EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000008943 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 7743 bases
Position: chrBDQW01000383.1:614754-622496
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000012777	zf-C2H2	PF00096.26	1.5e-59	1	9
ENSSDUP00000012777	zf-C2H2	PF00096.26	1.5e-59	2	9
ENSSDUP00000012777	zf-C2H2	PF00096.26	1.5e-59	3	9
ENSSDUP00000012777	zf-C2H2	PF00096.26	1.5e-59	4	9
ENSSDUP00000012777	zf-C2H2	PF00096.26	1.5e-59	5	9
ENSSDUP00000012777	zf-C2H2	PF00096.26	1.5e-59	6	9
ENSSDUP00000012777	zf-C2H2	PF00096.26	1.5e-59	7	9
ENSSDUP00000012777	zf-C2H2	PF00096.26	1.5e-59	8	9
ENSSDUP00000012777	zf-C2H2	PF00096.26	1.5e-59	9	9
ENSSDUP00000012541	zf-C2H2	PF00096.26	2.2e-49	1	8
ENSSDUP00000012541	zf-C2H2	PF00096.26	2.2e-49	2	8
ENSSDUP00000012541	zf-C2H2	PF00096.26	2.2e-49	3	8
ENSSDUP00000012541	zf-C2H2	PF00096.26	2.2e-49	4	8
ENSSDUP00000012541	zf-C2H2	PF00096.26	2.2e-49	5	8
ENSSDUP00000012541	zf-C2H2	PF00096.26	2.2e-49	6	8
ENSSDUP00000012541	zf-C2H2	PF00096.26	2.2e-49	7	8
ENSSDUP00000012541	zf-C2H2	PF00096.26	2.2e-49	8	8
ENSSDUP00000012942	zf-C2H2	PF00096.26	2e-46	1	6
ENSSDUP00000012942	zf-C2H2	PF00096.26	2e-46	2	6
ENSSDUP00000012942	zf-C2H2	PF00096.26	2e-46	3	6
ENSSDUP00000012942	zf-C2H2	PF00096.26	2e-46	4	6
ENSSDUP00000012942	zf-C2H2	PF00096.26	2e-46	5	6
ENSSDUP00000012942	zf-C2H2	PF00096.26	2e-46	6	6
ENSSDUP00000012777	zf-met	PF12874.7	6.9e-20	1	3
ENSSDUP00000012777	zf-met	PF12874.7	6.9e-20	2	3
ENSSDUP00000012777	zf-met	PF12874.7	6.9e-20	3	3
ENSSDUP00000012942	zf-met	PF12874.7	6.8e-18	1	2
ENSSDUP00000012942	zf-met	PF12874.7	6.8e-18	2	2
ENSSDUP00000012541	zf-met	PF12874.7	9.2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000013008	-	1272	-	ENSSDUP00000012777	423 (aa)	-	-
ENSSDUT00000012763	-	1185	-	ENSSDUP00000012541	394 (aa)	-	-
ENSSDUT00000013178	-	1197	-	ENSSDUP00000012942	398 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000008943's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000008943's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000008943	-	94	51.572	ENSSDUG00000006808	-	81	52.830
ENSSDUG00000008943	-	84	47.297	ENSSDUG00000001637	scrt2	65	34.532
ENSSDUG00000008943	-	85	48.810	ENSSDUG00000004835	-	69	49.632
ENSSDUG00000008943	-	100	59.062	ENSSDUG00000009534	-	86	58.371
ENSSDUG00000008943	-	86	47.904	ENSSDUG00000022914	-	60	47.904
ENSSDUG00000008943	-	99	60.773	ENSSDUG00000009601	-	99	61.517
ENSSDUG00000008943	-	100	46.667	ENSSDUG00000020774	-	76	46.667
