EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000008852 (Gene tree)
Gene ID: 111236843
Gene Symbol: -
Alias: wu:fa56c07|wu:fi27f11|zgc:66238
Full Name: probable global transcription activator SNF2L2
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 55424 bases
Position: chrBDQW01000733.1:107470-162893
Accession: 111236843
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000012333	BRK	PF07533.16	4.7e-17	1	1
ENSSDUP00000012264	BRK	PF07533.16	4.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000012555	-	4686	-	ENSSDUP00000012333	1561 (aa)	-	-
ENSSDUT00000012485	-	7909	XM_022765713	ENSSDUP00000012264	1629 (aa)	XP_022621434	UPI000BBF2E5B

Gene Model

Click here to download ENSSDUG00000008852's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000008852's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000008852	-	94	67.713	ENSSDUG00000017298	smarca4a	99	67.315
ENSSDUG00000008852	-	95	71.103	ENSSDUG00000005388	-	97	75.883

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000008852	-	96	80.844	ENSG00000080503	SMARCA2	99	98.000	Homo_sapiens
ENSSDUG00000008852	-	100	92.388	ENSAPOG00000002641	SMARCA2	100	93.367	Acanthochromis_polyacanthus
ENSSDUG00000008852	-	89	75.638	ENSAMEG00000012325	SMARCA2	99	85.614	Ailuropoda_melanoleuca
ENSSDUG00000008852	-	98	91.148	ENSACIG00000015607	SMARCA2	99	91.276	Amphilophus_citrinellus
ENSSDUG00000008852	-	100	92.327	ENSAOCG00000009647	-	100	92.081	Amphiprion_ocellaris
ENSSDUG00000008852	-	100	91.958	ENSAPEG00000007646	SMARCA2	100	92.020	Amphiprion_percula
ENSSDUG00000008852	-	99	93.275	ENSATEG00000006916	SMARCA2	98	93.026	Anabas_testudineus
ENSSDUG00000008852	-	86	78.396	ENSAPLG00000013873	SMARCA2	93	77.336	Anas_platyrhynchos
ENSSDUG00000008852	-	98	78.661	ENSACAG00000002423	SMARCA2	99	79.463	Anolis_carolinensis
ENSSDUG00000008852	-	96	80.937	ENSANAG00000026498	SMARCA2	99	80.651	Aotus_nancymaae
ENSSDUG00000008852	-	98	90.639	ENSACLG00000004248	SMARCA2	99	90.768	Astatotilapia_calliptera
ENSSDUG00000008852	-	100	84.335	ENSAMXG00000012404	smarca2	100	83.677	Astyanax_mexicanus
ENSSDUG00000008852	-	98	79.198	ENSBTAG00000007494	SMARCA2	99	80.720	Bos_taurus
ENSSDUG00000008852	-	96	81.323	ENSCJAG00000010710	SMARCA2	99	80.859	Callithrix_jacchus
ENSSDUG00000008852	-	98	78.947	ENSCAFG00000002013	SMARCA2	99	80.848	Canis_familiaris
ENSSDUG00000008852	-	73	88.210	ENSCAFG00020026802	SMARCA2	94	87.424	Canis_lupus_dingo
ENSSDUG00000008852	-	100	78.667	ENSCHIG00000025863	SMARCA2	99	80.784	Capra_hircus
