EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000008488 (Gene tree)
Gene ID: 111216887
Gene Symbol: r3hdm4
Alias: zgc:158644
Full Name: R3H domain containing 4
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 8611 bases
Position: chrBDQW01000002.1:6451405-6460015
Accession: 111216887
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000011625	R3H	PF01424.22	6.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000011842	-	3515	XM_022738930	ENSSDUP00000011625	256 (aa)	XP_022594651	UPI000BBEF5B6

Gene Model

Click here to download ENSSDUG00000008488's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000008488's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000008488	r3hdm4	91	57.741	ENSG00000198858	R3HDM4	90	58.667	Homo_sapiens
ENSSDUG00000008488	r3hdm4	91	58.159	ENSAMEG00000003001	R3HDM4	97	58.159	Ailuropoda_melanoleuca
ENSSDUG00000008488	r3hdm4	100	92.188	ENSACIG00000004672	r3hdm4	100	92.188	Amphilophus_citrinellus
ENSSDUG00000008488	r3hdm4	98	90.873	ENSATEG00000015913	r3hdm4	99	90.873	Anabas_testudineus
ENSSDUG00000008488	r3hdm4	91	58.577	ENSANAG00000029748	R3HDM4	98	58.577	Aotus_nancymaae
ENSSDUG00000008488	r3hdm4	91	57.322	ENSBTAG00000046406	R3HDM4	88	57.322	Bos_taurus
ENSSDUG00000008488	r3hdm4	93	57.028	ENSCJAG00000020114	R3HDM4	92	57.028	Callithrix_jacchus
ENSSDUG00000008488	r3hdm4	91	58.577	ENSCAFG00000019665	R3HDM4	87	58.577	Canis_familiaris
ENSSDUG00000008488	r3hdm4	91	58.996	ENSCAFG00020016880	R3HDM4	87	58.996	Canis_lupus_dingo
ENSSDUG00000008488	r3hdm4	91	57.741	ENSCHIG00000020110	R3HDM4	91	57.741	Capra_hircus
ENSSDUG00000008488	r3hdm4	91	58.159	ENSCCAG00000019955	R3HDM4	86	58.159	Cebus_capucinus
ENSSDUG00000008488	r3hdm4	91	57.500	ENSCATG00000037269	R3HDM4	89	57.676	Cercocebus_atys
ENSSDUG00000008488	r3hdm4	91	56.723	ENSCLAG00000007094	R3HDM4	97	56.723	Chinchilla_lanigera
ENSSDUG00000008488	r3hdm4	91	57.322	ENSCSAG00000012574	R3HDM4	88	57.322	Chlorocebus_sabaeus
ENSSDUG00000008488	r3hdm4	100	63.158	ENSCPBG00000009805	R3HDM4	100	63.158	Chrysemys_picta_bellii
ENSSDUG00000008488	r3hdm4	91	57.741	ENSCANG00000040439	R3HDM4	83	57.741	Colobus_angolensis_palliatus
ENSSDUG00000008488	r3hdm4	91	57.384	ENSCGRG00001021650	R3hdm4	89	57.384	Cricetulus_griseus_chok1gshd
ENSSDUG00000008488	r3hdm4	91	57.384	ENSCGRG00000013169	R3hdm4	89	57.384	Cricetulus_griseus_crigri
ENSSDUG00000008488	r3hdm4	100	83.984	ENSCSEG00000018211	r3hdm4	100	83.984	Cynoglossus_semilaevis
ENSSDUG00000008488	r3hdm4	100	87.500	ENSCVAG00000017127	r3hdm4	100	87.500	Cyprinodon_variegatus
ENSSDUG00000008488	r3hdm4	90	56.250	ENSDORG00000006605	R3hdm4	96	56.250	Dipodomys_ordii
ENSSDUG00000008488	r3hdm4	91	57.322	ENSEASG00005021556	R3HDM4	86	57.322	Equus_asinus_asinus
ENSSDUG00000008488	r3hdm4	91	57.322	ENSECAG00000000003	R3HDM4	87	57.322	Equus_caballus
ENSSDUG00000008488	r3hdm4	91	57.322	ENSFCAG00000042437	R3HDM4	88	57.322	Felis_catus
ENSSDUG00000008488	r3hdm4	91	64.831	ENSFALG00000013938	R3HDM4	97	64.831	Ficedula_albicollis
ENSSDUG00000008488	r3hdm4	91	56.485	ENSFDAG00000017040	R3HDM4	97	56.485	Fukomys_damarensis
ENSSDUG00000008488	r3hdm4	100	87.109	ENSFHEG00000017636	r3hdm4	100	87.109	Fundulus_heteroclitus
