EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000008499 (Gene tree)
Gene ID: 111235628
Gene Symbol: sf3b2
Alias: fb53c07|wu:fb53c07|wu:fb93b08|zgc:136773
Full Name: splicing factor 3b subunit 2
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 8483 bases
Position: chrBDQW01000531.1:1408875-1417357
Accession: 111235628
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000011694	DUF382	PF04037.13	1.7e-58	1	1
ENSSDUP00000011694	SAP	PF02037.27	4e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000011911	-	2493	XM_022764138	ENSSDUP00000011694	830 (aa)	XP_022619859	-

Gene Model

Click here to download ENSSDUG00000008499's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000008499's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000008499	sf3b2	85	71.484	ENSG00000087365	SF3B2	99	90.536	Homo_sapiens
ENSSDUG00000008499	sf3b2	97	84.125	ENSAPOG00000001974	sf3b2	56	98.583	Acanthochromis_polyacanthus
ENSSDUG00000008499	sf3b2	85	71.669	ENSAMEG00000017206	SF3B2	59	88.258	Ailuropoda_melanoleuca
ENSSDUG00000008499	sf3b2	87	82.759	ENSACIG00000000624	sf3b2	60	98.276	Amphilophus_citrinellus
ENSSDUG00000008499	sf3b2	97	98.866	ENSAOCG00000009207	sf3b2	91	99.042	Amphiprion_ocellaris
ENSSDUG00000008499	sf3b2	100	85.344	ENSAPEG00000002762	sf3b2	100	85.344	Amphiprion_percula
ENSSDUG00000008499	sf3b2	97	57.143	ENSACAG00000008615	SF3B2	59	71.078	Anolis_carolinensis
ENSSDUG00000008499	sf3b2	85	71.355	ENSANAG00000029120	SF3B2	60	88.425	Aotus_nancymaae
ENSSDUG00000008499	sf3b2	100	82.766	ENSACLG00000014771	sf3b2	59	90.996	Astatotilapia_calliptera
ENSSDUG00000008499	sf3b2	72	84.628	ENSAMXG00000007929	sf3b2	98	77.872	Astyanax_mexicanus
ENSSDUG00000008499	sf3b2	85	71.891	ENSBTAG00000002778	SF3B2	59	88.425	Bos_taurus
ENSSDUG00000008499	sf3b2	65	50.178	WBGene00021004	sftb-2	88	49.723	Caenorhabditis_elegans
ENSSDUG00000008499	sf3b2	85	71.484	ENSCJAG00000001656	SF3B2	60	88.425	Callithrix_jacchus
ENSSDUG00000008499	sf3b2	85	71.632	ENSCAFG00000013033	SF3B2	59	88.235	Canis_familiaris
ENSSDUG00000008499	sf3b2	85	71.632	ENSCAFG00020015382	SF3B2	59	88.235	Canis_lupus_dingo
ENSSDUG00000008499	sf3b2	85	71.891	ENSCHIG00000011211	SF3B2	59	88.425	Capra_hircus
ENSSDUG00000008499	sf3b2	85	71.613	ENSTSYG00000000959	SF3B2	60	88.235	Carlito_syrichta
ENSSDUG00000008499	sf3b2	75	63.990	ENSCAPG00000006065	SF3B2	67	91.525	Cavia_aperea
ENSSDUG00000008499	sf3b2	75	68.950	ENSCPOG00000008294	SF3B2	55	88.838	Cavia_porcellus
ENSSDUG00000008499	sf3b2	85	71.484	ENSCCAG00000035256	SF3B2	60	88.425	Cebus_capucinus
ENSSDUG00000008499	sf3b2	85	71.484	ENSCATG00000042240	SF3B2	60	88.425	Cercocebus_atys