ENSSDUG00000008852	-	96	80.205	ENSTSYG00000003858	SMARCA2	99	80.967	Carlito_syrichta
ENSSDUG00000008852	-	96	80.302	ENSCAPG00000002890	SMARCA2	99	79.948	Cavia_aperea
ENSSDUG00000008852	-	97	79.974	ENSCPOG00000005475	SMARCA2	99	80.536	Cavia_porcellus
ENSSDUG00000008852	-	96	81.144	ENSCCAG00000030636	SMARCA2	99	81.047	Cebus_capucinus
ENSSDUG00000008852	-	96	79.987	ENSCATG00000031470	SMARCA2	99	80.524	Cercocebus_atys
ENSSDUG00000008852	-	97	79.704	ENSCLAG00000014484	SMARCA2	99	80.598	Chinchilla_lanigera
ENSSDUG00000008852	-	92	81.058	ENSCSAG00000008650	SMARCA2	99	81.279	Chlorocebus_sabaeus
ENSSDUG00000008852	-	84	82.353	ENSCHOG00000004316	SMARCA2	86	81.841	Choloepus_hoffmanni
ENSSDUG00000008852	-	98	79.300	ENSCPBG00000025463	SMARCA2	100	83.517	Chrysemys_picta_bellii
ENSSDUG00000008852	-	96	81.107	ENSCANG00000039597	SMARCA2	99	80.946	Colobus_angolensis_palliatus
ENSSDUG00000008852	-	96	75.896	ENSCGRG00001002323	Smarca2	99	74.589	Cricetulus_griseus_chok1gshd
ENSSDUG00000008852	-	99	89.551	ENSCSEG00000019311	SMARCA2	99	89.423	Cynoglossus_semilaevis
ENSSDUG00000008852	-	84	89.367	ENSCVAG00000016571	SMARCA2	98	88.914	Cyprinodon_variegatus
ENSSDUG00000008852	-	100	83.181	ENSDARG00000008904	smarca2	100	82.511	Danio_rerio
ENSSDUG00000008852	-	98	79.135	ENSDNOG00000006402	SMARCA2	99	80.000	Dasypus_novemcinctus
ENSSDUG00000008852	-	98	79.637	ENSDORG00000014832	Smarca2	99	80.548	Dipodomys_ordii
ENSSDUG00000008852	-	76	61.916	FBgn0000212	brm	78	59.322	Drosophila_melanogaster
ENSSDUG00000008852	-	83	61.828	ENSEBUG00000002449	-	93	63.241	Eptatretus_burgeri
ENSSDUG00000008852	-	94	70.410	ENSEBUG00000011442	-	97	69.513	Eptatretus_burgeri
ENSSDUG00000008852	-	98	78.849	ENSEASG00005010312	SMARCA2	99	80.656	Equus_asinus_asinus
ENSSDUG00000008852	-	60	94.118	ENSEEUG00000015540	-	69	73.515	Erinaceus_europaeus
ENSSDUG00000008852	-	94	84.360	ENSELUG00000010318	smarca2	96	84.584	Esox_lucius
ENSSDUG00000008852	-	98	78.697	ENSFCAG00000001568	SMARCA2	99	80.720	Felis_catus
ENSSDUG00000008852	-	98	78.737	ENSFALG00000010416	SMARCA2	100	80.052	Ficedula_albicollis
ENSSDUG00000008852	-	97	80.189	ENSFDAG00000010502	SMARCA2	100	79.177	Fukomys_damarensis
ENSSDUG00000008852	-	100	91.043	ENSFHEG00000021250	SMARCA2	100	91.104	Fundulus_heteroclitus
ENSSDUG00000008852	-	98	83.173	ENSGMOG00000014229	SMARCA2	99	86.409	Gadus_morhua
ENSSDUG00000008852	-	98	78.924	ENSGALG00000010164	SMARCA2	100	78.707	Gallus_gallus
ENSSDUG00000008852	-	94	85.165	ENSGAFG00000001164	SMARCA2	93	97.000	Gambusia_affinis
