EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000009021 (Gene tree)
Gene ID: 111223539
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 17567 bases
Position: chrBDQW01000110.1:5080793-5098359
Accession: 111223539
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000012422	PUF	PF00806.19	2.9e-69	1	8
ENSSDUP00000012422	PUF	PF00806.19	2.9e-69	2	8
ENSSDUP00000012422	PUF	PF00806.19	2.9e-69	3	8
ENSSDUP00000012422	PUF	PF00806.19	2.9e-69	4	8
ENSSDUP00000012422	PUF	PF00806.19	2.9e-69	5	8
ENSSDUP00000012422	PUF	PF00806.19	2.9e-69	6	8
ENSSDUP00000012422	PUF	PF00806.19	2.9e-69	7	8
ENSSDUP00000012422	PUF	PF00806.19	2.9e-69	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000012644	-	3492	XM_022747728	ENSSDUP00000012422	1163 (aa)	XP_022603449	UPI000BBF0EA2

Gene Model

Click here to download ENSSDUG00000009021's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000009021's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000009021	pum1	88	65.982	ENSSDUG00000001800	pum2	55	78.195

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000009021	pum1	94	91.084	ENSG00000134644	PUM1	98	91.566	Homo_sapiens
ENSSDUG00000009021	pum1	100	99.398	ENSAPOG00000021632	pum1	100	99.398	Acanthochromis_polyacanthus
ENSSDUG00000009021	pum1	100	76.568	ENSAMEG00000017656	PUM1	97	74.380	Ailuropoda_melanoleuca
ENSSDUG00000009021	pum1	100	98.280	ENSACIG00000021013	pum1	100	98.280	Amphilophus_citrinellus
ENSSDUG00000009021	pum1	100	99.398	ENSAOCG00000003944	pum1	100	99.518	Amphiprion_ocellaris
ENSSDUG00000009021	pum1	100	99.398	ENSAPEG00000014550	pum1	100	99.518	Amphiprion_percula
ENSSDUG00000009021	pum1	100	99.226	ENSATEG00000016004	pum1	100	99.518	Anabas_testudineus
ENSSDUG00000009021	pum1	100	77.209	ENSAPLG00000009351	PUM1	100	74.855	Anas_platyrhynchos
ENSSDUG00000009021	pum1	100	76.656	ENSACAG00000000682	PUM1	98	76.076	Anolis_carolinensis
ENSSDUG00000009021	pum1	93	90.843	ENSANAG00000027865	PUM1	100	91.325	Aotus_nancymaae
ENSSDUG00000009021	pum1	92	98.779	ENSACLG00000019354	pum1	100	98.779	Astatotilapia_calliptera
ENSSDUG00000009021	pum1	100	82.373	ENSAMXG00000020607	pum1	96	82.373	Astyanax_mexicanus
ENSSDUG00000009021	pum1	94	91.566	ENSBTAG00000018979	PUM1	100	92.048	Bos_taurus
ENSSDUG00000009021	pum1	94	91.084	ENSCJAG00000006035	PUM1	100	81.188	Callithrix_jacchus
ENSSDUG00000009021	pum1	93	78.656	ENSCAFG00020024616	PUM1	98	81.312	Canis_lupus_dingo
ENSSDUG00000009021	pum1	94	91.084	ENSCHIG00000012952	PUM1	100	91.566	Capra_hircus
ENSSDUG00000009021	pum1	100	76.548	ENSTSYG00000008868	PUM1	100	82.410	Carlito_syrichta
