EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000008502 (Gene tree)
Gene ID: 111218793
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 20171 bases
Position: chrBDQW01000052.1:2619578-2639748
Accession: 111218793
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000011926	KH_1	PF00013.29	6e-49	1	3
ENSSDUP00000011926	KH_1	PF00013.29	6e-49	2	3
ENSSDUP00000011926	KH_1	PF00013.29	6e-49	3	3
ENSSDUP00000011810	KH_1	PF00013.29	8.1e-46	1	3
ENSSDUP00000011810	KH_1	PF00013.29	8.1e-46	2	3
ENSSDUP00000011810	KH_1	PF00013.29	8.1e-46	3	3
ENSSDUP00000011967	KH_1	PF00013.29	1.1e-45	1	3
ENSSDUP00000011967	KH_1	PF00013.29	1.1e-45	2	3
ENSSDUP00000011967	KH_1	PF00013.29	1.1e-45	3	3
ENSSDUP00000011932	KH_1	PF00013.29	1.4e-45	1	3
ENSSDUP00000011932	KH_1	PF00013.29	1.4e-45	2	3
ENSSDUP00000011932	KH_1	PF00013.29	1.4e-45	3	3
ENSSDUP00000011926	KH_2	PF07650.17	1.5e-10	1	1
ENSSDUP00000011810	KH_2	PF07650.17	1.3e-09	1	1
ENSSDUP00000011967	KH_2	PF07650.17	1.6e-09	1	1
ENSSDUP00000011932	KH_2	PF07650.17	2.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000012151	-	978	-	ENSSDUP00000011932	325 (aa)	-	-
ENSSDUT00000012027	-	921	-	ENSSDUP00000011810	306 (aa)	-	-
ENSSDUT00000012185	-	915	-	ENSSDUP00000011967	304 (aa)	-	-
ENSSDUT00000012147	-	984	XM_022741265	ENSSDUP00000011926	327 (aa)	XP_022596986	-

Gene Model

Click here to download ENSSDUG00000008502's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000008502's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000008502	-	63	38.235	ENSSDUG00000002110	KHSRP	52	38.235
ENSSDUG00000008502	-	63	43.636	ENSSDUG00000002390	khsrp	68	43.636
ENSSDUG00000008502	-	88	58.983	ENSSDUG00000017719	pcbp4	82	54.730
ENSSDUG00000008502	-	99	73.377	ENSSDUG00000018636	PCBP2	96	74.194
ENSSDUG00000008502	-	76	54.545	ENSSDUG00000022165	hnrnpk	55	54.545
ENSSDUG00000008502	-	91	41.667	ENSSDUG00000020704	nova1	65	35.106
ENSSDUG00000008502	-	85	37.500	ENSSDUG00000023495	fubp3	67	36.923
ENSSDUG00000008502	-	78	46.914	ENSSDUG00000023797	hnrpkl	57	46.914
ENSSDUG00000008502	-	98	70.684	ENSSDUG00000021325	pcbp2	96	73.418
ENSSDUG00000008502	-	89	39.683	ENSSDUG00000005975	-	61	39.683
ENSSDUG00000008502	-	97	55.763	ENSSDUG00000015540	-	71	58.075
ENSSDUG00000008502	-	73	66.529	ENSSDUG00000019371	zgc:110045	70	66.529
ENSSDUG00000008502	-	88	32.979	ENSSDUG00000001795	-	52	32.979
ENSSDUG00000008502	-	87	43.636	ENSSDUG00000017581	igf2bp2b	59	45.283
ENSSDUG00000008502	-	95	88.822	ENSSDUG00000011608	pcbp3	99	88.822

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000008502	-	100	93.636	ENSAPOG00000016582	-	100	93.636	Acanthochromis_polyacanthus
ENSSDUG00000008502	-	95	91.640	ENSAPOG00000020003	pcbp3	86	91.640	Acanthochromis_polyacanthus
