EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000009163 (Gene tree)
Gene ID: 111237914
Gene Symbol: si:dkey-37o8.1
Alias: fi12b10|wu:fi12b10
Full Name: elongation factor 1-alpha-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 1946 bases
Position: chrBDQW01001124.1:2388597-2390542
Accession: 111237914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000012595	GTP_EFTU	PF00009.27	6.4e-55	1	1
ENSSDUP00000012595	MMR_HSR1	PF01926.23	8.3e-08	1	1
ENSSDUP00000012595	GTP_EFTU_D2	PF03144.25	1.6e-12	1	1
ENSSDUP00000012595	GTP_EFTU_D3	PF03143.17	1.5e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000012818	-	1374	XM_022767225	ENSSDUP00000012595	457 (aa)	XP_022622946	UPI000BBED85F

Gene Model

Click here to download ENSSDUG00000009163's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000009163's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000009163	si:dkey-37o8.1	100	71.772	ENSSDUG00000008223	-	98	71.772
ENSSDUG00000009163	si:dkey-37o8.1	97	71.783	ENSSDUG00000020050	EEF1A1	96	71.783
ENSSDUG00000009163	si:dkey-37o8.1	97	71.493	ENSSDUG00000008198	-	96	71.493
ENSSDUG00000009163	si:dkey-37o8.1	95	36.927	ENSSDUG00000008404	GSPT1	72	36.674
ENSSDUG00000009163	si:dkey-37o8.1	96	30.425	ENSSDUG00000016896	tufm	87	30.425
ENSSDUG00000009163	si:dkey-37o8.1	97	72.009	ENSSDUG00000004897	eef1a1b	96	72.009
ENSSDUG00000009163	si:dkey-37o8.1	95	37.241	ENSSDUG00000016908	gspt1l	75	37.241
ENSSDUG00000009163	si:dkey-37o8.1	95	37.585	ENSSDUG00000012974	hbs1l	61	37.585