ENSSDUG00000009021	pum1	100	76.383	ENSCPOG00000031613	PUM1	100	80.941	Cavia_porcellus
ENSSDUG00000009021	pum1	94	91.566	ENSCATG00000017991	PUM1	93	92.048	Cercocebus_atys
ENSSDUG00000009021	pum1	94	90.843	ENSCLAG00000007662	PUM1	100	81.930	Chinchilla_lanigera
ENSSDUG00000009021	pum1	100	75.614	ENSCSAG00000001028	PUM1	100	73.361	Chlorocebus_sabaeus
ENSSDUG00000009021	pum1	93	66.245	ENSCHOG00000010245	PUM1	93	65.700	Choloepus_hoffmanni
ENSSDUG00000009021	pum1	94	91.807	ENSCPBG00000009288	PUM1	100	91.807	Chrysemys_picta_bellii
ENSSDUG00000009021	pum1	94	91.084	ENSCANG00000042606	PUM1	100	91.566	Colobus_angolensis_palliatus
ENSSDUG00000009021	pum1	100	76.344	ENSCGRG00001024949	Pum1	100	82.818	Cricetulus_griseus_chok1gshd
ENSSDUG00000009021	pum1	100	76.344	ENSCGRG00000014197	Pum1	100	82.818	Cricetulus_griseus_crigri
ENSSDUG00000009021	pum1	92	97.188	ENSCSEG00000015981	pum1	100	97.188	Cynoglossus_semilaevis
ENSSDUG00000009021	pum1	100	97.592	ENSCVAG00000007043	pum1	100	97.592	Cyprinodon_variegatus
ENSSDUG00000009021	pum1	100	84.166	ENSDARG00000099256	pum1	100	81.610	Danio_rerio
ENSSDUG00000009021	pum1	100	76.961	ENSDNOG00000010939	PUM1	100	74.855	Dasypus_novemcinctus
ENSSDUG00000009021	pum1	90	73.295	ENSETEG00000004355	PUM1	87	71.415	Echinops_telfairi
ENSSDUG00000009021	pum1	100	76.694	ENSEASG00005010813	PUM1	100	74.421	Equus_asinus_asinus
ENSSDUG00000009021	pum1	100	76.548	ENSECAG00000021369	PUM1	100	74.276	Equus_caballus
ENSSDUG00000009021	pum1	76	90.667	ENSEEUG00000003871	PUM1	74	91.111	Erinaceus_europaeus
ENSSDUG00000009021	pum1	100	89.590	ENSELUG00000002409	pum1	100	93.220	Esox_lucius
ENSSDUG00000009021	pum1	100	76.713	ENSFCAG00000010374	PUM1	100	81.312	Felis_catus
ENSSDUG00000009021	pum1	100	76.891	ENSFALG00000001214	PUM1	97	74.712	Ficedula_albicollis
ENSSDUG00000009021	pum1	100	76.383	ENSFDAG00000011319	PUM1	100	80.941	Fukomys_damarensis
ENSSDUG00000009021	pum1	100	91.212	ENSGMOG00000010491	pum1	100	91.297	Gadus_morhua
ENSSDUG00000009021	pum1	96	90.141	ENSGALG00000042598	PUM1	99	90.141	Gallus_gallus
ENSSDUG00000009021	pum1	100	97.936	ENSGAFG00000015617	pum1	100	98.072	Gambusia_affinis
ENSSDUG00000009021	pum1	99	97.241	ENSGACG00000005717	pum1	100	97.241	Gasterosteus_aculeatus
ENSSDUG00000009021	pum1	96	90.342	ENSGAGG00000001290	PUM1	99	90.342	Gopherus_agassizii
ENSSDUG00000009021	pum1	94	91.084	ENSGGOG00000011983	PUM1	100	91.566	Gorilla_gorilla
ENSSDUG00000009021	pum1	100	98.882	ENSHBUG00000018718	pum1	100	98.882	Haplochromis_burtoni