ENSSDUG00000008502	-	98	81.424	ENSAMEG00000001697	-	96	82.493	Ailuropoda_melanoleuca
ENSSDUG00000008502	-	100	90.988	ENSACIG00000010933	pcbp3	100	90.988	Amphilophus_citrinellus
ENSSDUG00000008502	-	95	93.987	ENSACIG00000002739	-	97	93.987	Amphilophus_citrinellus
ENSSDUG00000008502	-	84	90.210	ENSAOCG00000007806	-	97	90.210	Amphiprion_ocellaris
ENSSDUG00000008502	-	97	89.375	ENSAOCG00000008592	-	100	89.375	Amphiprion_ocellaris
ENSSDUG00000008502	-	95	93.590	ENSAPEG00000005209	-	97	93.590	Amphiprion_percula
ENSSDUG00000008502	-	100	89.205	ENSAPEG00000008011	pcbp3	100	89.205	Amphiprion_percula
ENSSDUG00000008502	-	95	93.891	ENSATEG00000009833	-	97	93.891	Anabas_testudineus
ENSSDUG00000008502	-	95	89.394	ENSATEG00000015787	-	100	89.394	Anabas_testudineus
ENSSDUG00000008502	-	98	73.025	ENSAPLG00000008951	-	82	73.025	Anas_platyrhynchos
ENSSDUG00000008502	-	98	82.075	ENSAPLG00000002975	-	95	86.604	Anas_platyrhynchos
ENSSDUG00000008502	-	93	83.862	ENSACAG00000004607	-	96	83.862	Anolis_carolinensis
ENSSDUG00000008502	-	94	81.212	ENSACAG00000009819	-	96	81.212	Anolis_carolinensis
ENSSDUG00000008502	-	91	71.186	ENSANAG00000030702	-	96	90.476	Aotus_nancymaae
ENSSDUG00000008502	-	100	93.030	ENSACLG00000003801	-	100	93.030	Astatotilapia_calliptera
ENSSDUG00000008502	-	100	88.352	ENSACLG00000011835	pcbp3	100	88.352	Astatotilapia_calliptera
ENSSDUG00000008502	-	99	64.634	ENSAMXG00000001760	zgc:110045	73	66.667	Astyanax_mexicanus
ENSSDUG00000008502	-	100	90.857	ENSAMXG00000003440	pcbp3	100	90.857	Astyanax_mexicanus
ENSSDUG00000008502	-	95	89.711	ENSAMXG00000013588	-	100	89.711	Astyanax_mexicanus
ENSSDUG00000008502	-	94	84.836	ENSCAFG00020019472	-	87	84.836	Canis_lupus_dingo
ENSSDUG00000008502	-	98	85.855	ENSCSAG00000007440	-	87	90.554	Chlorocebus_sabaeus
ENSSDUG00000008502	-	99	78.551	ENSCPBG00000000733	-	76	78.551	Chrysemys_picta_bellii
ENSSDUG00000008502	-	98	86.997	ENSCPBG00000012151	-	95	86.997	Chrysemys_picta_bellii
ENSSDUG00000008502	-	95	89.677	ENSCSEG00000000822	pcbp3	99	89.677	Cynoglossus_semilaevis
ENSSDUG00000008502	-	92	86.730	ENSCSEG00000016984	-	96	78.367	Cynoglossus_semilaevis
ENSSDUG00000008502	-	100	89.174	ENSCVAG00000014482	pcbp3	100	89.174	Cyprinodon_variegatus
ENSSDUG00000008502	-	100	92.727	ENSCVAG00000005262	-	100	92.727	Cyprinodon_variegatus
ENSSDUG00000008502	-	100	91.143	ENSDARG00000054378	pcbp3	100	91.143	Danio_rerio
ENSSDUG00000008502	-	98	73.684	ENSETEG00000015988	-	95	78.502	Echinops_telfairi
ENSSDUG00000008502	-	98	73.529	ENSEBUG00000007485	-	80	82.199	Eptatretus_burgeri
ENSSDUG00000008502	-	85	67.857	ENSEBUG00000016192	pcbp3	99	69.118	Eptatretus_burgeri
ENSSDUG00000008502	-	90	63.745	ENSEBUG00000005495	pcbp3	74	63.745	Eptatretus_burgeri