ENSSDUG00000008852	-	99	87.948	ENSGACG00000014488	SMARCA2	99	87.515	Gasterosteus_aculeatus
ENSSDUG00000008852	-	98	79.112	ENSGAGG00000024412	SMARCA2	100	78.768	Gopherus_agassizii
ENSSDUG00000008852	-	87	86.776	ENSGGOG00000000513	SMARCA2	100	78.846	Gorilla_gorilla
ENSSDUG00000008852	-	100	90.976	ENSHBUG00000006691	SMARCA2	100	91.160	Haplochromis_burtoni
ENSSDUG00000008852	-	97	80.505	ENSHGLG00000005215	SMARCA2	99	79.875	Heterocephalus_glaber_female
ENSSDUG00000008852	-	96	80.628	ENSHGLG00100010496	SMARCA2	98	85.802	Heterocephalus_glaber_male
ENSSDUG00000008852	-	89	83.417	ENSHCOG00000015348	-	95	89.714	Hippocampus_comes
ENSSDUG00000008852	-	99	83.313	ENSIPUG00000011060	smarca2	99	82.592	Ictalurus_punctatus
ENSSDUG00000008852	-	98	80.451	ENSSTOG00000006812	SMARCA2	100	80.318	Ictidomys_tridecemlineatus
ENSSDUG00000008852	-	98	79.662	ENSJJAG00000010867	Smarca2	99	80.485	Jaculus_jaculus
ENSSDUG00000008852	-	100	91.723	ENSKMAG00000015844	-	100	91.723	Kryptolebias_marmoratus
ENSSDUG00000008852	-	98	81.707	ENSLOCG00000011499	smarca2	99	81.436	Lepisosteus_oculatus
ENSSDUG00000008852	-	98	78.536	ENSLAFG00000014061	SMARCA2	99	79.114	Loxodonta_africana
ENSSDUG00000008852	-	98	78.129	ENSMFAG00000003814	SMARCA2	99	80.410	Macaca_fascicularis
ENSSDUG00000008852	-	96	80.990	ENSMMUG00000015279	SMARCA2	99	80.831	Macaca_mulatta
ENSSDUG00000008852	-	96	80.483	ENSMNEG00000041069	SMARCA2	99	80.818	Macaca_nemestrina
ENSSDUG00000008852	-	89	86.577	ENSMLEG00000027418	SMARCA2	96	86.815	Mandrillus_leucophaeus
ENSSDUG00000008852	-	100	94.291	ENSMAMG00000003056	SMARCA2	100	94.107	Mastacembelus_armatus
ENSSDUG00000008852	-	100	91.037	ENSMZEG00005020709	SMARCA2	100	91.222	Maylandia_zebra
ENSSDUG00000008852	-	75	68.692	ENSMGAG00000005160	-	100	67.900	Meleagris_gallopavo
ENSSDUG00000008852	-	96	81.319	ENSMICG00000005162	SMARCA2	99	81.206	Microcebus_murinus
ENSSDUG00000008852	-	98	80.263	ENSMOCG00000001611	Smarca2	99	80.740	Microtus_ochrogaster
ENSSDUG00000008852	-	99	90.577	ENSMMOG00000014196	SMARCA2	100	90.385	Mola_mola
ENSSDUG00000008852	-	96	78.974	ENSMODG00000003578	SMARCA2	100	78.877	Monodelphis_domestica
ENSSDUG00000008852	-	99	92.640	ENSMALG00000009611	SMARCA2	99	92.059	Monopterus_albus
ENSSDUG00000008852	-	95	80.687	MGP_CAROLIEiJ_G0022841	Smarca2	99	79.596	Mus_caroli
ENSSDUG00000008852	-	98	80.764	ENSMUSG00000024921	Smarca2	99	98.000	Mus_musculus
ENSSDUG00000008852	-	98	80.639	MGP_PahariEiJ_G0014334	Smarca2	99	79.975	Mus_pahari
ENSSDUG00000008852	-	95	80.557	MGP_SPRETEiJ_G0023759	Smarca2	95	90.909	Mus_spretus