ENSSDUG00000009021	pum1	100	76.301	ENSHGLG00000013819	Pum1	100	80.817	Heterocephalus_glaber_female
ENSSDUG00000009021	pum1	100	76.301	ENSHGLG00100008621	Pum1	100	80.817	Heterocephalus_glaber_male
ENSSDUG00000009021	pum1	92	91.088	ENSHCOG00000005149	pum1	100	89.775	Hippocampus_comes
ENSSDUG00000009021	pum1	100	81.213	ENSIPUG00000020421	pum1	100	81.213	Ictalurus_punctatus
ENSSDUG00000009021	pum1	100	76.694	ENSSTOG00000010757	PUM1	100	81.188	Ictidomys_tridecemlineatus
ENSSDUG00000009021	pum1	100	76.694	ENSJJAG00000000530	Pum1	100	81.188	Jaculus_jaculus
ENSSDUG00000009021	pum1	100	98.366	ENSKMAG00000003481	pum1	100	98.366	Kryptolebias_marmoratus
ENSSDUG00000009021	pum1	100	98.452	ENSLBEG00000002527	pum1	100	98.452	Labrus_bergylta
ENSSDUG00000009021	pum1	100	75.842	ENSLACG00000017188	PUM1	99	73.262	Latimeria_chalumnae
ENSSDUG00000009021	pum1	100	82.250	ENSLOCG00000005210	pum1	99	81.167	Lepisosteus_oculatus
ENSSDUG00000009021	pum1	100	76.763	ENSLAFG00000003178	PUM1	100	74.896	Loxodonta_africana
ENSSDUG00000009021	pum1	94	91.566	ENSMFAG00000010291	PUM1	100	92.048	Macaca_fascicularis
ENSSDUG00000009021	pum1	94	91.084	ENSMMUG00000013520	PUM1	100	91.566	Macaca_mulatta
ENSSDUG00000009021	pum1	94	91.084	ENSMNEG00000034639	PUM1	100	91.566	Macaca_nemestrina
ENSSDUG00000009021	pum1	94	91.084	ENSMLEG00000038743	PUM1	100	91.566	Mandrillus_leucophaeus
ENSSDUG00000009021	pum1	100	98.882	ENSMAMG00000011606	pum1	100	98.882	Mastacembelus_armatus
ENSSDUG00000009021	pum1	100	98.882	ENSMZEG00005005834	pum1	100	98.882	Maylandia_zebra
ENSSDUG00000009021	pum1	100	77.438	ENSMGAG00000000724	PUM1	100	77.035	Meleagris_gallopavo
ENSSDUG00000009021	pum1	100	76.427	ENSMAUG00000022090	Pum1	100	83.045	Mesocricetus_auratus
ENSSDUG00000009021	pum1	94	90.843	ENSMICG00000007713	-	100	91.325	Microcebus_murinus
ENSSDUG00000009021	pum1	94	90.144	ENSMICG00000012213	-	100	88.675	Microcebus_murinus
ENSSDUG00000009021	pum1	100	76.529	ENSMOCG00000015463	Pum1	100	82.942	Microtus_ochrogaster
ENSSDUG00000009021	pum1	80	99.167	ENSMMOG00000019817	pum1	57	99.167	Mola_mola
ENSSDUG00000009021	pum1	100	76.636	ENSMODG00000017067	PUM1	100	74.523	Monodelphis_domestica
ENSSDUG00000009021	pum1	85	99.518	ENSMALG00000016399	pum1	100	99.518	Monopterus_albus
ENSSDUG00000009021	pum1	100	76.198	MGP_CAROLIEiJ_G0026549	Pum1	100	80.817	Mus_caroli
ENSSDUG00000009021	pum1	100	76.198	ENSMUSG00000028580	Pum1	100	80.693	Mus_musculus
ENSSDUG00000009021	pum1	100	76.116	MGP_PahariEiJ_G0028881	Pum1	100	80.693	Mus_pahari
ENSSDUG00000009021	pum1	100	76.116	MGP_SPRETEiJ_G0027529	Pum1	100	80.569	Mus_spretus
