EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000008217 (Gene tree)
Gene ID: 111231714
Gene Symbol: rnaseh1
Alias: zgc:91971
Full Name: ribonuclease H1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 5192 bases
Position: chrBDQW01000312.1:54048-59239
Accession: 111231714
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000011252	RNase_H	PF00075.24	1.1e-42	1	1
ENSSDUP00000011243	RNase_H	PF00075.24	1.3e-42	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000011455	-	968	-	ENSSDUP00000011243	306 (aa)	-	-
ENSSDUT00000011464	-	1515	XM_022758931	ENSSDUP00000011252	283 (aa)	XP_022614652	-

Gene Model

Click here to download ENSSDUG00000008217's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03030	DNA replication	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000008217's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000008217	rnaseh1	93	54.511	ENSG00000171865	RNASEH1	89	53.480	Homo_sapiens
ENSSDUG00000008217	rnaseh1	98	82.310	ENSAPOG00000000412	rnaseh1	98	81.973	Acanthochromis_polyacanthus
ENSSDUG00000008217	rnaseh1	93	54.135	ENSAMEG00000018433	RNASEH1	89	53.383	Ailuropoda_melanoleuca
ENSSDUG00000008217	rnaseh1	100	81.979	ENSACIG00000014666	rnaseh1	98	81.000	Amphilophus_citrinellus
ENSSDUG00000008217	rnaseh1	98	84.477	ENSAOCG00000015210	rnaseh1	98	84.014	Amphiprion_ocellaris
ENSSDUG00000008217	rnaseh1	98	85.199	ENSAPEG00000014104	rnaseh1	96	84.775	Amphiprion_percula
ENSSDUG00000008217	rnaseh1	99	84.342	ENSATEG00000000598	rnaseh1	99	84.342	Anabas_testudineus
ENSSDUG00000008217	rnaseh1	89	53.725	ENSAPLG00000001961	RNASEH1	99	52.549	Anas_platyrhynchos
ENSSDUG00000008217	rnaseh1	93	48.805	ENSACAG00000016857	rnaseh1	91	47.099	Anolis_carolinensis
ENSSDUG00000008217	rnaseh1	93	55.303	ENSANAG00000024055	RNASEH1	89	54.647	Aotus_nancymaae
ENSSDUG00000008217	rnaseh1	99	81.185	ENSACLG00000006741	rnaseh1	98	80.592	Astatotilapia_calliptera
ENSSDUG00000008217	rnaseh1	95	57.554	ENSAMXG00000042940	rnaseh1	98	58.333	Astyanax_mexicanus
ENSSDUG00000008217	rnaseh1	94	55.431	ENSBTAG00000016235	RNASEH1	91	54.682	Bos_taurus
ENSSDUG00000008217	rnaseh1	97	36.131	WBGene00004382	rnh-1.0	99	36.131	Caenorhabditis_elegans
ENSSDUG00000008217	rnaseh1	93	52.963	ENSCJAG00000035450	RNASEH1	89	52.364	Callithrix_jacchus
ENSSDUG00000008217	rnaseh1	93	55.431	ENSCAFG00000003259	RNASEH1	98	52.203	Canis_familiaris
ENSSDUG00000008217	rnaseh1	53	68.456	ENSCAFG00020004994	RNASEH1	96	68.456	Canis_lupus_dingo
ENSSDUG00000008217	rnaseh1	86	40.684	ENSCHIG00000022230	-	99	42.683	Capra_hircus
