EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000008198 (Gene tree)
Gene ID: 111220817
Gene Symbol: -
Alias: -
Full Name: elongation factor 1-alpha
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 4368 bases
Position: chrBDQW01000078.1:105645-110012
Accession: 111220817
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000011233	GTP_EFTU	PF00009.27	3.5e-54	1	1
ENSSDUP00000011233	GTP_EFTU_D2	PF03144.25	1.2e-14	1	1
ENSSDUP00000011233	GTP_EFTU_D3	PF03143.17	3.3e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000011445	-	2330	XM_022744048	ENSSDUP00000011233	461 (aa)	XP_022599769	UPI000BBEDE4A

Gene Model

Click here to download ENSSDUG00000008198's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000008198's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000008198	-	100	91.126	ENSSDUG00000008223	-	97	91.964
ENSSDUG00000008198	-	95	41.190	ENSSDUG00000012974	hbs1l	61	41.190
ENSSDUG00000008198	-	96	71.493	ENSSDUG00000009163	si:dkey-37o8.1	97	71.493
ENSSDUG00000008198	-	96	37.387	ENSSDUG00000008404	GSPT1	73	37.472
ENSSDUG00000008198	-	95	38.041	ENSSDUG00000016908	gspt1l	76	38.041
ENSSDUG00000008198	-	100	87.013	ENSSDUG00000004897	eef1a1b	98	87.389
ENSSDUG00000008198	-	95	30.310	ENSSDUG00000016896	tufm	87	30.310
ENSSDUG00000008198	-	100	87.229	ENSSDUG00000020050	EEF1A1	98	87.832

