EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000008682 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 1490 bases
Position: chrBDQW01000383.1:612824-614313
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000012222	zf-C2H2	PF00096.26	1.5e-18	1	3
ENSSDUP00000012222	zf-C2H2	PF00096.26	1.5e-18	2	3
ENSSDUP00000012222	zf-C2H2	PF00096.26	1.5e-18	3	3
ENSSDUP00000012222	zf-met	PF12874.7	1.8e-08	1	3
ENSSDUP00000012222	zf-met	PF12874.7	1.8e-08	2	3
ENSSDUP00000012222	zf-met	PF12874.7	1.8e-08	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000012442	-	414	-	ENSSDUP00000012222	137 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000008682's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000008682's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000008682	-	75	56.250	ENSSDUG00000002195	-	88	47.872
ENSSDUG00000008682	-	99	66.250	ENSSDUG00000009439	-	95	68.571
ENSSDUG00000008682	-	67	54.167	ENSSDUG00000004089	-	90	54.167
ENSSDUG00000008682	-	93	59.524	ENSSDUG00000015622	-	98	50.000
ENSSDUG00000008682	-	99	58.750	ENSSDUG00000015182	-	83	58.750
ENSSDUG00000008682	-	98	67.500	ENSSDUG00000009563	-	94	71.250
ENSSDUG00000008682	-	74	51.220	ENSSDUG00000006808	-	64	51.220
ENSSDUG00000008682	-	90	43.750	ENSSDUG00000010305	-	57	43.750
ENSSDUG00000008682	-	69	51.852	ENSSDUG00000022412	znf648	62	51.852
ENSSDUG00000008682	-	82	58.333	ENSSDUG00000015159	-	99	58.333
ENSSDUG00000008682	-	87	58.491	ENSSDUG00000009421	-	99	58.491
ENSSDUG00000008682	-	100	61.728	ENSSDUG00000006426	-	99	60.759
ENSSDUG00000008682	-	74	44.318	ENSSDUG00000004892	-	50	44.318
ENSSDUG00000008682	-	99	87.879	ENSSDUG00000009534	-	81	87.879
ENSSDUG00000008682	-	98	63.750	ENSSDUG00000009425	-	75	63.750
ENSSDUG00000008682	-	61	45.205	ENSSDUG00000018060	snai2	51	45.205
ENSSDUG00000008682	-	99	45.588	ENSSDUG00000015254	-	96	59.459
ENSSDUG00000008682	-	61	43.373	ENSSDUG00000012926	-	59	43.373
ENSSDUG00000008682	-	97	68.276	ENSSDUG00000008943	-	99	68.276
ENSSDUG00000008682	-	66	42.169	ENSSDUG00000017250	-	52	42.169
ENSSDUG00000008682	-	74	53.659	ENSSDUG00000020810	-	66	53.659
ENSSDUG00000008682	-	100	47.619	ENSSDUG00000006463	-	85	47.619
ENSSDUG00000008682	-	58	64.103	ENSSDUG00000015204	-	91	64.103
ENSSDUG00000008682	-	98	53.750	ENSSDUG00000004835	-	74	53.750
ENSSDUG00000008682	-	98	52.439	ENSSDUG00000020788	-	91	52.439
ENSSDUG00000008682	-	99	72.881	ENSSDUG00000005401	-	96	70.833
ENSSDUG00000008682	-	72	52.439	ENSSDUG00000000799	-	68	52.439
ENSSDUG00000008682	-	72	65.000	ENSSDUG00000005323	-	89	65.000
ENSSDUG00000008682	-	74	46.341	ENSSDUG00000000695	-	71	46.341
ENSSDUG00000008682	-	69	55.000	ENSSDUG00000002488	-	57	55.000
ENSSDUG00000008682	-	74	61.290	ENSSDUG00000004650	-	93	61.290
ENSSDUG00000008682	-	61	55.000	ENSSDUG00000001263	-	92	55.000
ENSSDUG00000008682	-	98	64.286	ENSSDUG00000009601	-	99	58.750
ENSSDUG00000008682	-	98	53.731	ENSSDUG00000004867	-	99	58.750
ENSSDUG00000008682	-	72	56.140	ENSSDUG00000023764	-	95	56.140
ENSSDUG00000008682	-	99	53.571	ENSSDUG00000023765	-	96	53.571
ENSSDUG00000008682	-	69	41.463	ENSSDUG00000000889	-	57	41.463
ENSSDUG00000008682	-	88	51.250	ENSSDUG00000020397	prdm5	55	51.250
ENSSDUG00000008682	-	98	52.459	ENSSDUG00000000946	-	99	48.780
ENSSDUG00000008682	-	100	61.250	ENSSDUG00000015191	-	99	61.250
ENSSDUG00000008682	-	99	49.315	ENSSDUG00000011244	-	79	49.315
ENSSDUG00000008682	-	99	53.659	ENSSDUG00000019911	-	73	53.659