ENSSDUG00000008943	-	93	43.802	ENSSDUG00000004089	-	95	45.098
ENSSDUG00000008943	-	100	56.250	ENSSDUG00000004867	-	96	63.953
ENSSDUG00000008943	-	97	44.586	ENSSDUG00000020397	prdm5	84	44.586
ENSSDUG00000008943	-	89	41.840	ENSSDUG00000019932	ZNF319	96	39.583
ENSSDUG00000008943	-	84	42.466	ENSSDUG00000019933	snai1a	63	43.119
ENSSDUG00000008943	-	94	44.375	ENSSDUG00000011654	gfi1aa	53	43.860
ENSSDUG00000008943	-	100	58.527	ENSSDUG00000009563	-	95	59.052
ENSSDUG00000008943	-	86	32.423	ENSSDUG00000001918	znf366	50	35.955
ENSSDUG00000008943	-	94	50.238	ENSSDUG00000015159	-	95	50.671
ENSSDUG00000008943	-	85	47.674	ENSSDUG00000006740	-	82	45.736
ENSSDUG00000008943	-	98	56.818	ENSSDUG00000000748	sall1b	50	56.818
ENSSDUG00000008943	-	99	68.276	ENSSDUG00000008682	-	97	68.276
ENSSDUG00000008943	-	89	30.332	ENSSDUG00000018835	PRDM15	50	32.194
ENSSDUG00000008943	-	86	43.678	ENSSDUG00000018060	snai2	60	43.678
ENSSDUG00000008943	-	83	43.836	ENSSDUG00000017250	-	52	43.836
ENSSDUG00000008943	-	85	38.261	ENSSDUG00000000871	-	95	45.283
ENSSDUG00000008943	-	86	43.077	ENSSDUG00000002488	-	60	47.500
ENSSDUG00000008943	-	91	41.791	ENSSDUG00000004892	-	95	38.158
ENSSDUG00000008943	-	89	44.186	ENSSDUG00000002675	znf646	86	44.186
ENSSDUG00000008943	-	89	42.712	ENSSDUG00000022412	znf648	63	41.304
ENSSDUG00000008943	-	99	50.394	ENSSDUG00000022162	-	78	50.394
ENSSDUG00000008943	-	98	38.360	ENSSDUG00000016734	-	75	42.578
ENSSDUG00000008943	-	99	54.717	ENSSDUG00000006507	sall1a	50	36.364
ENSSDUG00000008943	-	90	40.741	ENSSDUG00000021415	si:ch211-216l23.1	98	40.741
ENSSDUG00000008943	-	82	34.483	ENSSDUG00000014540	znf341	51	30.435
ENSSDUG00000008943	-	100	36.000	ENSSDUG00000004449	zbtb48	56	40.693
ENSSDUG00000008943	-	85	45.968	ENSSDUG00000011604	gfi1b	56	47.183
ENSSDUG00000008943	-	92	32.843	ENSSDUG00000010305	-	69	31.906
ENSSDUG00000008943	-	91	45.562	ENSSDUG00000000799	-	74	46.914
ENSSDUG00000008943	-	92	42.562	ENSSDUG00000016450	-	73	42.562
ENSSDUG00000008943	-	85	42.105	ENSSDUG00000004388	wt1a	52	45.833
ENSSDUG00000008943	-	89	61.957	ENSSDUG00000004650	-	99	61.074
ENSSDUG00000008943	-	98	57.368	ENSSDUG00000015622	-	100	54.857
ENSSDUG00000008943	-	90	42.857	ENSSDUG00000000695	-	76	42.857
ENSSDUG00000008943	-	85	45.000	ENSSDUG00000022410	gfi1ab	50	44.737
ENSSDUG00000008943	-	98	46.154	ENSSDUG00000011170	znf236	63	46.154
ENSSDUG00000008943	-	89	39.003	ENSSDUG00000003003	znf319b	87	39.003
ENSSDUG00000008943	-	90	46.316	ENSSDUG00000006463	-	88	46.316