ENSSDUG00000008488	r3hdm4	95	71.488	ENSGMOG00000001231	r3hdm4	100	71.488	Gadus_morhua
ENSSDUG00000008488	r3hdm4	91	63.025	ENSGALG00000001998	R3HDM4	90	63.025	Gallus_gallus
ENSSDUG00000008488	r3hdm4	100	85.547	ENSGAFG00000004173	r3hdm4	100	85.547	Gambusia_affinis
ENSSDUG00000008488	r3hdm4	100	62.782	ENSGAGG00000019698	R3HDM4	100	62.782	Gopherus_agassizii
ENSSDUG00000008488	r3hdm4	91	57.741	ENSGGOG00000008040	R3HDM4	97	57.741	Gorilla_gorilla
ENSSDUG00000008488	r3hdm4	100	92.969	ENSHBUG00000014810	r3hdm4	100	92.969	Haplochromis_burtoni
ENSSDUG00000008488	r3hdm4	91	56.303	ENSHGLG00000016194	R3HDM4	88	56.485	Heterocephalus_glaber_female
ENSSDUG00000008488	r3hdm4	99	85.882	ENSHCOG00000008422	r3hdm4	99	85.882	Hippocampus_comes
ENSSDUG00000008488	r3hdm4	100	70.543	ENSIPUG00000006716	r3hdm4	100	70.543	Ictalurus_punctatus
ENSSDUG00000008488	r3hdm4	91	55.462	ENSSTOG00000023015	R3HDM4	97	56.067	Ictidomys_tridecemlineatus
ENSSDUG00000008488	r3hdm4	90	56.962	ENSJJAG00000012475	R3hdm4	89	56.962	Jaculus_jaculus
ENSSDUG00000008488	r3hdm4	100	86.328	ENSKMAG00000005853	r3hdm4	100	86.328	Kryptolebias_marmoratus
ENSSDUG00000008488	r3hdm4	100	91.016	ENSLBEG00000000730	r3hdm4	100	91.016	Labrus_bergylta
ENSSDUG00000008488	r3hdm4	100	62.214	ENSLACG00000016445	R3HDM4	100	62.214	Latimeria_chalumnae
ENSSDUG00000008488	r3hdm4	100	69.847	ENSLOCG00000002423	r3hdm4	100	71.756	Lepisosteus_oculatus
ENSSDUG00000008488	r3hdm4	91	57.806	ENSLAFG00000017796	R3HDM4	91	57.806	Loxodonta_africana
ENSSDUG00000008488	r3hdm4	91	57.741	ENSMFAG00000044131	R3HDM4	88	57.741	Macaca_fascicularis
ENSSDUG00000008488	r3hdm4	86	58.667	ENSMMUG00000009682	R3HDM4	90	58.667	Macaca_mulatta
ENSSDUG00000008488	r3hdm4	91	57.741	ENSMNEG00000044115	R3HDM4	96	57.741	Macaca_nemestrina
ENSSDUG00000008488	r3hdm4	92	57.202	ENSMLEG00000035693	R3HDM4	89	57.377	Mandrillus_leucophaeus
ENSSDUG00000008488	r3hdm4	87	93.274	ENSMAMG00000005652	r3hdm4	91	93.274	Mastacembelus_armatus
ENSSDUG00000008488	r3hdm4	91	56.540	ENSMAUG00000010611	R3hdm4	91	56.540	Mesocricetus_auratus
ENSSDUG00000008488	r3hdm4	91	57.741	ENSMICG00000010124	R3HDM4	88	57.741	Microcebus_murinus
ENSSDUG00000008488	r3hdm4	91	56.170	ENSMOCG00000002646	R3hdm4	89	56.596	Microtus_ochrogaster
ENSSDUG00000008488	r3hdm4	100	88.281	ENSMMOG00000008253	r3hdm4	100	88.281	Mola_mola
ENSSDUG00000008488	r3hdm4	89	60.435	ENSMODG00000005698	R3HDM4	99	60.435	Monodelphis_domestica
ENSSDUG00000008488	r3hdm4	100	88.672	ENSMALG00000018856	r3hdm4	100	88.672	Monopterus_albus
ENSSDUG00000008488	r3hdm4	91	55.745	MGP_CAROLIEiJ_G0015551	R3hdm4	89	56.170	Mus_caroli
ENSSDUG00000008488	r3hdm4	90	56.466	ENSMUSG00000035781	R3hdm4	89	56.466	Mus_musculus
ENSSDUG00000008488	r3hdm4	91	55.319	MGP_PahariEiJ_G0030964	R3hdm4	89	55.745	Mus_pahari
ENSSDUG00000008488	r3hdm4	91	56.596	MGP_SPRETEiJ_G0016369	-	75	56.596	Mus_spretus
ENSSDUG00000008488	r3hdm4	93	58.848	ENSMPUG00000009394	R3HDM4	90	58.848	Mustela_putorius_furo
ENSSDUG00000008488	r3hdm4	100	92.188	ENSNBRG00000004438	r3hdm4	100	92.188	Neolamprologus_brichardi
ENSSDUG00000008488	r3hdm4	86	54.545	ENSNLEG00000001022	R3HDM4	99	54.545	Nomascus_leucogenys
ENSSDUG00000008488	r3hdm4	91	59.322	ENSMEUG00000011020	R3HDM4	99	59.322	Notamacropus_eugenii
