia_guttata
ENSSDUG00000007817	POP1	100	68.907	ENSTRUG00000010856	pop1	100	68.305	Takifugu_rubripes
ENSSDUG00000007817	POP1	95	70.829	ENSTNIG00000013297	pop1	100	69.703	Tetraodon_nigroviridis
ENSSDUG00000007817	POP1	95	45.556	ENSTBEG00000014214	POP1	98	45.171	Tupaia_belangeri
ENSSDUG00000007817	POP1	100	46.321	ENSTTRG00000016071	POP1	100	46.321	Tursiops_truncatus
ENSSDUG00000007817	POP1	99	47.122	ENSUAMG00000017309	POP1	100	47.512	Ursus_americanus
ENSSDUG00000007817	POP1	100	46.103	ENSUMAG00000016952	POP1	100	51.311	Ursus_maritimus
ENSSDUG00000007817	POP1	86	51.418	ENSVPAG00000008278	POP1	82	50.355	Vicugna_pacos
ENSSDUG00000007817	POP1	100	46.395	ENSVVUG00000010994	POP1	100	46.395	Vulpes_vulpes
ENSSDUG00000007817	POP1	100	62.537	ENSXCOG00000017043	POP1	100	62.340	Xiphophorus_couchianus
ENSSDUG00000007817	POP1	100	70.838	ENSXMAG00000002472	POP1	100	70.838	Xiphophorus_maculatus