ENSSDUG00000008217	rnaseh1	94	55.597	ENSCHIG00000022264	-	90	53.933	Capra_hircus
ENSSDUG00000008217	rnaseh1	93	53.962	ENSTSYG00000012926	RNASEH1	89	53.585	Carlito_syrichta
ENSSDUG00000008217	rnaseh1	88	54.582	ENSCAPG00000004813	RNASEH1	99	54.183	Cavia_aperea
ENSSDUG00000008217	rnaseh1	94	53.731	ENSCPOG00000022278	Rnaseh1	87	53.358	Cavia_porcellus
ENSSDUG00000008217	rnaseh1	93	54.074	ENSCCAG00000038017	RNASEH1	89	53.160	Cebus_capucinus
ENSSDUG00000008217	rnaseh1	93	49.811	ENSCATG00000016818	-	89	49.438	Cercocebus_atys
ENSSDUG00000008217	rnaseh1	93	53.759	ENSCATG00000016515	-	89	52.593	Cercocebus_atys
ENSSDUG00000008217	rnaseh1	93	53.585	ENSCLAG00000002440	RNASEH1	89	53.585	Chinchilla_lanigera
ENSSDUG00000008217	rnaseh1	93	54.167	ENSCSAG00000006943	RNASEH1	89	53.506	Chlorocebus_sabaeus
ENSSDUG00000008217	rnaseh1	61	64.205	ENSCHOG00000008547	RNASEH1	74	68.874	Choloepus_hoffmanni
ENSSDUG00000008217	rnaseh1	93	54.074	ENSCPBG00000021620	RNASEH1	98	54.074	Chrysemys_picta_bellii
ENSSDUG00000008217	rnaseh1	94	37.276	ENSCING00000014054	-	93	37.276	Ciona_intestinalis
ENSSDUG00000008217	rnaseh1	79	37.118	ENSCSAVG00000000009	-	96	36.444	Ciona_savignyi
ENSSDUG00000008217	rnaseh1	93	54.511	ENSCANG00000037763	RNASEH1	89	53.875	Colobus_angolensis_palliatus
ENSSDUG00000008217	rnaseh1	93	53.962	ENSCGRG00001008950	Rnaseh1	96	52.381	Cricetulus_griseus_chok1gshd
ENSSDUG00000008217	rnaseh1	93	53.962	ENSCGRG00000006029	Rnaseh1	96	52.381	Cricetulus_griseus_crigri
ENSSDUG00000008217	rnaseh1	99	69.204	ENSCSEG00000005741	rnaseh1	95	72.202	Cynoglossus_semilaevis
ENSSDUG00000008217	rnaseh1	98	76.173	ENSCVAG00000018717	rnaseh1	97	73.973	Cyprinodon_variegatus
ENSSDUG00000008217	rnaseh1	95	68.364	ENSDARG00000042571	rnaseh1	98	68.000	Danio_rerio
ENSSDUG00000008217	rnaseh1	96	56.777	ENSDNOG00000016056	RNASEH1	91	56.410	Dasypus_novemcinctus
ENSSDUG00000008217	rnaseh1	93	54.340	ENSDORG00000000704	Rnaseh1	89	53.962	Dipodomys_ordii
ENSSDUG00000008217	rnaseh1	95	37.288	FBgn0023171	rnh1	94	36.949	Drosophila_melanogaster
ENSSDUG00000008217	rnaseh1	93	53.585	ENSETEG00000012674	RNASEH1	93	51.418	Echinops_telfairi
ENSSDUG00000008217	rnaseh1	95	44.280	ENSEBUG00000006116	rnaseh1	79	43.590	Eptatretus_burgeri
ENSSDUG00000008217	rnaseh1	94	44.558	ENSEBUG00000008898	rnaseh1	99	44.558	Eptatretus_burgeri
ENSSDUG00000008217	rnaseh1	93	57.197	ENSEASG00005022200	RNASEH1	87	56.439	Equus_asinus_asinus
ENSSDUG00000008217	rnaseh1	93	57.197	ENSECAG00000020695	RNASEH1	87	56.439	Equus_caballus