ENSSDUG00000008499	sf3b2	85	70.801	ENSCLAG00000016852	SF3B2	60	87.666	Chinchilla_lanigera
ENSSDUG00000008499	sf3b2	85	71.484	ENSCSAG00000008121	SF3B2	59	88.425	Chlorocebus_sabaeus
ENSSDUG00000008499	sf3b2	88	87.755	ENSCHOG00000001476	SF3B2	51	85.938	Choloepus_hoffmanni
ENSSDUG00000008499	sf3b2	70	78.797	ENSCPBG00000022465	SF3B2	72	88.783	Chrysemys_picta_bellii
ENSSDUG00000008499	sf3b2	65	66.485	ENSCING00000005665	-	83	67.878	Ciona_intestinalis
ENSSDUG00000008499	sf3b2	70	59.742	ENSCSAVG00000002029	-	83	67.113	Ciona_savignyi
ENSSDUG00000008499	sf3b2	85	71.484	ENSCANG00000039680	SF3B2	60	88.425	Colobus_angolensis_palliatus
ENSSDUG00000008499	sf3b2	85	71.189	ENSCGRG00001015741	Sf3b2	60	87.856	Cricetulus_griseus_chok1gshd
ENSSDUG00000008499	sf3b2	85	71.189	ENSCGRG00000018110	Sf3b2	62	87.856	Cricetulus_griseus_crigri
ENSSDUG00000008499	sf3b2	97	66.142	ENSDNOG00000009484	SF3B2	86	87.666	Dasypus_novemcinctus
ENSSDUG00000008499	sf3b2	85	71.059	ENSDORG00000002495	Sf3b2	60	88.235	Dipodomys_ordii
ENSSDUG00000008499	sf3b2	79	74.552	ENSEBUG00000013703	sf3b2	91	75.627	Eptatretus_burgeri
ENSSDUG00000008499	sf3b2	85	71.410	ENSEASG00005004508	SF3B2	59	88.425	Equus_asinus_asinus
ENSSDUG00000008499	sf3b2	85	71.410	ENSECAG00000024461	SF3B2	59	88.425	Equus_caballus
ENSSDUG00000008499	sf3b2	100	75.679	ENSELUG00000005586	sf3b2	91	93.169	Esox_lucius
ENSSDUG00000008499	sf3b2	85	71.762	ENSFCAG00000013289	SF3B2	60	88.425	Felis_catus
ENSSDUG00000008499	sf3b2	77	65.401	ENSFALG00000014653	SF3B2	74	76.190	Ficedula_albicollis
ENSSDUG00000008499	sf3b2	85	69.924	ENSFDAG00000019806	SF3B2	59	88.235	Fukomys_damarensis
ENSSDUG00000008499	sf3b2	74	82.953	ENSGMOG00000012131	sf3b2	81	93.333	Gadus_morhua
ENSSDUG00000008499	sf3b2	98	65.618	ENSGAGG00000023916	SF3B2	61	88.425	Gopherus_agassizii
ENSSDUG00000008499	sf3b2	85	71.632	ENSGGOG00000028448	SF3B2	60	88.425	Gorilla_gorilla
ENSSDUG00000008499	sf3b2	100	82.880	ENSHBUG00000017349	sf3b2	61	97.701	Haplochromis_burtoni
ENSSDUG00000008499	sf3b2	85	70.930	ENSHGLG00000010807	SF3B2	60	87.666	Heterocephalus_glaber_female
ENSSDUG00000008499	sf3b2	85	71.226	ENSHGLG00100006361	SF3B2	60	87.666	Heterocephalus_glaber_male
ENSSDUG00000008499	sf3b2	85	71.410	ENSSTOG00000028892	SF3B2	60	88.046	Ictidomys_tridecemlineatus
ENSSDUG00000008499	sf3b2	85	70.475	ENSJJAG00000018193	Sf3b2	60	88.425	Jaculus_jaculus
ENSSDUG00000008499	sf3b2	100	82.864	ENSLBEG00000027739	sf3b2	74	97.893	Labrus_bergylta
ENSSDUG00000008499	sf3b2	85	71.077	ENSLAFG00000002128	SF3B2	60	88.046	Loxodonta_africana
ENSSDUG00000008499	sf3b2	85	71.392	ENSMFAG00000003064	SF3B2	60	88.258	Macaca_fascicularis