ENSSDUG00000008502	-	100	89.235	ENSELUG00000003521	pcbp3	100	89.235	Esox_lucius
ENSSDUG00000008502	-	100	92.424	ENSELUG00000001560	-	91	92.424	Esox_lucius
ENSSDUG00000008502	-	98	73.297	ENSFALG00000004411	-	77	73.297	Ficedula_albicollis
ENSSDUG00000008502	-	98	85.855	ENSFALG00000003949	-	95	90.554	Ficedula_albicollis
ENSSDUG00000008502	-	95	92.628	ENSFHEG00000006539	-	97	92.628	Fundulus_heteroclitus
ENSSDUG00000008502	-	97	89.590	ENSFHEG00000016615	pcbp3	97	89.590	Fundulus_heteroclitus
ENSSDUG00000008502	-	98	74.540	ENSGMOG00000011992	pcbp3	96	75.893	Gadus_morhua
ENSSDUG00000008502	-	94	66.964	ENSGMOG00000008611	-	100	66.964	Gadus_morhua
ENSSDUG00000008502	-	93	84.012	ENSGALG00000004394	-	96	84.012	Gallus_gallus
ENSSDUG00000008502	-	98	76.687	ENSGALG00000013155	-	98	81.424	Gallus_gallus
ENSSDUG00000008502	-	95	87.273	ENSGAFG00000011430	pcbp3	96	87.273	Gambusia_affinis
ENSSDUG00000008502	-	100	93.030	ENSGAFG00000010274	-	100	93.030	Gambusia_affinis
ENSSDUG00000008502	-	98	74.783	ENSGACG00000014955	-	97	77.620	Gasterosteus_aculeatus
ENSSDUG00000008502	-	98	83.489	ENSGACG00000002266	-	97	86.228	Gasterosteus_aculeatus
ENSSDUG00000008502	-	91	84.977	ENSGAGG00000006956	-	96	79.915	Gopherus_agassizii
ENSSDUG00000008502	-	87	80.899	ENSGAGG00000000271	-	100	84.815	Gopherus_agassizii
ENSSDUG00000008502	-	100	88.604	ENSHBUG00000010697	pcbp3	98	90.735	Haplochromis_burtoni
ENSSDUG00000008502	-	100	93.030	ENSHBUG00000021782	-	100	93.030	Haplochromis_burtoni
ENSSDUG00000008502	-	100	89.429	ENSHCOG00000017868	pcbp3	100	89.429	Hippocampus_comes
ENSSDUG00000008502	-	95	91.401	ENSHCOG00000006067	-	97	91.401	Hippocampus_comes
ENSSDUG00000008502	-	95	91.640	ENSIPUG00000006238	pcbp3	97	91.640	Ictalurus_punctatus
ENSSDUG00000008502	-	100	89.205	ENSKMAG00000003046	pcbp3	100	89.205	Kryptolebias_marmoratus
ENSSDUG00000008502	-	100	92.121	ENSKMAG00000018530	-	100	92.121	Kryptolebias_marmoratus
ENSSDUG00000008502	-	100	86.018	ENSLBEG00000006542	-	100	86.018	Labrus_bergylta
ENSSDUG00000008502	-	96	90.735	ENSLBEG00000006201	pcbp3	96	90.735	Labrus_bergylta
ENSSDUG00000008502	-	99	72.826	ENSLACG00000010804	zgc:110045	77	72.826	Latimeria_chalumnae
ENSSDUG00000008502	-	93	81.766	ENSLACG00000010386	pcbp3	74	81.766	Latimeria_chalumnae
ENSSDUG00000008502	-	99	75.915	ENSLOCG00000005058	zgc:110045	80	81.288	Lepisosteus_oculatus
ENSSDUG00000008502	-	93	89.297	ENSLOCG00000009369	pcbp3	96	89.297	Lepisosteus_oculatus
ENSSDUG00000008502	-	95	91.290	ENSMAMG00000022336	pcbp3	93	91.290	Mastacembelus_armatus
ENSSDUG00000008502	-	95	92.605	ENSMAMG00000011620	-	97	92.605	Mastacembelus_armatus
ENSSDUG00000008502	-	100	88.857	ENSMZEG00005008993	pcbp3	100	88.857	Maylandia_zebra