ENSSDUG00000008217	rnaseh1	95	74.368	ENSELUG00000010112	rnaseh1	95	72.569	Esox_lucius
ENSSDUG00000008217	rnaseh1	93	56.439	ENSFCAG00000025832	RNASEH1	92	54.909	Felis_catus
ENSSDUG00000008217	rnaseh1	95	58.363	ENSFALG00000002069	RNASEH1	93	58.363	Ficedula_albicollis
ENSSDUG00000008217	rnaseh1	93	53.208	ENSFDAG00000002035	RNASEH1	79	53.962	Fukomys_damarensis
ENSSDUG00000008217	rnaseh1	95	72.963	ENSGMOG00000013818	rnaseh1	95	72.183	Gadus_morhua
ENSSDUG00000008217	rnaseh1	94	58.182	ENSGALG00000016389	RNASEH1	92	56.777	Gallus_gallus
ENSSDUG00000008217	rnaseh1	94	74.157	ENSGAFG00000001776	rnaseh1	96	72.085	Gambusia_affinis
ENSSDUG00000008217	rnaseh1	95	84.758	ENSGACG00000011935	rnaseh1	96	83.275	Gasterosteus_aculeatus
ENSSDUG00000008217	rnaseh1	93	57.565	ENSGAGG00000009150	RNASEH1	67	54.882	Gopherus_agassizii
ENSSDUG00000008217	rnaseh1	93	54.511	ENSGGOG00000034822	RNASEH1	89	53.480	Gorilla_gorilla
ENSSDUG00000008217	rnaseh1	99	80.139	ENSHBUG00000004666	rnaseh1	98	79.605	Haplochromis_burtoni
ENSSDUG00000008217	rnaseh1	93	52.075	ENSHGLG00000002585	Rnaseh1	82	51.698	Heterocephalus_glaber_female
ENSSDUG00000008217	rnaseh1	93	52.075	ENSHGLG00100005105	Rnaseh1	82	51.698	Heterocephalus_glaber_male
ENSSDUG00000008217	rnaseh1	95	74.638	ENSHCOG00000012329	rnaseh1	94	74.306	Hippocampus_comes
ENSSDUG00000008217	rnaseh1	95	62.963	ENSIPUG00000023060	rnaseh1	98	62.963	Ictalurus_punctatus
ENSSDUG00000008217	rnaseh1	96	53.650	ENSSTOG00000012774	RNASEH1	93	53.650	Ictidomys_tridecemlineatus
ENSSDUG00000008217	rnaseh1	88	49.077	ENSJJAG00000020238	Rnaseh1	99	48.339	Jaculus_jaculus
ENSSDUG00000008217	rnaseh1	93	50.752	ENSJJAG00000021481	-	97	47.635	Jaculus_jaculus
ENSSDUG00000008217	rnaseh1	95	43.243	ENSJJAG00000008994	-	97	42.230	Jaculus_jaculus
ENSSDUG00000008217	rnaseh1	98	77.174	ENSKMAG00000001373	rnaseh1	99	72.910	Kryptolebias_marmoratus
ENSSDUG00000008217	rnaseh1	98	79.783	ENSLBEG00000004480	rnaseh1	97	81.852	Labrus_bergylta
ENSSDUG00000008217	rnaseh1	95	53.237	ENSLACG00000007100	RNASEH1	90	54.839	Latimeria_chalumnae
ENSSDUG00000008217	rnaseh1	96	61.348	ENSLOCG00000017212	rnaseh1	100	61.922	Lepisosteus_oculatus
ENSSDUG00000008217	rnaseh1	93	55.849	ENSLAFG00000015091	RNASEH1	89	55.094	Loxodonta_africana
ENSSDUG00000008217	rnaseh1	93	55.303	ENSMFAG00000000063	-	89	53.114	Macaca_fascicularis
ENSSDUG00000008217	rnaseh1	93	50.189	ENSMFAG00000002323	-	89	50.189	Macaca_fascicularis
ENSSDUG00000008217	rnaseh1	93	49.811	ENSMMUG00000019280	-	89	49.811	Macaca_mulatta