ENSSDUG00000008943	-	98	52.261	ENSSDUG00000019911	-	73	52.261
ENSSDUG00000008943	-	95	50.847	ENSSDUG00000000838	-	75	50.476
ENSSDUG00000008943	-	83	43.011	ENSSDUG00000000705	-	69	41.667
ENSSDUG00000008943	-	89	37.349	ENSSDUG00000013048	-	66	37.358
ENSSDUG00000008943	-	99	58.118	ENSSDUG00000007336	-	97	59.801
ENSSDUG00000008943	-	98	64.444	ENSSDUG00000009439	-	98	62.676
ENSSDUG00000008943	-	85	52.941	ENSSDUG00000002195	-	99	52.941
ENSSDUG00000008943	-	99	59.664	ENSSDUG00000009577	-	80	59.664
ENSSDUG00000008943	-	89	42.529	ENSSDUG00000000889	-	75	42.529
ENSSDUG00000008943	-	98	38.889	ENSSDUG00000008329	-	80	50.877
ENSSDUG00000008943	-	88	51.462	ENSSDUG00000020805	-	93	52.500
ENSSDUG00000008943	-	84	42.353	ENSSDUG00000007752	scrt1b	71	38.053
ENSSDUG00000008943	-	99	56.031	ENSSDUG00000015182	-	83	56.341
ENSSDUG00000008943	-	100	47.768	ENSSDUG00000020788	-	93	47.768
ENSSDUG00000008943	-	100	43.578	ENSSDUG00000020783	-	69	43.878
ENSSDUG00000008943	-	99	56.727	ENSSDUG00000015191	-	98	58.382
ENSSDUG00000008943	-	93	40.860	ENSSDUG00000014574	znf526	65	35.772
ENSSDUG00000008943	-	99	49.558	ENSSDUG00000000786	-	99	49.306
ENSSDUG00000008943	-	97	46.947	ENSSDUG00000015013	-	72	46.947
ENSSDUG00000008943	-	99	58.140	ENSSDUG00000015254	-	98	57.143
ENSSDUG00000008943	-	79	36.522	ENSSDUG00000015931	si:dkey-89b17.4	61	36.522
ENSSDUG00000008943	-	96	42.029	ENSSDUG00000012926	-	91	45.652
ENSSDUG00000008943	-	100	58.784	ENSSDUG00000005401	-	99	60.071
ENSSDUG00000008943	-	89	45.122	ENSSDUG00000002174	-	69	45.122
ENSSDUG00000008943	-	99	52.151	ENSSDUG00000011244	-	95	52.151
ENSSDUG00000008943	-	100	49.000	ENSSDUG00000000946	-	99	49.708
ENSSDUG00000008943	-	94	65.038	ENSSDUG00000009421	-	100	65.038
ENSSDUG00000008943	-	100	59.483	ENSSDUG00000009425	-	76	59.483
ENSSDUG00000008943	-	98	43.478	ENSSDUG00000020595	-	94	43.411
ENSSDUG00000008943	-	99	57.197	ENSSDUG00000006426	-	99	56.522
ENSSDUG00000008943	-	88	59.717	ENSSDUG00000015204	-	97	59.328
ENSSDUG00000008943	-	98	47.458	ENSSDUG00000013904	-	74	47.458
ENSSDUG00000008943	-	86	54.297	ENSSDUG00000005323	-	97	54.297
ENSSDUG00000008943	-	88	48.548	ENSSDUG00000023764	-	96	49.490
ENSSDUG00000008943	-	87	51.064	ENSSDUG00000023765	-	83	50.000
ENSSDUG00000008943	-	100	46.286	ENSSDUG00000022170	zbtb49	60	46.286
ENSSDUG00000008943	-	99	49.708	ENSSDUG00000022035	-	77	49.708
ENSSDUG00000008943	-	100	57.432	ENSSDUG00000009553	-	79	57.432
ENSSDUG00000008943	-	86	55.978	ENSSDUG00000001263	-	96	54.913
ENSSDUG00000008943	-	100	46.567	ENSSDUG00000020810	-	95	46.386