ENSSDUG00000008682	-	76	50.877	ENSSDUG00000003003	znf319b	73	50.877
ENSSDUG00000008682	-	93	49.057	ENSSDUG00000013904	-	67	49.057
ENSSDUG00000008682	-	85	45.122	ENSSDUG00000002174	-	66	45.122
ENSSDUG00000008682	-	72	51.316	ENSSDUG00000015013	-	59	53.247
ENSSDUG00000008682	-	98	48.571	ENSSDUG00000020774	-	76	48.571
ENSSDUG00000008682	-	72	51.724	ENSSDUG00000019932	ZNF319	62	51.724
ENSSDUG00000008682	-	69	48.148	ENSSDUG00000011604	gfi1b	54	48.148
ENSSDUG00000008682	-	76	47.436	ENSSDUG00000016450	-	58	47.436
ENSSDUG00000008682	-	98	48.148	ENSSDUG00000000786	-	91	56.897
ENSSDUG00000008682	-	98	65.000	ENSSDUG00000007336	-	97	67.164
ENSSDUG00000008682	-	66	48.352	ENSSDUG00000000705	-	58	48.352
ENSSDUG00000008682	-	98	53.750	ENSSDUG00000009553	-	78	60.000
ENSSDUG00000008682	-	99	63.158	ENSSDUG00000009577	-	80	63.158
ENSSDUG00000008682	-	99	50.000	ENSSDUG00000020595	-	94	50.000
ENSSDUG00000008682	-	61	52.500	ENSSDUG00000006740	-	73	52.830
ENSSDUG00000008682	-	58	55.000	ENSSDUG00000022914	-	50	55.000
ENSSDUG00000008682	-	79	48.718	ENSSDUG00000020805	-	80	48.718

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000008682	-	85	46.296	ENSACIG00000007882	-	73	46.296	Amphilophus_citrinellus
ENSSDUG00000008682	-	72	46.914	ENSACIG00000008886	znf1164	76	46.914	Amphilophus_citrinellus
ENSSDUG00000008682	-	98	57.692	ENSACIG00000000360	si:ch211-241b2.1	97	57.692	Amphilophus_citrinellus
ENSSDUG00000008682	-	99	56.098	ENSATEG00000008683	si:ch211-241b2.1	90	56.098	Anabas_testudineus
ENSSDUG00000008682	-	98	46.429	ENSATEG00000008667	-	62	46.429	Anabas_testudineus
ENSSDUG00000008682	-	85	46.250	ENSACLG00000017449	-	53	46.250	Astatotilapia_calliptera
ENSSDUG00000008682	-	98	58.750	ENSACLG00000024670	-	94	58.750	Astatotilapia_calliptera
ENSSDUG00000008682	-	72	42.391	ENSACLG00000000521	-	75	42.391	Astatotilapia_calliptera
ENSSDUG00000008682	-	71	53.425	ENSAMXG00000041650	-	84	53.425	Astyanax_mexicanus
ENSSDUG00000008682	-	71	54.430	ENSAMXG00000043291	-	66	54.430	Astyanax_mexicanus
ENSSDUG00000008682	-	76	44.444	ENSCSEG00000015585	-	69	44.444	Cynoglossus_semilaevis
ENSSDUG00000008682	-	99	57.692	ENSDARG00000092605	znf1003	92	57.692	Danio_rerio
ENSSDUG00000008682	-	99	48.889	ENSDARG00000102053	znf1164	100	48.780	Danio_rerio
ENSSDUG00000008682	-	100	49.091	ENSDARG00000093672	zgc:171435	100	49.091	Danio_rerio
ENSSDUG00000008682	-	99	41.259	ENSDARG00000071833	znf1162	100	52.941	Danio_rerio
ENSSDUG00000008682	-	99	50.000	ENSDARG00000053165	zgc:113377	100	50.000	Danio_rerio
ENSSDUG00000008682	-	99	52.727	ENSDARG00000099890	CU207221.2	99	52.727	Danio_rerio
ENSSDUG00000008682	-	96	43.571	ENSDARG00000093875	zgc:174224	72	44.286	Danio_rerio
ENSSDUG00000008682	-	99	45.833	ENSDARG00000101425	si:dkey-1b17.5	72	44.218	Danio_rerio
ENSSDUG00000008682	-	99	55.556	ENSDARG00000113011	zgc:113102	99	52.439	Danio_rerio
ENSSDUG00000008682	-	99	50.000	ENSDARG00000100882	znf1154	90	50.000	Danio_rerio
ENSSDUG00000008682	-	99	50.667	ENSDARG00000093562	si:dkey-20i20.7	86	50.667	Danio_rerio
ENSSDUG00000008682	-	100	52.500	ENSDARG00000088507	znf982	100	52.500	Danio_rerio
ENSSDUG00000008682	-	99	46.875	ENSDARG00000099618	si:dkey-1b17.6	99	52.830	Danio_rerio
ENSSDUG00000008682	-	99	44.776	ENSDARG00000101044	si:ch73-138e16.6	95	47.761	Danio_rerio
ENSSDUG00000008682	-	99	52.439	ENSDARG00000105056	znf45l	99	52.439	Danio_rerio