ENSSDUG00000008217	rnaseh1	93	55.682	ENSMNEG00000040183	-	89	53.480	Macaca_nemestrina
ENSSDUG00000008217	rnaseh1	93	50.189	ENSMNEG00000029676	-	89	50.189	Macaca_nemestrina
ENSSDUG00000008217	rnaseh1	93	52.453	ENSMLEG00000028662	-	89	52.453	Mandrillus_leucophaeus
ENSSDUG00000008217	rnaseh1	87	54.618	ENSMLEG00000039352	-	98	53.815	Mandrillus_leucophaeus
ENSSDUG00000008217	rnaseh1	100	82.042	ENSMAMG00000019725	rnaseh1	100	82.042	Mastacembelus_armatus
ENSSDUG00000008217	rnaseh1	99	81.185	ENSMZEG00005013006	rnaseh1	98	80.592	Maylandia_zebra
ENSSDUG00000008217	rnaseh1	83	58.367	ENSMGAG00000013979	RNASEH1	98	57.851	Meleagris_gallopavo
ENSSDUG00000008217	rnaseh1	93	55.094	ENSMAUG00000014957	Rnaseh1	96	51.027	Mesocricetus_auratus
ENSSDUG00000008217	rnaseh1	93	56.226	ENSMICG00000033156	RNASEH1	88	55.472	Microcebus_murinus
ENSSDUG00000008217	rnaseh1	93	55.185	ENSMOCG00000015522	Rnaseh1	96	52.027	Microtus_ochrogaster
ENSSDUG00000008217	rnaseh1	95	79.851	ENSMMOG00000015902	rnaseh1	94	79.649	Mola_mola
ENSSDUG00000008217	rnaseh1	93	55.094	ENSMODG00000014491	-	94	51.877	Monodelphis_domestica
ENSSDUG00000008217	rnaseh1	82	48.945	ENSMODG00000028814	-	91	50.211	Monodelphis_domestica
ENSSDUG00000008217	rnaseh1	98	84.477	ENSMALG00000010565	rnaseh1	98	82.993	Monopterus_albus
ENSSDUG00000008217	rnaseh1	93	56.180	MGP_CAROLIEiJ_G0017660	Rnaseh1	96	52.041	Mus_caroli
ENSSDUG00000008217	rnaseh1	93	56.554	ENSMUSG00000020630	Rnaseh1	96	52.381	Mus_musculus
ENSSDUG00000008217	rnaseh1	93	53.232	MGP_PahariEiJ_G0029418	Rnaseh1	96	51.877	Mus_pahari
ENSSDUG00000008217	rnaseh1	93	56.180	MGP_SPRETEiJ_G0018502	Rnaseh1	96	52.041	Mus_spretus
ENSSDUG00000008217	rnaseh1	53	68.456	ENSMPUG00000012984	RNASEH1	72	68.456	Mustela_putorius_furo
ENSSDUG00000008217	rnaseh1	93	56.343	ENSNGAG00000015966	Rnaseh1	84	55.597	Nannospalax_galili
ENSSDUG00000008217	rnaseh1	99	80.488	ENSNBRG00000008739	rnaseh1	98	79.934	Neolamprologus_brichardi
ENSSDUG00000008217	rnaseh1	93	46.792	ENSNLEG00000015400	RNASEH1	87	46.792	Nomascus_leucogenys
ENSSDUG00000008217	rnaseh1	86	49.187	ENSNLEG00000000059	-	88	49.187	Nomascus_leucogenys
ENSSDUG00000008217	rnaseh1	69	45.128	ENSMEUG00000003610	-	65	45.128	Notamacropus_eugenii
ENSSDUG00000008217	rnaseh1	94	53.759	ENSOPRG00000005072	RNASEH1	90	53.759	Ochotona_princeps
ENSSDUG00000008217	rnaseh1	93	54.717	ENSODEG00000000235	Rnaseh1	92	52.297	Octodon_degus
ENSSDUG00000008217	rnaseh1	96	83.094	ENSONIG00000018697	rnaseh1	100	82.374	Oreochromis_niloticus