ENSSDUG00000008502	-	100	93.134	ENSMZEG00005014882	-	100	93.134	Maylandia_zebra
ENSSDUG00000008502	-	98	73.297	ENSMGAG00000006794	-	77	73.297	Meleagris_gallopavo
ENSSDUG00000008502	-	93	76.437	ENSMGAG00000001883	-	96	76.437	Meleagris_gallopavo
ENSSDUG00000008502	-	95	92.605	ENSMMOG00000005216	-	97	92.605	Mola_mola
ENSSDUG00000008502	-	95	88.571	ENSMMOG00000000730	pcbp3	88	88.571	Mola_mola
ENSSDUG00000008502	-	70	78.037	ENSMODG00000027884	-	93	78.037	Monodelphis_domestica
ENSSDUG00000008502	-	100	89.368	ENSMALG00000000691	pcbp3	100	89.368	Monopterus_albus
ENSSDUG00000008502	-	98	77.259	ENSMPUG00000001779	-	88	81.790	Mustela_putorius_furo
ENSSDUG00000008502	-	100	92.836	ENSNBRG00000016714	-	100	92.836	Neolamprologus_brichardi
ENSSDUG00000008502	-	100	89.306	ENSNBRG00000016409	-	100	89.306	Neolamprologus_brichardi
ENSSDUG00000008502	-	94	83.188	ENSOPRG00000003431	-	99	83.188	Ochotona_princeps
ENSSDUG00000008502	-	95	92.357	ENSONIG00000004611	-	97	92.357	Oreochromis_niloticus
ENSSDUG00000008502	-	95	83.807	ENSONIG00000012122	-	98	83.807	Oreochromis_niloticus
ENSSDUG00000008502	-	98	85.526	ENSOCUG00000002696	-	87	90.228	Oryctolagus_cuniculus
ENSSDUG00000008502	-	95	91.054	ENSORLG00000000059	pcbp3	100	91.054	Oryzias_latipes
ENSSDUG00000008502	-	99	92.401	ENSORLG00000022739	-	99	92.401	Oryzias_latipes
ENSSDUG00000008502	-	95	91.054	ENSORLG00020012671	pcbp3	97	91.054	Oryzias_latipes_hni
ENSSDUG00000008502	-	99	92.169	ENSORLG00020006124	-	99	92.169	Oryzias_latipes_hni
ENSSDUG00000008502	-	99	92.401	ENSORLG00015008051	-	99	92.401	Oryzias_latipes_hsok
ENSSDUG00000008502	-	95	91.054	ENSORLG00015000429	pcbp3	97	91.054	Oryzias_latipes_hsok
ENSSDUG00000008502	-	91	87.770	ENSOMEG00000020811	pcbp3	97	91.844	Oryzias_melastigma
ENSSDUG00000008502	-	95	92.283	ENSOMEG00000020162	-	97	92.283	Oryzias_melastigma
ENSSDUG00000008502	-	98	75.072	ENSOGAG00000008044	-	96	79.943	Otolemur_garnettii
ENSSDUG00000008502	-	91	79.426	ENSPKIG00000020913	-	91	80.383	Paramormyrops_kingsleyae
ENSSDUG00000008502	-	100	92.121	ENSPKIG00000019329	pcbp3	100	92.121	Paramormyrops_kingsleyae
ENSSDUG00000008502	-	74	76.923	ENSPSIG00000008350	-	72	76.923	Pelodiscus_sinensis
ENSSDUG00000008502	-	98	72.897	ENSPSIG00000014970	-	95	77.778	Pelodiscus_sinensis
ENSSDUG00000008502	-	100	89.143	ENSPMGG00000022383	pcbp3	100	89.143	Periophthalmus_magnuspinnatus
ENSSDUG00000008502	-	91	85.638	ENSPMAG00000004637	-	99	85.340	Petromyzon_marinus
ENSSDUG00000008502	-	99	66.881	ENSPMAG00000004551	pcbp3	90	68.770	Petromyzon_marinus
ENSSDUG00000008502	-	93	88.685	ENSPCIG00000028092	-	96	88.685	Phascolarctos_cinereus
ENSSDUG00000008502	-	98	85.623	ENSPLAG00000004074	-	89	89.062	Poecilia_latipinna