ENSSDUG00000008852	-	77	85.803	ENSMPUG00000005171	SMARCA2	94	85.647	Mustela_putorius_furo
ENSSDUG00000008852	-	97	75.359	ENSMLUG00000002342	SMARCA2	99	74.876	Myotis_lucifugus
ENSSDUG00000008852	-	96	80.154	ENSNGAG00000000108	Smarca2	99	80.150	Nannospalax_galili
ENSSDUG00000008852	-	95	76.933	ENSNBRG00000017998	SMARCA2	93	95.556	Neolamprologus_brichardi
ENSSDUG00000008852	-	96	79.830	ENSNLEG00000008575	SMARCA2	96	86.234	Nomascus_leucogenys
ENSSDUG00000008852	-	93	78.788	ENSMEUG00000009812	SMARCA2	99	72.808	Notamacropus_eugenii
ENSSDUG00000008852	-	96	76.212	ENSOPRG00000013474	SMARCA2	100	75.061	Ochotona_princeps
ENSSDUG00000008852	-	97	80.025	ENSODEG00000005452	SMARCA2	98	78.792	Octodon_degus
ENSSDUG00000008852	-	99	91.218	ENSONIG00000014163	SMARCA2	99	91.033	Oreochromis_niloticus
ENSSDUG00000008852	-	96	80.530	ENSOCUG00000006320	SMARCA2	99	80.051	Oryctolagus_cuniculus
ENSSDUG00000008852	-	100	89.810	ENSORLG00000020820	SMARCA2	100	89.932	Oryzias_latipes
ENSSDUG00000008852	-	100	89.626	ENSORLG00015006289	SMARCA2	100	89.748	Oryzias_latipes_hsok
ENSSDUG00000008852	-	100	88.643	ENSOMEG00000009736	-	100	88.336	Oryzias_melastigma
ENSSDUG00000008852	-	79	85.138	ENSOGAG00000017053	SMARCA2	99	78.876	Otolemur_garnettii
ENSSDUG00000008852	-	89	86.052	ENSOARG00000013265	SMARCA2	99	79.770	Ovis_aries
ENSSDUG00000008852	-	88	86.709	ENSPPAG00000038717	SMARCA2	99	84.598	Pan_paniscus
ENSSDUG00000008852	-	98	78.759	ENSPPRG00000001879	SMARCA2	99	80.784	Panthera_pardus
ENSSDUG00000008852	-	98	78.786	ENSPTRG00000051168	SMARCA2	100	78.976	Pan_troglodytes
ENSSDUG00000008852	-	98	75.955	ENSPANG00000025121	SMARCA2	99	77.481	Papio_anubis
ENSSDUG00000008852	-	100	82.752	ENSPKIG00000018469	-	100	81.863	Paramormyrops_kingsleyae
ENSSDUG00000008852	-	96	78.838	ENSPSIG00000006284	SMARCA2	100	78.563	Pelodiscus_sinensis
ENSSDUG00000008852	-	99	82.794	ENSPMGG00000013696	-	99	83.429	Periophthalmus_magnuspinnatus
ENSSDUG00000008852	-	98	79.637	ENSPEMG00000019821	Smarca2	99	79.504	Peromyscus_maniculatus_bairdii
ENSSDUG00000008852	-	95	69.073	ENSPMAG00000005337	-	97	69.436	Petromyzon_marinus
ENSSDUG00000008852	-	98	78.911	ENSPCIG00000015658	SMARCA2	99	80.077	Phascolarctos_cinereus
ENSSDUG00000008852	-	100	90.552	ENSPFOG00000001856	SMARCA2	100	90.552	Poecilia_formosa
ENSSDUG00000008852	-	99	90.728	ENSPLAG00000017829	SMARCA2	98	89.399	Poecilia_latipinna
ENSSDUG00000008852	-	99	90.728	ENSPMEG00000001815	-	99	90.552	Poecilia_mexicana
ENSSDUG00000008852	-	100	90.429	ENSPREG00000013800	SMARCA2	100	90.429	Poecilia_reticulata