ENSSDUG00000008217	rnaseh1	93	55.849	ENSOCUG00000006117	RNASEH1	93	53.901	Oryctolagus_cuniculus
ENSSDUG00000008217	rnaseh1	98	77.061	ENSORLG00000018127	rnaseh1	99	77.061	Oryzias_latipes
ENSSDUG00000008217	rnaseh1	98	76.703	ENSORLG00020013660	rnaseh1	97	75.085	Oryzias_latipes_hni
ENSSDUG00000008217	rnaseh1	98	76.703	ENSORLG00015011338	rnaseh1	97	75.085	Oryzias_latipes_hsok
ENSSDUG00000008217	rnaseh1	87	73.577	ENSOMEG00000004710	rnaseh1	97	72.201	Oryzias_melastigma
ENSSDUG00000008217	rnaseh1	93	53.933	ENSOGAG00000017176	RNASEH1	89	53.933	Otolemur_garnettii
ENSSDUG00000008217	rnaseh1	94	48.551	ENSOARG00000005386	RNASEH1	90	46.545	Ovis_aries
ENSSDUG00000008217	rnaseh1	93	54.511	ENSPPAG00000034221	RNASEH1	89	53.480	Pan_paniscus
ENSSDUG00000008217	rnaseh1	93	56.061	ENSPPRG00000015513	RNASEH1	92	54.545	Panthera_pardus
ENSSDUG00000008217	rnaseh1	87	56.504	ENSPTIG00000019034	RNASEH1	83	55.285	Panthera_tigris_altaica
ENSSDUG00000008217	rnaseh1	93	54.511	ENSPTRG00000011614	RNASEH1	89	53.480	Pan_troglodytes
ENSSDUG00000008217	rnaseh1	86	48.016	ENSPTRG00000043403	-	91	47.619	Pan_troglodytes
ENSSDUG00000008217	rnaseh1	93	53.759	ENSPANG00000000443	RNASEH1	97	53.725	Papio_anubis
ENSSDUG00000008217	rnaseh1	93	49.430	ENSPANG00000018246	-	88	48.669	Papio_anubis
ENSSDUG00000008217	rnaseh1	96	60.791	ENSPKIG00000003146	rnaseh1	100	61.151	Paramormyrops_kingsleyae
ENSSDUG00000008217	rnaseh1	93	55.762	ENSPSIG00000002937	RNASEH1	99	54.815	Pelodiscus_sinensis
ENSSDUG00000008217	rnaseh1	99	65.035	ENSPMGG00000017463	rnaseh1	98	64.311	Periophthalmus_magnuspinnatus
ENSSDUG00000008217	rnaseh1	93	54.340	ENSPEMG00000022465	-	96	51.536	Peromyscus_maniculatus_bairdii
ENSSDUG00000008217	rnaseh1	93	54.717	ENSPCIG00000023334	-	88	54.717	Phascolarctos_cinereus
ENSSDUG00000008217	rnaseh1	57	37.654	ENSPCIG00000026047	-	86	37.255	Phascolarctos_cinereus
ENSSDUG00000008217	rnaseh1	94	74.532	ENSPFOG00000002841	rnaseh1	96	72.085	Poecilia_formosa
ENSSDUG00000008217	rnaseh1	61	63.218	ENSPLAG00000021349	-	73	60.847	Poecilia_latipinna
ENSSDUG00000008217	rnaseh1	94	74.157	ENSPMEG00000016826	rnaseh1	96	71.731	Poecilia_mexicana
ENSSDUG00000008217	rnaseh1	94	72.527	ENSPREG00000012197	rnaseh1	96	70.242	Poecilia_reticulata
ENSSDUG00000008217	rnaseh1	93	45.865	ENSPPYG00000025873	RNASEH1	88	45.756	Pongo_abelii
ENSSDUG00000008217	rnaseh1	86	49.393	ENSPPYG00000008067	-	90	48.583	Pongo_abelii
ENSSDUG00000008217	rnaseh1	94	55.224	ENSPCAG00000002500	RNASEH1	90	54.851	Procavia_capensis