ENSSDUG00000008502	-	100	77.157	ENSPLAG00000011449	pcbp3	100	77.157	Poecilia_latipinna
ENSSDUG00000008502	-	100	93.175	ENSPMEG00000006653	-	100	93.175	Poecilia_mexicana
ENSSDUG00000008502	-	100	87.853	ENSPMEG00000021239	pcbp3	100	87.853	Poecilia_mexicana
ENSSDUG00000008502	-	95	89.032	ENSPREG00000015736	pcbp3	99	89.032	Poecilia_reticulata
ENSSDUG00000008502	-	95	92.605	ENSPREG00000020585	-	97	92.605	Poecilia_reticulata
ENSSDUG00000008502	-	95	90.735	ENSPNYG00000012326	pcbp3	95	90.735	Pundamilia_nyererei
ENSSDUG00000008502	-	95	92.605	ENSPNYG00000013205	-	97	92.605	Pundamilia_nyererei
ENSSDUG00000008502	-	95	92.038	ENSPNAG00000015104	pcbp3	97	92.038	Pygocentrus_nattereri
ENSSDUG00000008502	-	100	87.714	ENSPNAG00000008541	-	98	90.032	Pygocentrus_nattereri
ENSSDUG00000008502	-	98	85.855	ENSRNOG00000001245	Pcbp3	95	90.554	Rattus_norvegicus
ENSSDUG00000008502	-	98	75.949	ENSRBIG00000028177	-	96	74.581	Rhinopithecus_bieti
ENSSDUG00000008502	-	98	80.864	ENSSHAG00000007890	-	96	91.282	Sarcophilus_harrisii
ENSSDUG00000008502	-	100	88.539	ENSSFOG00015014706	pcbp3	100	88.539	Scleropages_formosus
ENSSDUG00000008502	-	100	92.727	ENSSFOG00015010205	pcbp3	100	92.727	Scleropages_formosus
ENSSDUG00000008502	-	98	78.317	ENSSFOG00015007118	-	93	82.623	Scleropages_formosus
ENSSDUG00000008502	-	100	92.727	ENSSMAG00000003135	-	100	92.727	Scophthalmus_maximus
ENSSDUG00000008502	-	95	91.290	ENSSMAG00000011929	pcbp3	97	91.290	Scophthalmus_maximus
ENSSDUG00000008502	-	100	93.636	ENSSLDG00000020161	-	100	93.636	Seriola_lalandi_dorsalis
ENSSDUG00000008502	-	95	88.822	ENSSLDG00000008518	pcbp3	99	88.822	Seriola_lalandi_dorsalis
ENSSDUG00000008502	-	91	84.653	ENSSPUG00000013214	-	91	85.500	Sphenodon_punctatus
ENSSDUG00000008502	-	100	80.523	ENSSPAG00000023341	-	100	80.523	Stegastes_partitus
ENSSDUG00000008502	-	84	90.210	ENSSPAG00000004190	-	97	90.210	Stegastes_partitus
ENSSDUG00000008502	-	99	80.130	ENSTGUG00000008158	-	96	84.039	Taeniopygia_guttata
ENSSDUG00000008502	-	98	77.607	ENSTGUG00000003316	-	96	81.763	Taeniopygia_guttata
ENSSDUG00000008502	-	100	90.265	ENSTRUG00000013604	pcbp3	100	90.265	Takifugu_rubripes
ENSSDUG00000008502	-	94	87.013	ENSTRUG00000006280	-	96	87.013	Takifugu_rubripes
ENSSDUG00000008502	-	98	75.434	ENSTTRG00000015075	-	96	81.792	Tursiops_truncatus
ENSSDUG00000008502	-	98	80.247	ENSXETG00000011483	pcbp1	96	83.333	Xenopus_tropicalis
ENSSDUG00000008502	-	93	71.955	ENSXETG00000010491	pcbp2	77	71.955	Xenopus_tropicalis
ENSSDUG00000008502	-	100	87.853	ENSXCOG00000020481	pcbp3	100	87.853	Xiphophorus_couchianus
ENSSDUG00000008502	-	100	93.333	ENSXMAG00000028711	-	100	93.333	Xiphophorus_maculatus
ENSSDUG00000008502	-	100	89.205	ENSXMAG00000008175	pcbp3	100	89.205	Xiphophorus_maculatus