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000008943	-	97	42.857	ENSAPOG00000019960	-	95	38.889	Acanthochromis_polyacanthus
ENSSDUG00000008943	-	100	57.785	ENSAPOG00000006303	-	97	58.865	Acanthochromis_polyacanthus
ENSSDUG00000008943	-	100	52.674	ENSAPOG00000008802	-	99	59.751	Acanthochromis_polyacanthus
ENSSDUG00000008943	-	99	55.882	ENSACIG00000022658	-	95	57.529	Amphilophus_citrinellus
ENSSDUG00000008943	-	100	59.606	ENSACIG00000004745	-	95	59.770	Amphilophus_citrinellus
ENSSDUG00000008943	-	100	54.106	ENSAOCG00000014165	-	94	55.911	Amphiprion_ocellaris
ENSSDUG00000008943	-	99	58.112	ENSAOCG00000013710	-	97	58.472	Amphiprion_ocellaris
ENSSDUG00000008943	-	100	57.785	ENSAOCG00000013130	-	92	57.785	Amphiprion_ocellaris
ENSSDUG00000008943	-	99	61.856	ENSAPEG00000006650	-	98	59.191	Amphiprion_percula
ENSSDUG00000008943	-	100	59.149	ENSAPEG00000009383	-	87	59.162	Amphiprion_percula
ENSSDUG00000008943	-	91	54.762	ENSATEG00000017618	-	98	54.762	Anabas_testudineus
ENSSDUG00000008943	-	91	54.762	ENSATEG00000015695	-	98	54.762	Anabas_testudineus
ENSSDUG00000008943	-	100	55.882	ENSACLG00000018746	-	98	53.350	Astatotilapia_calliptera
ENSSDUG00000008943	-	86	44.073	ENSACLG00000019291	-	92	43.770	Astatotilapia_calliptera
ENSSDUG00000008943	-	99	61.504	ENSACLG00000023513	-	98	61.290	Astatotilapia_calliptera
ENSSDUG00000008943	-	100	54.639	ENSACLG00000026703	-	85	54.639	Astatotilapia_calliptera
ENSSDUG00000008943	-	99	58.333	ENSACLG00000021343	-	95	58.333	Astatotilapia_calliptera
ENSSDUG00000008943	-	89	50.400	ENSAMXG00000043302	-	72	50.400	Astyanax_mexicanus
ENSSDUG00000008943	-	84	54.027	ENSAMXG00000041975	-	81	54.485	Astyanax_mexicanus
ENSSDUG00000008943	-	92	50.824	ENSAMXG00000042275	-	99	49.235	Astyanax_mexicanus
ENSSDUG00000008943	-	85	55.093	ENSAMXG00000035920	-	92	55.093	Astyanax_mexicanus
ENSSDUG00000008943	-	89	52.381	ENSAMXG00000039408	-	94	51.613	Astyanax_mexicanus
ENSSDUG00000008943	-	89	51.562	ENSBTAG00000016191	ZNF32	78	51.562	Bos_taurus
ENSSDUG00000008943	-	90	51.479	ENSCHIG00000021099	ZNF32	78	51.562	Capra_hircus
ENSSDUG00000008943	-	82	55.556	ENSCSAVG00000001808	-	100	55.556	Ciona_savignyi
ENSSDUG00000008943	-	99	50.224	ENSCVAG00000021225	-	97	68.571	Cyprinodon_variegatus
ENSSDUG00000008943	-	89	46.809	ENSDARG00000099986	si:ch211-207i20.2	64	46.721	Danio_rerio
ENSSDUG00000008943	-	89	51.042	ENSDNOG00000035046	ZNF32	93	51.724	Dasypus_novemcinctus
