EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000008773 (Gene tree)
Gene ID: -
Gene Symbol: zgc:171482
Alias: -
Full Name: zgc:171482
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 11640 bases
Position: chrBDQW01000478.1:369459-381098
Accession: ZDB-GENE-080204-84
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000012058	zf-met	PF12874.7	7.5e-15	1	2
ENSSDUP00000012058	zf-met	PF12874.7	7.5e-15	2	2
ENSSDUP00000012058	zf-C2H2_jaz	PF12171.8	2.8e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000012276	-	429	-	ENSSDUP00000012058	142 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000008773's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000008773's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000008773	zgc:171482	84	70.940	ENSSDUG00000005878	zmat4a	63	70.940

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000008773	zgc:171482	90	95.312	ENSAPOG00000019970	zgc:171482	79	95.312	Acanthochromis_polyacanthus
ENSSDUG00000008773	zgc:171482	85	98.333	ENSACIG00000021512	zgc:171482	90	98.333	Amphilophus_citrinellus
ENSSDUG00000008773	zgc:171482	91	93.798	ENSAOCG00000000751	zgc:171482	95	93.798	Amphiprion_ocellaris
ENSSDUG00000008773	zgc:171482	89	95.276	ENSAPEG00000014154	zgc:171482	91	95.276	Amphiprion_percula
ENSSDUG00000008773	zgc:171482	81	98.261	ENSATEG00000001371	zgc:171482	79	89.630	Anabas_testudineus
ENSSDUG00000008773	zgc:171482	89	94.488	ENSACLG00000010511	zgc:171482	88	94.488	Astatotilapia_calliptera
ENSSDUG00000008773	zgc:171482	85	90.244	ENSAMXG00000002299	zgc:171482	93	90.244	Astyanax_mexicanus
ENSSDUG00000008773	zgc:171482	85	95.000	ENSCSEG00000006509	zgc:171482	78	95.000	Cynoglossus_semilaevis
ENSSDUG00000008773	zgc:171482	85	97.521	ENSCVAG00000013606	zgc:171482	80	97.521	Cyprinodon_variegatus
ENSSDUG00000008773	zgc:171482	93	85.606	ENSDARG00000074415	zgc:171482	91	89.344	Danio_rerio
ENSSDUG00000008773	zgc:171482	95	87.407	ENSELUG00000021817	zgc:171482	97	87.407	Esox_lucius
ENSSDUG00000008773	zgc:171482	88	68.254	ENSELUG00000017517	-	60	85.393	Esox_lucius
ENSSDUG00000008773	zgc:171482	89	96.825	ENSFHEG00000002233	zgc:171482	90	96.825	Fundulus_heteroclitus
ENSSDUG00000008773	zgc:171482	88	94.400	ENSGMOG00000010508	zgc:171482	79	94.400	Gadus_morhua
ENSSDUG00000008773	zgc:171482	85	99.167	ENSGAFG00000009398	zgc:171482	78	99.167	Gambusia_affinis
ENSSDUG00000008773	zgc:171482	96	90.511	ENSGACG00000007680	zgc:171482	80	90.511	Gasterosteus_aculeatus
ENSSDUG00000008773	zgc:171482	89	94.488	ENSHBUG00000023289	zgc:171482	95	94.488	Haplochromis_burtoni
ENSSDUG00000008773	zgc:171482	91	88.550	ENSHCOG00000018086	zgc:171482	98	88.550	Hippocampus_comes
ENSSDUG00000008773	zgc:171482	82	94.872	ENSIPUG00000000361	zgc:171482	85	94.872	Ictalurus_punctatus
ENSSDUG00000008773	zgc:171482	88	96.800	ENSKMAG00000005077	zgc:171482	68	96.800	Kryptolebias_marmoratus
ENSSDUG00000008773	zgc:171482	97	90.714	ENSLBEG00000023823	zgc:171482	100	90.714	Labrus_bergylta