ENSSDUG00000008852	-	98	79.699	ENSPPYG00000019258	SMARCA2	99	80.524	Pongo_abelii
ENSSDUG00000008852	-	77	74.648	ENSPCAG00000016969	SMARCA2	78	74.648	Procavia_capensis
ENSSDUG00000008852	-	96	79.817	ENSPCOG00000025709	SMARCA2	99	79.167	Propithecus_coquereli
ENSSDUG00000008852	-	89	82.456	ENSPVAG00000000901	SMARCA2	93	81.978	Pteropus_vampyrus
ENSSDUG00000008852	-	100	88.037	ENSPNYG00000004533	SMARCA2	100	87.669	Pundamilia_nyererei
ENSSDUG00000008852	-	99	84.360	ENSPNAG00000014635	smarca2	98	84.852	Pygocentrus_nattereri
ENSSDUG00000008852	-	96	79.821	ENSRNOG00000011931	Smarca2	99	78.759	Rattus_norvegicus
ENSSDUG00000008852	-	96	80.314	ENSRBIG00000038618	SMARCA2	95	86.385	Rhinopithecus_bieti
ENSSDUG00000008852	-	98	78.133	ENSRROG00000019271	SMARCA2	99	80.764	Rhinopithecus_roxellana
ENSSDUG00000008852	-	89	86.356	ENSSBOG00000034827	SMARCA2	100	83.069	Saimiri_boliviensis_boliviensis
ENSSDUG00000008852	-	96	79.531	ENSSHAG00000007884	SMARCA2	100	79.169	Sarcophilus_harrisii
ENSSDUG00000008852	-	91	83.043	ENSSFOG00015014870	SMARCA2	97	84.561	Scleropages_formosus
ENSSDUG00000008852	-	100	91.870	ENSSMAG00000013707	SMARCA2	100	92.237	Scophthalmus_maximus
ENSSDUG00000008852	-	99	96.811	ENSSLDG00000025449	SMARCA2	100	96.811	Seriola_lalandi_dorsalis
ENSSDUG00000008852	-	89	85.025	ENSSARG00000007888	SMARCA2	82	85.025	Sorex_araneus
ENSSDUG00000008852	-	96	76.148	ENSSPUG00000001629	SMARCA2	98	75.913	Sphenodon_punctatus
ENSSDUG00000008852	-	100	92.388	ENSSPAG00000020091	-	100	92.572	Stegastes_partitus
ENSSDUG00000008852	-	98	79.073	ENSSSCG00000005232	SMARCA2	99	80.591	Sus_scrofa
ENSSDUG00000008852	-	98	78.361	ENSTGUG00000005460	SMARCA2	100	78.768	Taeniopygia_guttata
ENSSDUG00000008852	-	99	88.957	ENSTRUG00000015619	SMARCA2	99	88.925	Takifugu_rubripes
ENSSDUG00000008852	-	61	97.619	ENSTBEG00000008767	SMARCA2	69	97.619	Tupaia_belangeri
ENSSDUG00000008852	-	92	79.678	ENSTTRG00000002033	SMARCA2	95	80.198	Tursiops_truncatus
ENSSDUG00000008852	-	80	87.612	ENSUAMG00000024701	SMARCA2	96	86.744	Ursus_americanus
ENSSDUG00000008852	-	85	78.577	ENSVPAG00000001204	SMARCA2	93	79.404	Vicugna_pacos
ENSSDUG00000008852	-	73	87.958	ENSVVUG00000004598	SMARCA2	96	87.249	Vulpes_vulpes
ENSSDUG00000008852	-	100	76.214	ENSXETG00000015299	smarca2	100	75.136	Xenopus_tropicalis
ENSSDUG00000008852	-	89	89.166	ENSXCOG00000011073	SMARCA2	99	89.828	Xiphophorus_couchianus
ENSSDUG00000008852	-	100	90.675	ENSXMAG00000015611	SMARCA2	100	90.736	Xiphophorus_maculatus