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000008198	-	98	93.792	ENSAPOG00000004714	-	98	93.792	Acanthochromis_polyacanthus
ENSSDUG00000008198	-	90	94.431	ENSACIG00000001219	-	97	94.541	Amphilophus_citrinellus
ENSSDUG00000008198	-	100	91.540	ENSAOCG00000022039	-	98	92.018	Amphiprion_ocellaris
ENSSDUG00000008198	-	90	96.368	ENSAOCG00000022002	-	100	96.368	Amphiprion_ocellaris
ENSSDUG00000008198	-	100	91.974	ENSAPEG00000016361	-	98	92.461	Amphiprion_percula
ENSSDUG00000008198	-	100	96.529	ENSATEG00000003244	-	97	96.529	Anabas_testudineus
ENSSDUG00000008198	-	100	94.143	ENSACLG00000022560	-	98	94.235	Astatotilapia_calliptera
ENSSDUG00000008198	-	100	82.684	WBGene00001168	eef-1A.1	98	83.186	Caenorhabditis_elegans
ENSSDUG00000008198	-	100	82.684	WBGene00001169	eef-1A.2	98	83.186	Caenorhabditis_elegans
ENSSDUG00000008198	-	98	79.736	ENSCING00000018894	-	97	79.736	Ciona_intestinalis
ENSSDUG00000008198	-	98	80.000	ENSCING00000005126	-	98	80.000	Ciona_intestinalis
ENSSDUG00000008198	-	100	78.112	ENSCING00000007703	-	97	78.289	Ciona_intestinalis
ENSSDUG00000008198	-	99	83.406	ENSCING00000021478	-	98	83.964	Ciona_intestinalis
ENSSDUG00000008198	-	99	75.817	ENSCSAVG00000001085	-	89	77.252	Ciona_savignyi
ENSSDUG00000008198	-	99	83.370	ENSCSAVG00000006357	-	96	94.667	Ciona_savignyi
ENSSDUG00000008198	-	98	80.392	ENSCSAVG00000003196	-	98	80.392	Ciona_savignyi
ENSSDUG00000008198	-	98	82.418	ENSCSAVG00000009663	-	98	82.418	Ciona_savignyi
ENSSDUG00000008198	-	89	85.194	ENSCSEG00000007992	-	97	85.360	Cynoglossus_semilaevis
ENSSDUG00000008198	-	90	85.507	ENSCSEG00000007972	-	98	85.891	Cynoglossus_semilaevis
ENSSDUG00000008198	-	98	94.457	ENSCSEG00000008011	-	98	94.457	Cynoglossus_semilaevis
ENSSDUG00000008198	-	100	96.746	ENSCVAG00000019356	-	100	96.746	Cyprinodon_variegatus
ENSSDUG00000008198	-	98	84.956	FBgn0000557	eEF1alpha2	98	84.956	Drosophila_melanogaster
ENSSDUG00000008198	-	100	85.281	FBgn0284245	eEF1alpha1	97	85.714	Drosophila_melanogaster
ENSSDUG00000008198	-	99	81.522	ENSEBUG00000015814	-	98	82.040	Eptatretus_burgeri
ENSSDUG00000008198	-	100	96.529	ENSFHEG00000015054	-	100	96.529	Fundulus_heteroclitus
ENSSDUG00000008198	-	98	95.787	ENSGAFG00000014646	-	98	95.787	Gambusia_affinis
ENSSDUG00000008198	-	98	94.457	ENSGACG00000002182	-	98	94.457	Gasterosteus_aculeatus
ENSSDUG00000008198	-	100	91.757	ENSGACG00000002143	-	98	92.018	Gasterosteus_aculeatus
ENSSDUG00000008198	-	55	91.667	ENSHBUG00000017166	-	91	91.736	Haplochromis_burtoni
ENSSDUG00000008198	-	99	84.382	ENSHCOG00000008489	-	96	85.520	Hippocampus_comes
ENSSDUG00000008198	-	98	94.900	ENSHCOG00000008468	-	98	94.900	Hippocampus_comes
ENSSDUG00000008198	-	99	83.913	ENSLBEG00000002955	-	98	84.035	Labrus_bergylta
ENSSDUG00000008198	-	98	94.457	ENSLBEG00000002759	-	98	94.457	Labrus_bergylta
ENSSDUG00000008198	-	100	96.529	ENSMAMG00000007715	-	100	96.529	Mastacembelus_armatus
ENSSDUG00000008198	-	99	75.877	ENSMMOG00000018160	-	95	88.043	Mola_mola
ENSSDUG00000008198	-	98	93.348	ENSMMOG00000001165	-	100	94.318	Mola_mola
ENSSDUG00000008198	-	99	86.957	ENSMMOG00000001106	-	98	87.361	Mola_mola
ENSSDUG00000008198	-	100	83.731	ENSNBRG00000017346	-	97	83.592	Neolamprologus_brichardi
ENSSDUG00000008198	-	76	92.045	ENSONIG00000017760	-	98	92.045	Oreochromis_niloticus
ENSSDUG00000008198	-	100	96.529	ENSORLG00000007614	eef1a	100	96.529	Oryzias_latipes
ENSSDUG00000008198	-	100	96.746	ENSORLG00015002397	-	100	96.746	Oryzias_latipes_hsok
ENSSDUG00000008198	-	100	96.529	ENSOMEG00000018226	-	100	96.529	Oryzias_melastigma
ENSSDUG00000008198	-	98	95.133	ENSPMGG00000023911	-	99	95.333	Periophthalmus_magnuspinnatus
ENSSDUG00000008198	-	95	49.431	ENSPMGG00000022427	-	96	61.250	Periophthalmus_magnuspinnatus
ENSSDUG00000008198	-	98	95.787	ENSPFOG00000003924	-	98	95.533	Poecilia_formosa
ENSSDUG00000008198	-	98	95.787	ENSPLAG00000004316	-	98	95.787	Poecilia_latipinna
ENSSDUG00000008198	-	98	96.009	ENSPMEG00000001010	-	98	96.009	Poecilia_mexicana
ENSSDUG00000008198	-	100	93.939	ENSPREG00000008243	-	98	95.565	Poecilia_reticulata
ENSSDUG00000008198	-	100	94.143	ENSPNYG00000007263	-	98	94.235	Pundamilia_nyererei
ENSSDUG00000008198	-	97	80.674	YPR080W	TEF1	98	80.044	Saccharomyces_cerevisiae
ENSSDUG00000008198	-	97	80.674	YBR118W	TEF2	98	80.044	Saccharomyces_cerevisiae
ENSSDUG00000008198	-	98	83.087	ENSSMAG00000018469	-	98	83.087	Scophthalmus_maximus
ENSSDUG00000008198	-	53	92.213	ENSSMAG00000016277	-	96	92.213	Scophthalmus_maximus
ENSSDUG00000008198	-	98	94.013	ENSSPAG00000001710	-	98	94.013	Stegastes_partitus
ENSSDUG00000008198	-	99	86.739	ENSTRUG00000005066	-	98	87.140	Takifugu_rubripes
ENSSDUG00000008198	-	98	93.570	ENSTRUG00000005727	ef-1a	98	93.570	Takifugu_rubripes
ENSSDUG00000008198	-	98	94.678	ENSTNIG00000002619	-	98	94.678	Tetraodon_nigroviridis
ENSSDUG00000008198	-	99	82.174	ENSTNIG00000002617	-	94	83.778	Tetraodon_nigroviridis
ENSSDUG00000008198	-	98	95.787	ENSXCOG00000001542	-	100	97.674	Xiphophorus_couchianus