ENSSDUG00000008773	zgc:171482	85	90.909	ENSLOCG00000008863	zgc:171482	77	90.909	Lepisosteus_oculatus
ENSSDUG00000008773	zgc:171482	92	95.385	ENSMAMG00000001031	zgc:171482	82	95.385	Mastacembelus_armatus
ENSSDUG00000008773	zgc:171482	85	90.833	ENSMZEG00005027721	zgc:171482	79	90.833	Maylandia_zebra
ENSSDUG00000008773	zgc:171482	89	97.638	ENSMMOG00000010523	zgc:171482	97	97.638	Mola_mola
ENSSDUG00000008773	zgc:171482	87	96.748	ENSMALG00000017883	zgc:171482	80	96.748	Monopterus_albus
ENSSDUG00000008773	zgc:171482	85	95.041	ENSNBRG00000021035	zgc:171482	90	95.041	Neolamprologus_brichardi
ENSSDUG00000008773	zgc:171482	89	96.032	ENSONIG00000018365	zgc:171482	78	96.032	Oreochromis_niloticus
ENSSDUG00000008773	zgc:171482	91	91.473	ENSORLG00000007607	zgc:171482	95	91.111	Oryzias_latipes
ENSSDUG00000008773	zgc:171482	81	99.130	ENSORLG00020003563	zgc:171482	95	90.370	Oryzias_latipes_hni
ENSSDUG00000008773	zgc:171482	91	91.473	ENSORLG00015008552	zgc:171482	95	91.111	Oryzias_latipes_hsok
ENSSDUG00000008773	zgc:171482	95	91.111	ENSOMEG00000003526	zgc:171482	95	91.111	Oryzias_melastigma
ENSSDUG00000008773	zgc:171482	86	91.935	ENSPKIG00000015911	-	86	91.935	Paramormyrops_kingsleyae
ENSSDUG00000008773	zgc:171482	77	90.909	ENSPKIG00000016244	zgc:171482	82	88.696	Paramormyrops_kingsleyae
ENSSDUG00000008773	zgc:171482	89	94.444	ENSPMGG00000020230	zgc:171482	82	94.444	Periophthalmus_magnuspinnatus
ENSSDUG00000008773	zgc:171482	88	98.400	ENSPFOG00000001974	zgc:171482	78	98.400	Poecilia_formosa
ENSSDUG00000008773	zgc:171482	89	97.638	ENSPLAG00000003327	zgc:171482	79	97.638	Poecilia_latipinna
ENSSDUG00000008773	zgc:171482	89	97.638	ENSPMEG00000004988	zgc:171482	77	97.638	Poecilia_mexicana
ENSSDUG00000008773	zgc:171482	89	97.619	ENSPREG00000019241	zgc:171482	91	97.619	Poecilia_reticulata
ENSSDUG00000008773	zgc:171482	89	94.488	ENSPNYG00000007773	zgc:171482	88	94.488	Pundamilia_nyererei
ENSSDUG00000008773	zgc:171482	81	93.913	ENSPNAG00000007619	zgc:171482	79	87.023	Pygocentrus_nattereri
ENSSDUG00000008773	zgc:171482	97	81.159	ENSSFOG00015021238	zgc:171482	91	81.159	Scleropages_formosus
ENSSDUG00000008773	zgc:171482	82	88.889	ENSSFOG00015016149	zgc:171482	94	88.889	Scleropages_formosus
ENSSDUG00000008773	zgc:171482	96	90.441	ENSSMAG00000002715	zgc:171482	87	90.441	Scophthalmus_maximus
ENSSDUG00000008773	zgc:171482	100	99.296	ENSSLDG00000019510	zgc:171482	100	99.296	Seriola_lalandi_dorsalis
ENSSDUG00000008773	zgc:171482	87	99.194	ENSSPAG00000013724	zgc:171482	98	99.194	Stegastes_partitus
ENSSDUG00000008773	zgc:171482	90	90.625	ENSTRUG00000005705	zgc:171482	76	90.625	Takifugu_rubripes
ENSSDUG00000008773	zgc:171482	89	73.016	ENSTNIG00000008679	zgc:171482	80	73.016	Tetraodon_nigroviridis
ENSSDUG00000008773	zgc:171482	80	76.786	ENSXETG00000013525	zmat4	87	76.786	Xenopus_tropicalis
ENSSDUG00000008773	zgc:171482	85	88.430	ENSXMAG00000002641	zgc:171482	78	88.430	Xiphophorus_maculatus