ENSSDUG00000008943	-	90	51.479	ENSEASG00005006910	ZNF32	85	51.479	Equus_asinus_asinus
ENSSDUG00000008943	-	90	51.479	ENSECAG00000023676	ZNF32	85	51.479	Equus_caballus
ENSSDUG00000008943	-	89	39.862	ENSELUG00000021229	-	90	39.842	Esox_lucius
ENSSDUG00000008943	-	90	50.000	ENSFHEG00000000678	-	99	49.345	Fundulus_heteroclitus
ENSSDUG00000008943	-	98	52.083	ENSFHEG00000018063	-	91	50.699	Fundulus_heteroclitus
ENSSDUG00000008943	-	96	54.459	ENSGAFG00000020499	-	71	54.459	Gambusia_affinis
ENSSDUG00000008943	-	88	46.071	ENSGACG00000010352	si:ch211-207i20.2	65	46.071	Gasterosteus_aculeatus
ENSSDUG00000008943	-	85	39.241	ENSHBUG00000013296	-	96	39.301	Haplochromis_burtoni
ENSSDUG00000008943	-	94	51.667	ENSHBUG00000015166	-	99	52.970	Haplochromis_burtoni
ENSSDUG00000008943	-	85	61.881	ENSHBUG00000021003	-	97	61.881	Haplochromis_burtoni
ENSSDUG00000008943	-	82	64.706	ENSIPUG00000002655	-	98	64.706	Ictalurus_punctatus
ENSSDUG00000008943	-	85	54.751	ENSIPUG00000021998	-	96	52.542	Ictalurus_punctatus
ENSSDUG00000008943	-	87	49.609	ENSIPUG00000005733	-	78	49.609	Ictalurus_punctatus
ENSSDUG00000008943	-	93	51.471	ENSIPUG00000022741	-	95	51.471	Ictalurus_punctatus
ENSSDUG00000008943	-	90	51.456	ENSIPUG00000023761	-	61	51.456	Ictalurus_punctatus
ENSSDUG00000008943	-	86	52.294	ENSLBEG00000020128	-	99	50.000	Labrus_bergylta
ENSSDUG00000008943	-	100	69.118	ENSMAMG00000014734	-	77	69.118	Mastacembelus_armatus
ENSSDUG00000008943	-	100	55.645	ENSMZEG00005007262	-	99	53.982	Maylandia_zebra
ENSSDUG00000008943	-	100	55.882	ENSMZEG00005003336	-	98	53.350	Maylandia_zebra
ENSSDUG00000008943	-	100	50.739	ENSMZEG00005021052	-	92	54.799	Maylandia_zebra
ENSSDUG00000008943	-	87	54.502	ENSMZEG00005026082	-	78	54.502	Maylandia_zebra
ENSSDUG00000008943	-	91	40.800	ENSMZEG00005012715	-	76	41.597	Maylandia_zebra
ENSSDUG00000008943	-	98	37.386	ENSMZEG00005020156	-	93	37.386	Maylandia_zebra
ENSSDUG00000008943	-	98	54.054	ENSMZEG00005025343	-	99	54.839	Maylandia_zebra
ENSSDUG00000008943	-	89	38.462	ENSMZEG00005014592	-	92	40.268	Maylandia_zebra
ENSSDUG00000008943	-	91	42.718	ENSMZEG00005020162	-	78	42.718	Maylandia_zebra
ENSSDUG00000008943	-	100	60.811	ENSMZEG00005019918	-	93	72.881	Maylandia_zebra
ENSSDUG00000008943	-	98	58.416	ENSMMOG00000010703	-	98	58.416	Mola_mola
ENSSDUG00000008943	-	92	50.000	ENSMMOG00000006131	-	91	50.000	Mola_mola
ENSSDUG00000008943	-	99	54.945	ENSMMOG00000004460	-	95	53.942	Mola_mola
ENSSDUG00000008943	-	99	54.425	ENSMALG00000004216	-	91	59.028	Monopterus_albus