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000009163	si:dkey-37o8.1	100	92.560	ENSAPOG00000016459	si:dkey-37o8.1	100	92.560	Acanthochromis_polyacanthus
ENSSDUG00000009163	si:dkey-37o8.1	96	91.304	ENSACIG00000020985	si:dkey-37o8.1	82	91.304	Amphilophus_citrinellus
ENSSDUG00000009163	si:dkey-37o8.1	100	94.311	ENSAOCG00000002663	si:dkey-37o8.1	100	94.311	Amphiprion_ocellaris
ENSSDUG00000009163	si:dkey-37o8.1	100	94.092	ENSAPEG00000012670	si:dkey-37o8.1	100	94.092	Amphiprion_percula
ENSSDUG00000009163	si:dkey-37o8.1	92	95.498	ENSATEG00000002217	si:dkey-37o8.1	99	95.498	Anabas_testudineus
ENSSDUG00000009163	si:dkey-37o8.1	100	91.904	ENSACLG00000003519	si:dkey-37o8.1	100	91.904	Astatotilapia_calliptera
ENSSDUG00000009163	si:dkey-37o8.1	100	85.371	ENSAMXG00000002728	si:dkey-37o8.1	100	85.371	Astyanax_mexicanus
ENSSDUG00000009163	si:dkey-37o8.1	96	74.487	ENSCPBG00000020570	-	87	74.487	Chrysemys_picta_bellii
ENSSDUG00000009163	si:dkey-37o8.1	100	87.364	ENSCSEG00000019807	si:dkey-37o8.1	100	86.638	Cynoglossus_semilaevis
ENSSDUG00000009163	si:dkey-37o8.1	99	89.868	ENSCVAG00000009828	si:dkey-37o8.1	99	89.868	Cyprinodon_variegatus
ENSSDUG00000009163	si:dkey-37o8.1	100	82.096	ENSDARG00000071727	si:dkey-37o8.1	95	82.096	Danio_rerio
ENSSDUG00000009163	si:dkey-37o8.1	98	85.045	ENSELUG00000007495	si:dkey-37o8.1	98	85.045	Esox_lucius
ENSSDUG00000009163	si:dkey-37o8.1	100	89.934	ENSFHEG00000017452	si:dkey-37o8.1	100	89.934	Fundulus_heteroclitus
ENSSDUG00000009163	si:dkey-37o8.1	99	81.718	ENSGMOG00000006122	si:dkey-37o8.1	100	81.718	Gadus_morhua
ENSSDUG00000009163	si:dkey-37o8.1	98	84.889	ENSGAFG00000000367	si:dkey-37o8.1	100	84.889	Gambusia_affinis
ENSSDUG00000009163	si:dkey-37o8.1	100	91.466	ENSGACG00000004505	si:dkey-37o8.1	100	91.466	Gasterosteus_aculeatus
ENSSDUG00000009163	si:dkey-37o8.1	96	74.943	ENSGAGG00000007724	-	93	77.885	Gopherus_agassizii
ENSSDUG00000009163	si:dkey-37o8.1	100	91.685	ENSHBUG00000015515	si:dkey-37o8.1	100	91.685	Haplochromis_burtoni
ENSSDUG00000009163	si:dkey-37o8.1	98	81.514	ENSHCOG00000001215	si:dkey-37o8.1	99	81.514	Hippocampus_comes
ENSSDUG00000009163	si:dkey-37o8.1	100	82.969	ENSIPUG00000004067	si:dkey-37o8.1	100	82.969	Ictalurus_punctatus
ENSSDUG00000009163	si:dkey-37o8.1	100	89.716	ENSKMAG00000015910	si:dkey-37o8.1	100	89.716	Kryptolebias_marmoratus
ENSSDUG00000009163	si:dkey-37o8.1	100	94.311	ENSLBEG00000021334	si:dkey-37o8.1	90	94.311	Labrus_bergylta
ENSSDUG00000009163	si:dkey-37o8.1	97	77.652	ENSLACG00000003948	si:dkey-37o8.1	96	77.652	Latimeria_chalumnae
ENSSDUG00000009163	si:dkey-37o8.1	98	81.879	ENSLOCG00000011245	si:dkey-37o8.1	97	81.879	Lepisosteus_oculatus
ENSSDUG00000009163	si:dkey-37o8.1	97	77.427	ENSMAMG00000009907	si:dkey-37o8.1	93	77.427	Mastacembelus_armatus
ENSSDUG00000009163	si:dkey-37o8.1	100	91.904	ENSMZEG00005018358	si:dkey-37o8.1	100	91.904	Maylandia_zebra
ENSSDUG00000009163	si:dkey-37o8.1	98	92.650	ENSMMOG00000004111	si:dkey-37o8.1	98	92.650	Mola_mola
ENSSDUG00000009163	si:dkey-37o8.1	96	83.105	ENSMALG00000017152	si:dkey-37o8.1	99	83.105	Monopterus_albus
ENSSDUG00000009163	si:dkey-37o8.1	100	91.904	ENSNBRG00000013552	si:dkey-37o8.1	100	91.904	Neolamprologus_brichardi
ENSSDUG00000009163	si:dkey-37o8.1	100	91.685	ENSONIG00000006165	si:dkey-37o8.1	100	91.685	Oreochromis_niloticus
ENSSDUG00000009163	si:dkey-37o8.1	100	91.466	ENSORLG00000019066	si:dkey-37o8.1	100	91.466	Oryzias_latipes
ENSSDUG00000009163	si:dkey-37o8.1	100	91.466	ENSORLG00020008094	si:dkey-37o8.1	100	91.466	Oryzias_latipes_hni
ENSSDUG00000009163	si:dkey-37o8.1	100	91.247	ENSORLG00015008410	si:dkey-37o8.1	100	91.247	Oryzias_latipes_hsok
ENSSDUG00000009163	si:dkey-37o8.1	98	92.411	ENSOMEG00000001868	si:dkey-37o8.1	98	92.411	Oryzias_melastigma
ENSSDUG00000009163	si:dkey-37o8.1	100	82.789	ENSPKIG00000017246	si:dkey-37o8.1	100	82.789	Paramormyrops_kingsleyae
ENSSDUG00000009163	si:dkey-37o8.1	58	68.148	ENSPSIG00000008080	-	95	68.148	Pelodiscus_sinensis
ENSSDUG00000009163	si:dkey-37o8.1	100	90.372	ENSPFOG00000013173	si:dkey-37o8.1	100	90.372	Poecilia_formosa
ENSSDUG00000009163	si:dkey-37o8.1	100	89.278	ENSPLAG00000010405	si:dkey-37o8.1	100	89.278	Poecilia_latipinna
ENSSDUG00000009163	si:dkey-37o8.1	100	90.810	ENSPMEG00000015233	si:dkey-37o8.1	100	90.810	Poecilia_mexicana
ENSSDUG00000009163	si:dkey-37o8.1	99	90.529	ENSPREG00000006280	si:dkey-37o8.1	100	90.529	Poecilia_reticulata
ENSSDUG00000009163	si:dkey-37o8.1	100	91.685	ENSPNYG00000002059	si:dkey-37o8.1	100	91.685	Pundamilia_nyererei
ENSSDUG00000009163	si:dkey-37o8.1	100	84.061	ENSPNAG00000009990	si:dkey-37o8.1	100	84.061	Pygocentrus_nattereri
ENSSDUG00000009163	si:dkey-37o8.1	97	83.296	ENSSFOG00015019070	si:dkey-37o8.1	97	83.296	Scleropages_formosus
ENSSDUG00000009163	si:dkey-37o8.1	100	95.842	ENSSMAG00000016143	si:dkey-37o8.1	100	95.842	Scophthalmus_maximus
ENSSDUG00000009163	si:dkey-37o8.1	100	99.781	ENSSLDG00000023761	si:dkey-37o8.1	100	99.781	Seriola_lalandi_dorsalis
ENSSDUG00000009163	si:dkey-37o8.1	99	70.640	ENSSPUG00000007467	-	99	70.640	Sphenodon_punctatus
ENSSDUG00000009163	si:dkey-37o8.1	100	93.873	ENSSPAG00000013856	si:dkey-37o8.1	100	93.873	Stegastes_partitus
ENSSDUG00000009163	si:dkey-37o8.1	99	92.731	ENSTRUG00000009006	si:dkey-37o8.1	100	92.731	Takifugu_rubripes
ENSSDUG00000009163	si:dkey-37o8.1	99	91.886	ENSTNIG00000017138	si:dkey-37o8.1	98	91.886	Tetraodon_nigroviridis
ENSSDUG00000009163	si:dkey-37o8.1	96	78.132	ENSXETG00000017744	42Sp50	97	76.497	Xenopus_tropicalis
ENSSDUG00000009163	si:dkey-37o8.1	99	90.749	ENSXCOG00000012296	si:dkey-37o8.1	100	93.407	Xiphophorus_couchianus
ENSSDUG00000009163	si:dkey-37o8.1	100	91.028	ENSXMAG00000001998	si:dkey-37o8.1	100	91.028	Xiphophorus_maculatus