ENSSDUG00000008499	sf3b2	85	67.445	ENSMMUG00000011743	SF3B2	60	81.214	Macaca_mulatta
ENSSDUG00000008499	sf3b2	85	71.818	ENSMNEG00000034437	SF3B2	60	88.425	Macaca_nemestrina
ENSSDUG00000008499	sf3b2	85	71.818	ENSMLEG00000029373	SF3B2	60	88.425	Mandrillus_leucophaeus
ENSSDUG00000008499	sf3b2	85	71.613	ENSMICG00000008565	-	60	88.235	Microcebus_murinus
ENSSDUG00000008499	sf3b2	97	64.509	ENSMICG00000016942	-	62	86.338	Microcebus_murinus
ENSSDUG00000008499	sf3b2	85	71.189	ENSMOCG00000003136	Sf3b2	60	87.856	Microtus_ochrogaster
ENSSDUG00000008499	sf3b2	100	83.411	ENSMMOG00000012928	sf3b2	100	82.831	Mola_mola
ENSSDUG00000008499	sf3b2	70	73.175	ENSMODG00000025020	-	82	80.762	Monodelphis_domestica
ENSSDUG00000008499	sf3b2	85	70.801	MGP_CAROLIEiJ_G0022539	Sf3b2	60	87.666	Mus_caroli
ENSSDUG00000008499	sf3b2	85	70.801	ENSMUSG00000024853	Sf3b2	60	88.425	Mus_musculus
ENSSDUG00000008499	sf3b2	85	70.543	MGP_PahariEiJ_G0014036	Sf3b2	60	88.046	Mus_pahari
ENSSDUG00000008499	sf3b2	85	70.672	MGP_SPRETEiJ_G0023453	Sf3b2	60	87.856	Mus_spretus
ENSSDUG00000008499	sf3b2	85	71.632	ENSMPUG00000011349	SF3B2	59	88.235	Mustela_putorius_furo
ENSSDUG00000008499	sf3b2	85	71.373	ENSMLUG00000011136	SF3B2	59	87.856	Myotis_lucifugus
ENSSDUG00000008499	sf3b2	85	70.361	ENSNGAG00000012103	Sf3b2	60	87.666	Nannospalax_galili
ENSSDUG00000008499	sf3b2	85	69.821	ENSNLEG00000006007	SF3B2	75	85.199	Nomascus_leucogenys
ENSSDUG00000008499	sf3b2	97	62.416	ENSODEG00000017764	SF3B2	58	81.973	Octodon_degus
ENSSDUG00000008499	sf3b2	100	82.002	ENSONIG00000013068	sf3b2	60	97.701	Oreochromis_niloticus
ENSSDUG00000008499	sf3b2	85	65.722	ENSOANG00000012482	SF3B2	83	81.460	Ornithorhynchus_anatinus
ENSSDUG00000008499	sf3b2	97	67.010	ENSOCUG00000015722	-	62	87.666	Oryctolagus_cuniculus
ENSSDUG00000008499	sf3b2	61	46.293	ENSOCUG00000024154	-	59	59.633	Oryctolagus_cuniculus
ENSSDUG00000008499	sf3b2	100	80.023	ENSORLG00015022454	sf3b2	83	90.323	Oryzias_latipes_hsok
ENSSDUG00000008499	sf3b2	63	88.346	ENSOGAG00000005799	SF3B2	59	87.666	Otolemur_garnettii
ENSSDUG00000008499	sf3b2	97	65.769	ENSOARG00000002125	SF3B2	71	87.856	Ovis_aries
ENSSDUG00000008499	sf3b2	85	71.632	ENSPPAG00000007359	SF3B2	60	87.666	Pan_paniscus
ENSSDUG00000008499	sf3b2	85	71.762	ENSPPRG00000013334	SF3B2	60	88.425	Panthera_pardus
ENSSDUG00000008499	sf3b2	85	71.762	ENSPTIG00000015022	SF3B2	60	88.425	Panthera_tigris_altaica
ENSSDUG00000008499	sf3b2	85	71.632	ENSPTRG00000003912	SF3B2	60	87.666	Pan_troglodytes
ENSSDUG00000008499	sf3b2	85	71.484	ENSPANG00000008593	SF3B2	60	88.425	Papio_anubis
