EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000008151 (Gene tree)
Gene ID: 111218350
Gene Symbol: zgc:101559
Alias: -
Full Name: ras-related protein Rab-33B-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 3231 bases
Position: chrBDQW01000052.1:16579000-16582230
Accession: 111218350
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000011157	MMR_HSR1	PF01926.23	1.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000011366	-	1639	XM_022740611	ENSSDUP00000011157	234 (aa)	XP_022596332	UPI000BBF0472

Gene Model

Click here to download ENSSDUG00000008151's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04140	Autophagy - animal	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000008151's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000008151	zgc:101559	74	47.977	ENSSDUG00000004445	zgc:171927	78	47.977
ENSSDUG00000008151	zgc:101559	74	35.028	ENSSDUG00000006543	RAB29	86	35.028
ENSSDUG00000008151	zgc:101559	68	32.927	ENSSDUG00000022959	rasl11b	66	32.927
ENSSDUG00000008151	zgc:101559	80	50.718	ENSSDUG00000019885	-	86	50.718
ENSSDUG00000008151	zgc:101559	66	40.909	ENSSDUG00000009735	rab25a	73	40.909
ENSSDUG00000008151	zgc:101559	73	40.936	ENSSDUG00000009835	rab5aa	77	40.936
ENSSDUG00000008151	zgc:101559	66	45.161	ENSSDUG00000014091	-	72	45.161
ENSSDUG00000008151	zgc:101559	77	45.304	ENSSDUG00000022535	RAB1A	84	45.304
ENSSDUG00000008151	zgc:101559	70	38.462	ENSSDUG00000008011	-	79	38.462
ENSSDUG00000008151	zgc:101559	65	34.839	ENSSDUG00000005037	-	72	34.839
ENSSDUG00000008151	zgc:101559	71	34.731	ENSSDUG00000017779	kras	90	35.196
ENSSDUG00000008151	zgc:101559	78	39.011	ENSSDUG00000002580	rab11a	84	39.011
ENSSDUG00000008151	zgc:101559	76	46.629	ENSSDUG00000013325	rab30	83	46.629
ENSSDUG00000008151	zgc:101559	65	35.294	ENSSDUG00000009122	rheb	82	35.294
ENSSDUG00000008151	zgc:101559	74	40.462	ENSSDUG00000013724	rab2a	85	40.462
ENSSDUG00000008151	zgc:101559	74	39.884	ENSSDUG00000002934	-	78	39.884
ENSSDUG00000008151	zgc:101559	77	63.158	ENSSDUG00000001791	rab33ba	79	63.158
ENSSDUG00000008151	zgc:101559	64	42.282	ENSSDUG00000018970	RAB6B	70	42.282
ENSSDUG00000008151	zgc:101559	85	33.838	ENSSDUG00000019086	hrasb	97	33.838
ENSSDUG00000008151	zgc:101559	58	34.074	ENSSDUG00000023163	rras2	72	34.014
ENSSDUG00000008151	zgc:101559	69	32.298	ENSSDUG00000010675	si:ch73-116o1.2	78	33.526
ENSSDUG00000008151	zgc:101559	70	33.537	ENSSDUG00000023508	rab23	71	35.135
ENSSDUG00000008151	zgc:101559	53	36.585	ENSSDUG00000017824	-	92	37.226
ENSSDUG00000008151	zgc:101559	50	31.356	ENSSDUG00000010935	arl4d	58	31.356
ENSSDUG00000008151	zgc:101559	74	38.150	ENSSDUG00000006278	rab11al	79	38.150
ENSSDUG00000008151	zgc:101559	74	39.306	ENSSDUG00000002965	rab11ba	79	38.953
ENSSDUG00000008151	zgc:101559	78	39.691	ENSSDUG00000017131	rab22a	96	39.691
ENSSDUG00000008151	zgc:101559	80	36.842	ENSSDUG00000010942	rab34a	69	36.842
ENSSDUG00000008151	zgc:101559	69	42.236	ENSSDUG00000013496	-	76	42.236
ENSSDUG00000008151	zgc:101559	65	39.103	ENSSDUG00000007575	rab9b	76	39.103
ENSSDUG00000008151	zgc:101559	77	44.751	ENSSDUG00000004698	rab1ba	85	44.751
ENSSDUG00000008151	zgc:101559	65	41.290	ENSSDUG00000019738	si:dkey-13a21.4	76	41.290
ENSSDUG00000008151	zgc:101559	71	32.727	ENSSDUG00000006618	RAB17	70	32.727
