EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000009098 (Gene tree)
Gene ID: 111227244
Gene Symbol: ern1
Alias: sb:eu1005|zgc:109932
Full Name: endoplasmic reticulum to nucleus signaling 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 21035 bases
Position: chrBDQW01000169.1:2077974-2099008
Accession: 111227244
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000012567	Ribonuc_2-5A	PF06479.12	3.1e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000012789	-	4516	XM_022752677	ENSSDUP00000012567	1096 (aa)	XP_022608398	UPI000BBE4DC5

Gene Model

Click here to download ENSSDUG00000009098's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu04140	Autophagy - animal	KEGG
sdu04141	Protein processing in endoplasmic reticulum	KEGG
sdu04210	Apoptosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000009098's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000009098	ern1	85	56.159	ENSSDUG00000016726	ern2	98	55.918

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000009098	ern1	97	91.509	ENSAPOG00000009999	ern1	97	91.509	Acanthochromis_polyacanthus
ENSSDUG00000009098	ern1	100	90.146	ENSACIG00000021716	ern1	100	90.146	Amphilophus_citrinellus
ENSSDUG00000009098	ern1	99	90.585	ENSAOCG00000012309	ern1	100	90.585	Amphiprion_ocellaris
ENSSDUG00000009098	ern1	99	90.219	ENSAPEG00000011263	ern1	98	95.676	Amphiprion_percula
ENSSDUG00000009098	ern1	100	90.893	ENSATEG00000024468	ern1	100	90.893	Anabas_testudineus
ENSSDUG00000009098	ern1	100	90.876	ENSACLG00000027919	ern1	100	90.876	Astatotilapia_calliptera
ENSSDUG00000009098	ern1	96	80.722	ENSAMXG00000000944	ern1	99	80.722	Astyanax_mexicanus
ENSSDUG00000009098	ern1	94	89.796	ENSCSEG00000014500	ern1	100	90.185	Cynoglossus_semilaevis
ENSSDUG00000009098	ern1	98	85.953	ENSCVAG00000002988	ern1	97	89.557	Cyprinodon_variegatus
ENSSDUG00000009098	ern1	90	81.672	ENSDARG00000013997	ern1	100	83.247	Danio_rerio
ENSSDUG00000009098	ern1	88	83.486	ENSELUG00000005957	ern1	93	83.690	Esox_lucius
ENSSDUG00000009098	ern1	98	86.313	ENSFHEG00000005578	ern1	99	86.313	Fundulus_heteroclitus
ENSSDUG00000009098	ern1	86	88.085	ENSGMOG00000011232	ern1	100	88.085	Gadus_morhua
ENSSDUG00000009098	ern1	99	86.414	ENSGAFG00000020231	ern1	99	86.414	Gambusia_affinis
ENSSDUG00000009098	ern1	86	93.114	ENSGACG00000011700	ern1	98	93.114	Gasterosteus_aculeatus
ENSSDUG00000009098	ern1	99	89.770	ENSHBUG00000012581	ern1	99	90.270	Haplochromis_burtoni
ENSSDUG00000009098	ern1	99	84.235	ENSHCOG00000016199	ern1	99	84.358	Hippocampus_comes
ENSSDUG00000009098	ern1	92	81.641	ENSIPUG00000011083	ern1	98	81.641	Ictalurus_punctatus
ENSSDUG00000009098	ern1	99	86.197	ENSKMAG00000019499	ern1	100	86.197	Kryptolebias_marmoratus
ENSSDUG00000009098	ern1	98	87.210	ENSLBEG00000025907	ern1	100	87.210	Labrus_bergylta
ENSSDUG00000009098	ern1	100	91.348	ENSMAMG00000023439	ern1	100	91.348	Mastacembelus_armatus
ENSSDUG00000009098	ern1	100	90.876	ENSMZEG00005003221	ern1	100	90.876	Maylandia_zebra
ENSSDUG00000009098	ern1	89	92.608	ENSMMOG00000007650	ern1	97	92.608	Mola_mola
ENSSDUG00000009098	ern1	99	89.416	ENSMALG00000017775	ern1	98	89.416	Monopterus_albus
ENSSDUG00000009098	ern1	99	89.493	ENSNBRG00000002179	ern1	99	89.493	Neolamprologus_brichardi
ENSSDUG00000009098	ern1	86	94.174	ENSONIG00000017169	ern1	98	94.174	Oreochromis_niloticus
ENSSDUG00000009098	ern1	98	86.494	ENSORLG00000008940	ern1	100	86.494	Oryzias_latipes
ENSSDUG00000009098	ern1	98	86.586	ENSORLG00020018387	ern1	100	86.586	Oryzias_latipes_hni
ENSSDUG00000009098	ern1	98	86.494	ENSORLG00015007946	ern1	100	86.494	Oryzias_latipes_hsok
ENSSDUG00000009098	ern1	98	87.118	ENSOMEG00000011741	ern1	100	87.118	Oryzias_melastigma
ENSSDUG00000009098	ern1	90	82.150	ENSPKIG00000005593	ern1	99	82.150	Paramormyrops_kingsleyae
ENSSDUG00000009098	ern1	99	84.384	ENSPMGG00000020442	ern1	97	89.033	Periophthalmus_magnuspinnatus
ENSSDUG00000009098	ern1	98	87.465	ENSPFOG00000007378	ern1	99	87.465	Poecilia_formosa
ENSSDUG00000009098	ern1	98	87.256	ENSPLAG00000014780	ern1	99	87.256	Poecilia_latipinna
ENSSDUG00000009098	ern1	98	87.535	ENSPMEG00000016324	ern1	99	87.535	Poecilia_mexicana
ENSSDUG00000009098	ern1	98	86.803	ENSPREG00000006286	ern1	99	86.803	Poecilia_reticulata
ENSSDUG00000009098	ern1	100	90.967	ENSPNYG00000017929	ern1	99	93.683	Pundamilia_nyererei
ENSSDUG00000009098	ern1	91	83.383	ENSPNAG00000029447	ern1	97	83.680	Pygocentrus_nattereri
ENSSDUG00000009098	ern1	100	90.164	ENSSMAG00000015042	ern1	100	90.164	Scophthalmus_maximus
ENSSDUG00000009098	ern1	100	99.088	ENSSLDG00000023254	ern1	100	99.088	Seriola_lalandi_dorsalis
ENSSDUG00000009098	ern1	99	90.411	ENSSPAG00000017539	ern1	99	90.458	Stegastes_partitus
ENSSDUG00000009098	ern1	93	87.610	ENSTRUG00000001041	ern1	98	87.610	Takifugu_rubripes
ENSSDUG00000009098	ern1	85	93.033	ENSTNIG00000017990	ern1	99	92.025	Tetraodon_nigroviridis
ENSSDUG00000009098	ern1	90	92.057	ENSXCOG00000010330	ern1	97	92.057	Xiphophorus_couchianus
ENSSDUG00000009098	ern1	98	86.884	ENSXMAG00000001310	ern1	99	86.884	Xiphophorus_maculatus