EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000009397 (Gene tree)
Gene ID: 111236847
Gene Symbol: -
Alias: -
Full Name: G-rich RNA sequence binding factor 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 7672 bases
Position: chrBDQW01000733.1:534771-542442
Accession: 111236847
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000013033	RRM_1	PF00076.22	6e-24	1	2
ENSSDUP00000013033	RRM_1	PF00076.22	6e-24	2	2
ENSSDUP00000012977	RRM_1	PF00076.22	1.2e-23	1	2
ENSSDUP00000012977	RRM_1	PF00076.22	1.2e-23	2	2
ENSSDUP00000013016	RRM_1	PF00076.22	2.1e-23	1	2
ENSSDUP00000013016	RRM_1	PF00076.22	2.1e-23	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000013213	-	1008	-	ENSSDUP00000012977	335 (aa)	-	-
ENSSDUT00000013271	-	900	-	ENSSDUP00000013033	299 (aa)	-	-
ENSSDUT00000013252	-	1137	XM_022765724	ENSSDUP00000013016	378 (aa)	XP_022621445	-

Gene Model

Click here to download ENSSDUG00000009397's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000009397's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000009397	-	92	40.979	ENSSDUG00000008785	hnrnph1	80	41.411
ENSSDUG00000009397	-	89	56.250	ENSSDUG00000000160	hnrnph3	85	46.409

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000009397	-	99	65.875	ENSAPOG00000012487	grsf1	100	62.315	Acanthochromis_polyacanthus
ENSSDUG00000009397	-	95	75.503	ENSACIG00000005871	grsf1	100	68.814	Amphilophus_citrinellus
ENSSDUG00000009397	-	99	66.467	ENSAOCG00000017462	-	100	62.129	Amphiprion_ocellaris
ENSSDUG00000009397	-	99	66.467	ENSAPEG00000007240	-	100	61.975	Amphiprion_percula
ENSSDUG00000009397	-	98	68.788	ENSATEG00000007185	grsf1	100	65.578	Anabas_testudineus
ENSSDUG00000009397	-	100	69.091	ENSACLG00000003685	-	100	63.235	Astatotilapia_calliptera
ENSSDUG00000009397	-	96	54.514	ENSAMXG00000012270	grsf1	98	54.754	Astyanax_mexicanus
ENSSDUG00000009397	-	98	74.286	ENSCSEG00000019209	-	92	68.000	Cynoglossus_semilaevis
ENSSDUG00000009397	-	96	69.831	ENSCVAG00000004476	grsf1	100	63.708	Cyprinodon_variegatus
ENSSDUG00000009397	-	98	53.074	ENSDARG00000053021	grsf1	96	47.704	Danio_rerio
ENSSDUG00000009397	-	97	50.450	ENSFHEG00000013358	-	99	47.654	Fundulus_heteroclitus
ENSSDUG00000009397	-	77	65.789	ENSGMOG00000014047	grsf1	99	52.508	Gadus_morhua
ENSSDUG00000009397	-	98	62.145	ENSGAFG00000004496	grsf1	99	59.548	Gambusia_affinis
ENSSDUG00000009397	-	92	62.270	ENSGACG00000014447	grsf1	98	62.577	Gasterosteus_aculeatus
ENSSDUG00000009397	-	98	70.000	ENSHBUG00000006284	grsf1	99	63.391	Haplochromis_burtoni
ENSSDUG00000009397	-	96	62.013	ENSHCOG00000007715	-	100	56.122	Hippocampus_comes
ENSSDUG00000009397	-	95	60.137	ENSIPUG00000010533	grsf1	79	60.328	Ictalurus_punctatus
ENSSDUG00000009397	-	98	62.462	ENSKMAG00000004528	grsf1	100	55.269	Kryptolebias_marmoratus
ENSSDUG00000009397	-	91	61.564	ENSLBEG00000018100	grsf1	95	61.564	Labrus_bergylta
ENSSDUG00000009397	-	97	72.256	ENSMAMG00000002627	grsf1	99	66.500	Mastacembelus_armatus
ENSSDUG00000009397	-	100	69.091	ENSMZEG00005020633	-	100	63.235	Maylandia_zebra
ENSSDUG00000009397	-	96	71.429	ENSMMOG00000014231	grsf1	99	67.560	Mola_mola
ENSSDUG00000009397	-	98	71.257	ENSMALG00000000251	grsf1	99	67.076	Monopterus_albus
ENSSDUG00000009397	-	96	70.253	ENSNBRG00000017774	grsf1	96	63.184	Neolamprologus_brichardi
ENSSDUG00000009397	-	100	70.393	ENSONIG00000014119	grsf1	99	74.752	Oreochromis_niloticus
ENSSDUG00000009397	-	97	63.746	ENSORLG00000030211	grsf1	99	58.500	Oryzias_latipes
ENSSDUG00000009397	-	95	65.789	ENSORLG00020014383	grsf1	99	60.453	Oryzias_latipes_hni
ENSSDUG00000009397	-	97	62.840	ENSORLG00015006520	grsf1	84	65.443	Oryzias_latipes_hsok
ENSSDUG00000009397	-	97	67.576	ENSOMEG00000009181	grsf1	100	62.850	Oryzias_melastigma
ENSSDUG00000009397	-	96	56.173	ENSPKIG00000019432	grsf1	95	51.145	Paramormyrops_kingsleyae
ENSSDUG00000009397	-	99	65.782	ENSPMGG00000013654	grsf1	98	62.117	Periophthalmus_magnuspinnatus
ENSSDUG00000009397	-	97	63.205	ENSPFOG00000006122	grsf1	99	59.901	Poecilia_formosa
ENSSDUG00000009397	-	98	63.551	ENSPLAG00000020977	grsf1	99	61.000	Poecilia_latipinna
ENSSDUG00000009397	-	97	63.501	ENSPMEG00000012485	grsf1	99	60.149	Poecilia_mexicana
ENSSDUG00000009397	-	98	62.229	ENSPREG00000013383	grsf1	99	59.057	Poecilia_reticulata
ENSSDUG00000009397	-	98	68.769	ENSPNYG00000005379	grsf1	100	63.861	Pundamilia_nyererei
ENSSDUG00000009397	-	95	64.483	ENSPNAG00000014912	grsf1	82	61.012	Pygocentrus_nattereri
ENSSDUG00000009397	-	97	45.566	ENSSFOG00015014620	grsf1	82	45.741	Scleropages_formosus
ENSSDUG00000009397	-	98	64.545	ENSSMAG00000014181	grsf1	88	64.486	Scophthalmus_maximus
ENSSDUG00000009397	-	100	91.579	ENSSLDG00000025494	grsf1	100	91.579	Seriola_lalandi_dorsalis
ENSSDUG00000009397	-	98	62.538	ENSSPAG00000023296	grsf1	99	60.000	Stegastes_partitus
ENSSDUG00000009397	-	94	67.450	ENSTRUG00000015354	grsf1	100	60.969	Takifugu_rubripes
ENSSDUG00000009397	-	94	66.102	ENSTNIG00000015350	-	97	67.797	Tetraodon_nigroviridis
ENSSDUG00000009397	-	98	62.727	ENSXMAG00000029710	grsf1	100	59.194	Xiphophorus_maculatus