ENSSDUG00000008499	sf3b2	100	76.404	ENSPKIG00000016576	sf3b2	88	85.897	Paramormyrops_kingsleyae
ENSSDUG00000008499	sf3b2	90	71.142	ENSPSIG00000003158	SF3B2	71	88.994	Pelodiscus_sinensis
ENSSDUG00000008499	sf3b2	85	71.059	ENSPEMG00000015437	Sf3b2	60	87.856	Peromyscus_maniculatus_bairdii
ENSSDUG00000008499	sf3b2	85	70.649	ENSPCIG00000008381	SF3B2	62	88.235	Phascolarctos_cinereus
ENSSDUG00000008499	sf3b2	100	75.761	ENSPFOG00000002552	sf3b2	60	90.840	Poecilia_formosa
ENSSDUG00000008499	sf3b2	85	71.503	ENSPCAG00000005129	SF3B2	59	87.476	Procavia_capensis
ENSSDUG00000008499	sf3b2	85	71.355	ENSPCOG00000025375	SF3B2	60	88.235	Propithecus_coquereli
ENSSDUG00000008499	sf3b2	57	94.298	ENSPVAG00000005466	-	73	94.298	Pteropus_vampyrus
ENSSDUG00000008499	sf3b2	85	70.930	ENSRNOG00000020412	Sf3b2	60	88.235	Rattus_norvegicus
ENSSDUG00000008499	sf3b2	85	71.484	ENSRBIG00000034065	SF3B2	60	88.425	Rhinopithecus_bieti
ENSSDUG00000008499	sf3b2	85	71.484	ENSRROG00000034496	SF3B2	60	88.425	Rhinopithecus_roxellana
ENSSDUG00000008499	sf3b2	97	67.310	ENSSBOG00000026337	SF3B2	59	87.666	Saimiri_boliviensis_boliviensis
ENSSDUG00000008499	sf3b2	85	68.366	ENSSHAG00000010933	-	58	84.221	Sarcophilus_harrisii
ENSSDUG00000008499	sf3b2	63	74.109	ENSSHAG00000018043	-	63	74.102	Sarcophilus_harrisii
ENSSDUG00000008499	sf3b2	63	95.247	ENSSFOG00015021125	sf3b2	59	95.211	Scleropages_formosus
ENSSDUG00000008499	sf3b2	63	97.701	ENSSMAG00000004079	sf3b2	62	97.701	Scophthalmus_maximus
ENSSDUG00000008499	sf3b2	96	100.000	ENSSLDG00000006838	sf3b2	89	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000008499	sf3b2	70	79.777	ENSSPUG00000009198	SF3B2	61	88.783	Sphenodon_punctatus
ENSSDUG00000008499	sf3b2	97	99.053	ENSSPAG00000004406	sf3b2	88	99.042	Stegastes_partitus
ENSSDUG00000008499	sf3b2	85	71.632	ENSSSCG00000012957	SF3B2	59	88.615	Sus_scrofa
ENSSDUG00000008499	sf3b2	100	67.627	ENSTRUG00000007611	sf3b2	97	77.164	Takifugu_rubripes
ENSSDUG00000008499	sf3b2	87	78.486	ENSTNIG00000007441	sf3b2	100	75.708	Tetraodon_nigroviridis
ENSSDUG00000008499	sf3b2	80	66.022	ENSTBEG00000004258	SF3B2	52	87.692	Tupaia_belangeri
ENSSDUG00000008499	sf3b2	85	71.762	ENSTTRG00000014339	SF3B2	59	88.425	Tursiops_truncatus
ENSSDUG00000008499	sf3b2	83	71.162	ENSUAMG00000020754	SF3B2	55	87.375	Ursus_americanus
ENSSDUG00000008499	sf3b2	85	71.762	ENSUMAG00000010994	SF3B2	59	88.425	Ursus_maritimus
ENSSDUG00000008499	sf3b2	57	83.333	ENSVPAG00000008695	SF3B2	66	83.333	Vicugna_pacos
ENSSDUG00000008499	sf3b2	85	71.632	ENSVVUG00000027029	SF3B2	59	88.235	Vulpes_vulpes
ENSSDUG00000008499	sf3b2	82	91.625	ENSXCOG00000008943	sf3b2	94	88.095	Xiphophorus_couchianus