ENSSDUG00000008217	rnaseh1	93	50.187	ENSPCOG00000019444	RNASEH1	88	49.438	Propithecus_coquereli
ENSSDUG00000008217	rnaseh1	94	50.000	ENSPVAG00000002070	RNASEH1	99	48.026	Pteropus_vampyrus
ENSSDUG00000008217	rnaseh1	99	80.139	ENSPNYG00000001292	rnaseh1	98	79.605	Pundamilia_nyererei
ENSSDUG00000008217	rnaseh1	95	65.343	ENSPNAG00000022344	rnaseh1	96	63.574	Pygocentrus_nattereri
ENSSDUG00000008217	rnaseh1	93	55.263	ENSRNOG00000008584	Rnaseh1	92	54.064	Rattus_norvegicus
ENSSDUG00000008217	rnaseh1	93	54.167	ENSRBIG00000034222	RNASEH1	88	53.875	Rhinopithecus_bieti
ENSSDUG00000008217	rnaseh1	93	54.135	ENSRROG00000041761	RNASEH1	88	53.875	Rhinopithecus_roxellana
ENSSDUG00000008217	rnaseh1	95	44.000	YMR234W	-	87	44.000	Saccharomyces_cerevisiae
ENSSDUG00000008217	rnaseh1	93	54.815	ENSSBOG00000025411	RNASEH1	89	53.160	Saimiri_boliviensis_boliviensis
ENSSDUG00000008217	rnaseh1	94	54.478	ENSSHAG00000013051	RNASEH1	94	52.797	Sarcophilus_harrisii
ENSSDUG00000008217	rnaseh1	96	60.364	ENSSFOG00015002709	rnaseh1	96	60.702	Scleropages_formosus
ENSSDUG00000008217	rnaseh1	99	83.929	ENSSMAG00000007586	rnaseh1	97	82.993	Scophthalmus_maximus
ENSSDUG00000008217	rnaseh1	94	91.760	ENSSLDG00000000442	rnaseh1	97	95.703	Seriola_lalandi_dorsalis
ENSSDUG00000008217	rnaseh1	95	50.538	ENSSPUG00000006644	RNASEH1	93	50.538	Sphenodon_punctatus
ENSSDUG00000008217	rnaseh1	98	85.252	ENSSPAG00000009353	rnaseh1	97	84.746	Stegastes_partitus
ENSSDUG00000008217	rnaseh1	94	54.851	ENSSSCG00000025305	RNASEH1	90	54.851	Sus_scrofa
ENSSDUG00000008217	rnaseh1	94	55.914	ENSTGUG00000012980	RNASEH1	92	55.914	Taeniopygia_guttata
ENSSDUG00000008217	rnaseh1	98	75.986	ENSTRUG00000015774	rnaseh1	100	75.986	Takifugu_rubripes
ENSSDUG00000008217	rnaseh1	98	78.417	ENSTNIG00000010715	rnaseh1	99	78.417	Tetraodon_nigroviridis
ENSSDUG00000008217	rnaseh1	94	52.985	ENSTTRG00000001615	RNASEH1	90	51.866	Tursiops_truncatus
ENSSDUG00000008217	rnaseh1	53	67.785	ENSUAMG00000018254	RNASEH1	77	67.785	Ursus_americanus
ENSSDUG00000008217	rnaseh1	72	54.854	ENSUMAG00000003941	RNASEH1	65	53.333	Ursus_maritimus
ENSSDUG00000008217	rnaseh1	94	46.520	ENSVPAG00000011589	RNASEH1	90	46.154	Vicugna_pacos
ENSSDUG00000008217	rnaseh1	93	55.431	ENSVVUG00000008633	RNASEH1	88	51.864	Vulpes_vulpes
ENSSDUG00000008217	rnaseh1	93	54.104	ENSXETG00000001212	rnaseh1	95	52.669	Xenopus_tropicalis
ENSSDUG00000008217	rnaseh1	92	38.314	ENSXETG00000030371	-	98	37.931	Xenopus_tropicalis
ENSSDUG00000008217	rnaseh1	94	74.157	ENSXMAG00000002357	rnaseh1	96	72.085	Xiphophorus_maculatus