ENSSDUG00000008151	zgc:101559	80	36.702	ENSSDUG00000011851	rab42a	82	36.702
ENSSDUG00000008151	zgc:101559	79	36.559	ENSSDUG00000009251	rab6bb	87	36.559
ENSSDUG00000008151	zgc:101559	71	39.521	ENSSDUG00000004551	rab14	75	39.521
ENSSDUG00000008151	zgc:101559	63	42.857	ENSSDUG00000005627	rab15	68	42.857
ENSSDUG00000008151	zgc:101559	72	45.562	ENSSDUG00000004950	rab35b	100	39.048
ENSSDUG00000008151	zgc:101559	84	35.714	ENSSDUG00000005960	rab18b	93	35.714
ENSSDUG00000008151	zgc:101559	67	40.127	ENSSDUG00000006260	rab25b	78	40.127
ENSSDUG00000008151	zgc:101559	77	38.251	ENSSDUG00000008505	rab12	74	38.251
ENSSDUG00000008151	zgc:101559	69	39.130	ENSSDUG00000021882	rab6ba	76	39.130
ENSSDUG00000008151	zgc:101559	50	35.897	ENSSDUG00000014765	rabl2	51	35.897
ENSSDUG00000008151	zgc:101559	65	37.255	ENSSDUG00000016858	-	82	37.255
ENSSDUG00000008151	zgc:101559	63	44.898	ENSSDUG00000004633	RAB15	68	44.898
ENSSDUG00000008151	zgc:101559	70	43.902	ENSSDUG00000006307	-	82	44.872
ENSSDUG00000008151	zgc:101559	79	45.699	ENSSDUG00000016888	rab1ab	83	45.699
ENSSDUG00000008151	zgc:101559	71	39.521	ENSSDUG00000013050	-	75	39.521
ENSSDUG00000008151	zgc:101559	73	39.766	ENSSDUG00000023008	rab5c	75	39.766
ENSSDUG00000008151	zgc:101559	73	44.118	ENSSDUG00000005719	si:dkey-16l2.16	85	42.778
ENSSDUG00000008151	zgc:101559	63	40.816	ENSSDUG00000003823	rab18a	71	40.816
ENSSDUG00000008151	zgc:101559	65	34.641	ENSSDUG00000007311	rhebl1	82	34.641
ENSSDUG00000008151	zgc:101559	71	36.047	ENSSDUG00000015078	rasl11a	66	36.047
ENSSDUG00000008151	zgc:101559	95	56.054	ENSSDUG00000013968	rab33a	94	56.054
ENSSDUG00000008151	zgc:101559	81	32.039	ENSSDUG00000004119	rab36	66	32.039
ENSSDUG00000008151	zgc:101559	74	40.462	ENSSDUG00000013558	rab11bb	78	40.462
ENSSDUG00000008151	zgc:101559	65	33.974	ENSSDUG00000003386	rab9a	77	33.974
ENSSDUG00000008151	zgc:101559	70	30.952	ENSSDUG00000003036	dnajc27	61	30.952

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000008151	zgc:101559	100	88.889	ENSAPOG00000007503	zgc:101559	100	88.889	Acanthochromis_polyacanthus
ENSSDUG00000008151	zgc:101559	87	94.118	ENSACIG00000021459	zgc:101559	89	94.118	Amphilophus_citrinellus
ENSSDUG00000008151	zgc:101559	100	89.316	ENSAOCG00000024675	zgc:101559	100	89.316	Amphiprion_ocellaris
ENSSDUG00000008151	zgc:101559	100	89.316	ENSAPEG00000005176	zgc:101559	100	89.316	Amphiprion_percula
ENSSDUG00000008151	zgc:101559	100	88.034	ENSATEG00000007761	zgc:101559	100	88.034	Anabas_testudineus
ENSSDUG00000008151	zgc:101559	98	90.000	ENSACLG00000027006	zgc:101559	97	90.000	Astatotilapia_calliptera
ENSSDUG00000008151	zgc:101559	100	74.468	ENSAMXG00000040460	zgc:101559	94	74.468	Astyanax_mexicanus
ENSSDUG00000008151	zgc:101559	100	82.906	ENSCSEG00000006243	zgc:101559	100	82.906	Cynoglossus_semilaevis
ENSSDUG00000008151	zgc:101559	100	86.752	ENSCVAG00000019227	zgc:101559	100	86.752	Cyprinodon_variegatus
ENSSDUG00000008151	zgc:101559	100	75.319	ENSDARG00000003257	zgc:101559	100	75.319	Danio_rerio
ENSSDUG00000008151	zgc:101559	100	85.470	ENSFHEG00000011483	zgc:101559	100	85.470	Fundulus_heteroclitus
ENSSDUG00000008151	zgc:101559	91	82.075	ENSGMOG00000011665	zgc:101559	99	82.075	Gadus_morhua
ENSSDUG00000008151	zgc:101559	100	85.043	ENSGAFG00000021202	zgc:101559	100	85.043	Gambusia_affinis
ENSSDUG00000008151	zgc:101559	91	84.434	ENSGACG00000001725	zgc:101559	91	84.434	Gasterosteus_aculeatus