ENSSDUG00000008943	-	99	64.000	ENSMALG00000007051	-	95	65.116	Monopterus_albus
ENSSDUG00000008943	-	98	54.331	ENSMALG00000015655	-	99	52.313	Monopterus_albus
ENSSDUG00000008943	-	89	54.310	MGP_PahariEiJ_G0022533	Zfp637	92	55.357	Mus_pahari
ENSSDUG00000008943	-	89	54.310	MGP_SPRETEiJ_G0029809	Zfp637	92	55.357	Mus_spretus
ENSSDUG00000008943	-	90	52.632	ENSNGAG00000020281	Zfp637	78	52.632	Nannospalax_galili
ENSSDUG00000008943	-	98	54.082	ENSNBRG00000000523	-	95	54.154	Neolamprologus_brichardi
ENSSDUG00000008943	-	90	43.850	ENSNBRG00000005796	-	99	44.574	Neolamprologus_brichardi
ENSSDUG00000008943	-	87	42.165	ENSNBRG00000005805	-	96	41.429	Neolamprologus_brichardi
ENSSDUG00000008943	-	100	39.416	ENSNBRG00000016564	-	85	39.416	Neolamprologus_brichardi
ENSSDUG00000008943	-	92	43.359	ENSNBRG00000005849	-	90	45.763	Neolamprologus_brichardi
ENSSDUG00000008943	-	92	55.263	ENSNBRG00000003000	-	81	52.308	Neolamprologus_brichardi
ENSSDUG00000008943	-	91	43.077	ENSONIG00000015514	-	96	45.066	Oreochromis_niloticus
ENSSDUG00000008943	-	85	48.227	ENSONIG00000005693	-	93	48.227	Oreochromis_niloticus
ENSSDUG00000008943	-	92	40.179	ENSONIG00000015552	-	98	40.179	Oreochromis_niloticus
ENSSDUG00000008943	-	87	51.562	ENSOARG00000002999	ZNF32	73	52.083	Ovis_aries
ENSSDUG00000008943	-	90	50.838	ENSPLAG00000015973	-	99	50.838	Poecilia_latipinna
ENSSDUG00000008943	-	99	49.405	ENSPMEG00000006726	-	98	53.368	Poecilia_mexicana
ENSSDUG00000008943	-	96	53.731	ENSPMEG00000016458	-	96	56.429	Poecilia_mexicana
ENSSDUG00000008943	-	89	48.315	ENSPREG00000010437	-	81	48.824	Poecilia_reticulata
ENSSDUG00000008943	-	99	45.636	ENSPCAG00000005270	-	98	47.419	Procavia_capensis
ENSSDUG00000008943	-	93	50.418	ENSPVAG00000009430	-	84	50.418	Pteropus_vampyrus
ENSSDUG00000008943	-	98	56.198	ENSPNYG00000007597	-	98	53.247	Pundamilia_nyererei
ENSSDUG00000008943	-	99	60.345	ENSPNYG00000002684	-	99	60.345	Pundamilia_nyererei
ENSSDUG00000008943	-	89	51.528	ENSPNAG00000029997	-	90	49.327	Pygocentrus_nattereri
ENSSDUG00000008943	-	99	48.133	ENSSFOG00015015878	-	97	48.133	Scleropages_formosus
ENSSDUG00000008943	-	85	58.553	ENSSLDG00000012036	-	98	58.462	Seriola_lalandi_dorsalis
ENSSDUG00000008943	-	99	56.621	ENSSLDG00000018273	-	94	51.977	Seriola_lalandi_dorsalis
ENSSDUG00000008943	-	98	86.813	ENSSLDG00000020675	-	97	99.333	Seriola_lalandi_dorsalis
ENSSDUG00000008943	-	87	48.961	ENSSARG00000000532	-	85	49.345	Sorex_araneus
ENSSDUG00000008943	-	99	53.571	ENSXCOG00000008116	-	99	51.592	Xiphophorus_couchianus