ENSSDUG00000009021	pum1	100	76.777	ENSMPUG00000015454	PUM1	100	74.421	Mustela_putorius_furo
ENSSDUG00000009021	pum1	100	76.548	ENSMLUG00000006490	PUM1	100	74.194	Myotis_lucifugus
ENSSDUG00000009021	pum1	100	76.612	ENSNGAG00000002378	Pum1	100	81.188	Nannospalax_galili
ENSSDUG00000009021	pum1	79	99.000	ENSNBRG00000010689	pum1	100	99.000	Neolamprologus_brichardi
ENSSDUG00000009021	pum1	94	87.952	ENSNLEG00000001151	PUM1	100	88.434	Nomascus_leucogenys
ENSSDUG00000009021	pum1	73	78.621	ENSMEUG00000000976	-	67	80.418	Notamacropus_eugenii
ENSSDUG00000009021	pum1	82	91.589	ENSOPRG00000001776	PUM1	70	91.589	Ochotona_princeps
ENSSDUG00000009021	pum1	100	76.446	ENSODEG00000003465	PUM1	100	80.941	Octodon_degus
ENSSDUG00000009021	pum1	100	99.226	ENSONIG00000002290	pum1	100	99.226	Oreochromis_niloticus
ENSSDUG00000009021	pum1	85	63.737	ENSOANG00000004902	-	100	61.336	Ornithorhynchus_anatinus
ENSSDUG00000009021	pum1	99	76.592	ENSOCUG00000008641	PUM1	99	74.316	Oryctolagus_cuniculus
ENSSDUG00000009021	pum1	100	98.115	ENSORLG00000011482	pum1	100	98.115	Oryzias_latipes
ENSSDUG00000009021	pum1	100	98.115	ENSORLG00020019461	pum1	100	98.115	Oryzias_latipes_hni
ENSSDUG00000009021	pum1	100	98.115	ENSORLG00015011375	pum1	100	98.115	Oryzias_latipes_hsok
ENSSDUG00000009021	pum1	87	98.554	ENSOMEG00000009312	pum1	100	98.554	Oryzias_melastigma
ENSSDUG00000009021	pum1	100	74.068	ENSOGAG00000011063	PUM1	100	71.867	Otolemur_garnettii
ENSSDUG00000009021	pum1	94	91.084	ENSOARG00000001899	PUM1	100	91.566	Ovis_aries
ENSSDUG00000009021	pum1	94	91.084	ENSPPAG00000044003	PUM1	100	91.566	Pan_paniscus
ENSSDUG00000009021	pum1	100	76.777	ENSPPRG00000001370	PUM1	100	81.312	Panthera_pardus
ENSSDUG00000009021	pum1	100	76.612	ENSPTIG00000010798	PUM1	100	81.312	Panthera_tigris_altaica
ENSSDUG00000009021	pum1	94	91.084	ENSPTRG00000000453	PUM1	100	91.566	Pan_troglodytes
ENSSDUG00000009021	pum1	94	91.566	ENSPANG00000016338	PUM1	100	92.048	Papio_anubis
ENSSDUG00000009021	pum1	95	92.530	ENSPKIG00000010578	pum1	100	77.519	Paramormyrops_kingsleyae
ENSSDUG00000009021	pum1	100	77.427	ENSPSIG00000014118	PUM1	100	75.083	Pelodiscus_sinensis
ENSSDUG00000009021	pum1	79	98.305	ENSPMGG00000005836	pum1	100	98.305	Periophthalmus_magnuspinnatus
ENSSDUG00000009021	pum1	100	76.427	ENSPEMG00000010009	Pum1	100	83.045	Peromyscus_maniculatus_bairdii
ENSSDUG00000009021	pum1	94	91.807	ENSPCIG00000014151	PUM1	100	91.566	Phascolarctos_cinereus
ENSSDUG00000009021	pum1	95	97.305	ENSPFOG00000007289	pum1	99	97.840	Poecilia_formosa