ENSSDUG00000008682	-	99	50.667	ENSDARG00000092246	si:dkey-20i20.3	83	50.667	Danio_rerio
ENSSDUG00000008682	-	100	48.913	ENSDARG00000111899	zgc:171435	89	48.913	Danio_rerio
ENSSDUG00000008682	-	99	48.000	ENSDARG00000094343	si:dkey-20i20.8	80	48.000	Danio_rerio
ENSSDUG00000008682	-	99	50.000	ENSFHEG00000013152	-	86	50.000	Fundulus_heteroclitus
ENSSDUG00000008682	-	66	53.947	ENSFHEG00000018209	-	67	53.947	Fundulus_heteroclitus
ENSSDUG00000008682	-	99	54.348	ENSFHEG00000014023	-	76	54.348	Fundulus_heteroclitus
ENSSDUG00000008682	-	98	51.765	ENSHBUG00000009953	-	89	51.765	Haplochromis_burtoni
ENSSDUG00000008682	-	98	60.000	ENSHBUG00000018916	-	88	60.000	Haplochromis_burtoni
ENSSDUG00000008682	-	66	55.000	ENSKMAG00000009563	-	73	52.857	Kryptolebias_marmoratus
ENSSDUG00000008682	-	98	51.250	ENSMAMG00000014743	-	70	51.250	Mastacembelus_armatus
ENSSDUG00000008682	-	97	60.000	ENSMZEG00005026470	-	81	60.000	Maylandia_zebra
ENSSDUG00000008682	-	94	59.259	ENSMZEG00005027793	-	97	59.259	Maylandia_zebra
ENSSDUG00000008682	-	74	48.718	ENSMZEG00005021426	-	73	48.718	Maylandia_zebra
ENSSDUG00000008682	-	93	56.250	ENSMZEG00005025729	-	83	56.250	Maylandia_zebra
ENSSDUG00000008682	-	72	43.590	ENSMZEG00005005162	-	56	43.590	Maylandia_zebra
ENSSDUG00000008682	-	83	60.000	ENSMZEG00005007426	-	87	60.000	Maylandia_zebra
ENSSDUG00000008682	-	94	62.500	ENSMZEG00005027943	-	96	62.500	Maylandia_zebra
ENSSDUG00000008682	-	72	44.444	ENSMZEG00005022161	-	94	47.170	Maylandia_zebra
ENSSDUG00000008682	-	68	48.780	ENSMALG00000008638	-	57	48.780	Monopterus_albus
ENSSDUG00000008682	-	95	52.542	ENSMALG00000018074	-	55	52.542	Monopterus_albus
ENSSDUG00000008682	-	99	57.500	ENSNBRG00000000577	-	94	58.750	Neolamprologus_brichardi
ENSSDUG00000008682	-	74	47.059	ENSONIG00000006585	-	82	47.436	Oreochromis_niloticus
ENSSDUG00000008682	-	95	45.000	ENSONIG00000003363	-	100	45.000	Oreochromis_niloticus
ENSSDUG00000008682	-	74	46.250	ENSONIG00000013908	-	99	46.250	Oreochromis_niloticus
ENSSDUG00000008682	-	61	47.561	ENSORLG00020019341	-	79	61.111	Oryzias_latipes_hni
ENSSDUG00000008682	-	86	56.250	ENSPKIG00000019848	-	50	56.250	Paramormyrops_kingsleyae
ENSSDUG00000008682	-	74	43.860	ENSPMGG00000001558	znf1174	53	43.860	Periophthalmus_magnuspinnatus
ENSSDUG00000008682	-	71	47.887	ENSPFOG00000011766	-	100	47.887	Poecilia_formosa
ENSSDUG00000008682	-	74	50.633	ENSPFOG00000001144	-	100	50.633	Poecilia_formosa
ENSSDUG00000008682	-	98	55.000	ENSPLAG00000016561	zgc:113348	89	55.000	Poecilia_latipinna
ENSSDUG00000008682	-	77	47.778	ENSPMEG00000007573	zgc:113343	63	48.052	Poecilia_mexicana
ENSSDUG00000008682	-	74	41.489	ENSPREG00000014105	-	79	42.222	Poecilia_reticulata
ENSSDUG00000008682	-	77	47.778	ENSPREG00000001514	zgc:113343	63	48.052	Poecilia_reticulata
ENSSDUG00000008682	-	68	52.564	ENSPREG00000005538	-	61	52.564	Poecilia_reticulata
ENSSDUG00000008682	-	74	45.679	ENSPNYG00000024183	zgc:173577	81	45.679	Pundamilia_nyererei
ENSSDUG00000008682	-	68	48.780	ENSSPAG00000013109	si:ch211-241b2.1	65	48.780	Stegastes_partitus
ENSSDUG00000008682	-	84	47.500	ENSSPAG00000006539	-	88	47.500	Stegastes_partitus
ENSSDUG00000008682	-	74	51.515	ENSTNIG00000000277	-	94	51.515	Tetraodon_nigroviridis
ENSSDUG00000008682	-	77	47.368	ENSXCOG00000017871	zgc:113343	66	49.351	Xiphophorus_couchianus
ENSSDUG00000008682	-	77	47.778	ENSXMAG00000019923	zgc:113343	64	49.351	Xiphophorus_maculatus