ENSSDUG00000008151	zgc:101559	100	90.598	ENSHBUG00000007827	zgc:101559	100	90.598	Haplochromis_burtoni
ENSSDUG00000008151	zgc:101559	100	77.119	ENSHCOG00000009133	zgc:101559	100	78.571	Hippocampus_comes
ENSSDUG00000008151	zgc:101559	92	75.463	ENSIPUG00000022394	zgc:101559	92	75.463	Ictalurus_punctatus
ENSSDUG00000008151	zgc:101559	100	81.702	ENSKMAG00000002862	zgc:101559	100	81.702	Kryptolebias_marmoratus
ENSSDUG00000008151	zgc:101559	100	89.744	ENSLBEG00000025798	zgc:101559	100	89.744	Labrus_bergylta
ENSSDUG00000008151	zgc:101559	88	65.534	ENSLACG00000011557	zgc:101559	89	65.534	Latimeria_chalumnae
ENSSDUG00000008151	zgc:101559	100	70.513	ENSLOCG00000005904	zgc:101559	99	70.513	Lepisosteus_oculatus
ENSSDUG00000008151	zgc:101559	100	91.453	ENSMAMG00000017431	zgc:101559	100	91.453	Mastacembelus_armatus
ENSSDUG00000008151	zgc:101559	100	90.598	ENSMZEG00005021778	zgc:101559	100	90.598	Maylandia_zebra
ENSSDUG00000008151	zgc:101559	100	85.470	ENSMMOG00000019779	zgc:101559	100	85.470	Mola_mola
ENSSDUG00000008151	zgc:101559	100	87.607	ENSMALG00000003712	zgc:101559	100	87.607	Monopterus_albus
ENSSDUG00000008151	zgc:101559	100	89.744	ENSNBRG00000002684	zgc:101559	100	89.744	Neolamprologus_brichardi
ENSSDUG00000008151	zgc:101559	100	90.598	ENSONIG00000006715	-	100	90.598	Oreochromis_niloticus
ENSSDUG00000008151	zgc:101559	100	84.615	ENSORLG00000030642	zgc:101559	100	84.615	Oryzias_latipes
ENSSDUG00000008151	zgc:101559	100	83.761	ENSORLG00020012685	zgc:101559	100	83.761	Oryzias_latipes_hni
ENSSDUG00000008151	zgc:101559	100	84.188	ENSORLG00015016047	zgc:101559	100	84.188	Oryzias_latipes_hsok
ENSSDUG00000008151	zgc:101559	100	86.752	ENSOMEG00000013128	zgc:101559	100	86.752	Oryzias_melastigma
ENSSDUG00000008151	zgc:101559	96	74.107	ENSPKIG00000013397	zgc:101559	94	74.107	Paramormyrops_kingsleyae
ENSSDUG00000008151	zgc:101559	100	87.179	ENSPFOG00000009101	-	100	87.179	Poecilia_formosa
ENSSDUG00000008151	zgc:101559	100	87.179	ENSPLAG00000020627	zgc:101559	100	87.179	Poecilia_latipinna
ENSSDUG00000008151	zgc:101559	100	87.179	ENSPMEG00000010152	zgc:101559	100	87.179	Poecilia_mexicana
ENSSDUG00000008151	zgc:101559	100	86.752	ENSPREG00000007017	zgc:101559	100	86.752	Poecilia_reticulata
ENSSDUG00000008151	zgc:101559	100	90.598	ENSPNYG00000012922	zgc:101559	100	90.598	Pundamilia_nyererei
ENSSDUG00000008151	zgc:101559	100	75.319	ENSPNAG00000017856	zgc:101559	100	75.319	Pygocentrus_nattereri
ENSSDUG00000008151	zgc:101559	99	70.815	ENSSFOG00015006175	zgc:101559	100	70.815	Scleropages_formosus
ENSSDUG00000008151	zgc:101559	99	87.554	ENSSMAG00000002229	zgc:101559	99	87.554	Scophthalmus_maximus
ENSSDUG00000008151	zgc:101559	100	99.145	ENSSLDG00000019214	zgc:101559	100	99.145	Seriola_lalandi_dorsalis
ENSSDUG00000008151	zgc:101559	100	90.598	ENSSPAG00000006404	zgc:101559	100	90.598	Stegastes_partitus
ENSSDUG00000008151	zgc:101559	100	83.333	ENSTRUG00000009903	zgc:101559	100	83.333	Takifugu_rubripes
ENSSDUG00000008151	zgc:101559	93	83.410	ENSTNIG00000015000	zgc:101559	92	83.410	Tetraodon_nigroviridis
ENSSDUG00000008151	zgc:101559	100	86.752	ENSXCOG00000018683	zgc:101559	100	86.752	Xiphophorus_couchianus
ENSSDUG00000008151	zgc:101559	100	86.752	ENSXMAG00000011171	zgc:101559	100	86.752	Xiphophorus_maculatus