ENSSDUG00000009021	pum1	100	94.900	ENSPLAG00000007256	pum1	100	97.778	Poecilia_latipinna
ENSSDUG00000009021	pum1	92	97.292	ENSPMEG00000019543	pum1	99	97.292	Poecilia_mexicana
ENSSDUG00000009021	pum1	100	98.022	ENSPREG00000005195	pum1	100	98.022	Poecilia_reticulata
ENSSDUG00000009021	pum1	100	75.203	ENSPPYG00000001621	PUM1	100	73.052	Pongo_abelii
ENSSDUG00000009021	pum1	76	93.519	ENSPCAG00000001979	PUM1	73	93.519	Procavia_capensis
ENSSDUG00000009021	pum1	94	90.843	ENSPCOG00000004398	PUM1	100	91.325	Propithecus_coquereli
ENSSDUG00000009021	pum1	100	74.855	ENSPVAG00000005207	PUM1	97	72.659	Pteropus_vampyrus
ENSSDUG00000009021	pum1	100	98.968	ENSPNYG00000009518	pum1	100	98.968	Pundamilia_nyererei
ENSSDUG00000009021	pum1	100	82.881	ENSPNAG00000026728	pum1	100	82.773	Pygocentrus_nattereri
ENSSDUG00000009021	pum1	100	76.281	ENSRNOG00000011709	Pum1	100	74.089	Rattus_norvegicus
ENSSDUG00000009021	pum1	94	91.566	ENSRBIG00000042521	PUM1	100	92.048	Rhinopithecus_bieti
ENSSDUG00000009021	pum1	94	91.084	ENSRROG00000020156	PUM1	100	91.566	Rhinopithecus_roxellana
ENSSDUG00000009021	pum1	94	91.084	ENSSBOG00000032037	PUM1	100	91.566	Saimiri_boliviensis_boliviensis
ENSSDUG00000009021	pum1	100	76.719	ENSSHAG00000010918	PUM1	100	74.689	Sarcophilus_harrisii
ENSSDUG00000009021	pum1	100	98.022	ENSSMAG00000010918	pum1	100	99.518	Scophthalmus_maximus
ENSSDUG00000009021	pum1	93	100.000	ENSSLDG00000009667	pum1	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000009021	pum1	94	80.111	ENSSARG00000003055	PUM1	88	79.395	Sorex_araneus
ENSSDUG00000009021	pum1	100	77.190	ENSSPUG00000006267	PUM1	100	74.834	Sphenodon_punctatus
ENSSDUG00000009021	pum1	100	99.484	ENSSPAG00000016636	pum1	100	99.518	Stegastes_partitus
ENSSDUG00000009021	pum1	100	88.934	ENSSSCG00000003591	PUM1	100	92.048	Sus_scrofa
ENSSDUG00000009021	pum1	100	98.366	ENSTRUG00000013121	pum1	100	99.153	Takifugu_rubripes
ENSSDUG00000009021	pum1	100	97.350	ENSTNIG00000016983	pum1	99	97.350	Tetraodon_nigroviridis
ENSSDUG00000009021	pum1	87	90.244	ENSTBEG00000013810	PUM1	89	90.244	Tupaia_belangeri
ENSSDUG00000009021	pum1	93	79.436	ENSTTRG00000007436	PUM1	88	76.937	Tursiops_truncatus
ENSSDUG00000009021	pum1	99	74.864	ENSUAMG00000018262	-	100	72.464	Ursus_americanus
ENSSDUG00000009021	pum1	92	83.827	ENSVPAG00000005902	PUM1	92	81.683	Vicugna_pacos
ENSSDUG00000009021	pum1	100	76.631	ENSVVUG00000014631	PUM1	100	76.225	Vulpes_vulpes
ENSSDUG00000009021	pum1	100	73.410	ENSXETG00000012904	pum1	99	71.795	Xenopus_tropicalis
ENSSDUG00000009021	pum1	100	97.592	ENSXMAG00000002945	pum1	100	97.672	Xiphophorus_maculatus