ENSSDUG00000008488	r3hdm4	91	56.723	ENSODEG00000011745	R3HDM4	88	56.723	Octodon_degus
ENSSDUG00000008488	r3hdm4	100	92.578	ENSONIG00000012675	r3hdm4	92	92.578	Oreochromis_niloticus
ENSSDUG00000008488	r3hdm4	100	85.938	ENSOMEG00000003005	r3hdm4	100	85.938	Oryzias_melastigma
ENSSDUG00000008488	r3hdm4	91	57.806	ENSOGAG00000025656	R3HDM4	89	57.806	Otolemur_garnettii
ENSSDUG00000008488	r3hdm4	91	56.904	ENSOARG00000009945	R3HDM4	97	56.904	Ovis_aries
ENSSDUG00000008488	r3hdm4	91	57.741	ENSPPAG00000042371	R3HDM4	97	57.741	Pan_paniscus
ENSSDUG00000008488	r3hdm4	91	57.741	ENSPANG00000015203	R3HDM4	88	57.741	Papio_anubis
ENSSDUG00000008488	r3hdm4	100	69.084	ENSPKIG00000007421	r3hdm4	100	70.611	Paramormyrops_kingsleyae
ENSSDUG00000008488	r3hdm4	100	78.210	ENSPMGG00000020467	r3hdm4	100	78.210	Periophthalmus_magnuspinnatus
ENSSDUG00000008488	r3hdm4	91	57.447	ENSPEMG00000008365	Tmem259	97	57.447	Peromyscus_maniculatus_bairdii
ENSSDUG00000008488	r3hdm4	100	84.766	ENSPFOG00000003199	r3hdm4	100	84.766	Poecilia_formosa
ENSSDUG00000008488	r3hdm4	100	85.156	ENSPMEG00000014183	r3hdm4	100	85.156	Poecilia_mexicana
ENSSDUG00000008488	r3hdm4	100	85.547	ENSPREG00000010709	r3hdm4	100	85.547	Poecilia_reticulata
ENSSDUG00000008488	r3hdm4	91	57.806	ENSPPYG00000009297	R3HDM4	88	57.806	Pongo_abelii
ENSSDUG00000008488	r3hdm4	58	59.603	ENSPCAG00000010997	R3HDM4	55	59.603	Procavia_capensis
ENSSDUG00000008488	r3hdm4	91	58.577	ENSPCOG00000016785	R3HDM4	88	58.577	Propithecus_coquereli
ENSSDUG00000008488	r3hdm4	100	92.969	ENSPNYG00000017489	r3hdm4	100	92.969	Pundamilia_nyererei
ENSSDUG00000008488	r3hdm4	91	55.745	ENSRNOG00000011489	R3hdm4	89	56.170	Rattus_norvegicus
ENSSDUG00000008488	r3hdm4	91	57.741	ENSRROG00000028842	R3HDM4	88	57.741	Rhinopithecus_roxellana
ENSSDUG00000008488	r3hdm4	91	56.612	ENSSBOG00000019298	R3HDM4	70	57.025	Saimiri_boliviensis_boliviensis
ENSSDUG00000008488	r3hdm4	56	62.329	ENSSHAG00000003036	-	100	62.329	Sarcophilus_harrisii
ENSSDUG00000008488	r3hdm4	97	75.806	ENSSFOG00015020574	r3hdm4	91	75.904	Scleropages_formosus
ENSSDUG00000008488	r3hdm4	100	91.797	ENSSMAG00000021090	r3hdm4	74	91.797	Scophthalmus_maximus
ENSSDUG00000008488	r3hdm4	100	99.609	ENSSLDG00000025328	r3hdm4	100	99.609	Seriola_lalandi_dorsalis
ENSSDUG00000008488	r3hdm4	91	62.869	ENSSPUG00000005434	R3HDM4	92	62.869	Sphenodon_punctatus
ENSSDUG00000008488	r3hdm4	99	83.984	ENSSPAG00000002562	r3hdm4	99	83.984	Stegastes_partitus
ENSSDUG00000008488	r3hdm4	91	58.996	ENSSSCG00000013419	R3HDM4	87	58.996	Sus_scrofa
ENSSDUG00000008488	r3hdm4	78	56.796	ENSTGUG00000000663	R3HDM4	98	57.282	Taeniopygia_guttata
ENSSDUG00000008488	r3hdm4	91	57.627	ENSTTRG00000001470	R3HDM4	97	57.627	Tursiops_truncatus
ENSSDUG00000008488	r3hdm4	86	59.111	ENSUAMG00000005751	R3HDM4	100	59.111	Ursus_americanus
ENSSDUG00000008488	r3hdm4	91	58.577	ENSVVUG00000022685	R3HDM4	87	58.577	Vulpes_vulpes
ENSSDUG00000008488	r3hdm4	97	48.016	ENSXETG00000033624	R3HDM4	97	48.016	Xenopus_tropicalis
ENSSDUG00000008488	r3hdm4	100	83.268	ENSXCOG00000005127	r3hdm4	100	83.268	Xiphophorus_couchianus
ENSSDUG00000008488	r3hdm4	100	83.594	ENSXMAG00000022875	r3hdm4	100	83.594	Xiphophorus_maculatus