EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000009534 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 12076 bases
Position: chrBDQW01000383.1:662705-674780
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	1	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	2	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	3	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	4	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	5	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	6	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	7	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	8	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	9	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	10	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	11	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	12	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	13	14
ENSSDUP00000013120	zf-C2H2	PF00096.26	9e-78	14	14
ENSSDUP00000013112	zf-C2H2	PF00096.26	9.1e-39	1	8
ENSSDUP00000013112	zf-C2H2	PF00096.26	9.1e-39	2	8
ENSSDUP00000013112	zf-C2H2	PF00096.26	9.1e-39	3	8
ENSSDUP00000013112	zf-C2H2	PF00096.26	9.1e-39	4	8
ENSSDUP00000013112	zf-C2H2	PF00096.26	9.1e-39	5	8
ENSSDUP00000013112	zf-C2H2	PF00096.26	9.1e-39	6	8
ENSSDUP00000013112	zf-C2H2	PF00096.26	9.1e-39	7	8
ENSSDUP00000013112	zf-C2H2	PF00096.26	9.1e-39	8	8
ENSSDUP00000013120	zf-met	PF12874.7	1.5e-17	1	1
ENSSDUP00000013112	zf-met	PF12874.7	9.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000013353	-	1626	-	ENSSDUP00000013112	410 (aa)	-	-
ENSSDUT00000013361	-	4406	-	ENSSDUP00000013120	691 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000009534's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000009534's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000009534	-	86	58.371	ENSSDUG00000008943	-	100	59.062
ENSSDUG00000009534	-	92	58.036	ENSSDUG00000009553	-	95	58.036
ENSSDUG00000009534	-	91	54.545	ENSSDUG00000000838	-	91	54.545
ENSSDUG00000009534	-	85	58.996	ENSSDUG00000006426	-	99	59.176
ENSSDUG00000009534	-	67	34.409	ENSSDUG00000010305	-	57	45.283
ENSSDUG00000009534	-	90	45.802	ENSSDUG00000006740	-	93	45.802
ENSSDUG00000009534	-	71	43.038	ENSSDUG00000000905	-	57	43.038
ENSSDUG00000009534	-	62	41.026	ENSSDUG00000015931	si:dkey-89b17.4	90	30.798
ENSSDUG00000009534	-	66	38.261	ENSSDUG00000000871	-	95	38.261
ENSSDUG00000009534	-	57	34.862	ENSSDUG00000021415	si:ch211-216l23.1	96	30.303
ENSSDUG00000009534	-	92	56.125	ENSSDUG00000015182	-	92	59.945
ENSSDUG00000009534	-	76	52.273	ENSSDUG00000002195	-	94	44.737
ENSSDUG00000009534	-	66	33.585	ENSSDUG00000018835	PRDM15	50	36.726
ENSSDUG00000009534	-	81	51.111	ENSSDUG00000022162	-	85	51.111
ENSSDUG00000009534	-	74	53.552	ENSSDUG00000015159	-	99	53.552
ENSSDUG00000009534	-	63	40.152	ENSSDUG00000013215	-	51	40.764
ENSSDUG00000009534	-	86	88.235	ENSSDUG00000004867	-	94	88.235
ENSSDUG00000009534	-	85	88.889	ENSSDUG00000005401	-	98	88.889
ENSSDUG00000009534	-	69	36.658	ENSSDUG00000003003	znf319b	81	36.626
ENSSDUG00000009534	-	65	43.827	ENSSDUG00000012926	-	83	40.496
ENSSDUG00000009534	-	77	64.192	ENSSDUG00000009601	-	99	61.925
ENSSDUG00000009534	-	66	49.778	ENSSDUG00000020805	-	79	48.319
ENSSDUG00000009534	-	65	36.713	ENSSDUG00000020397	prdm5	84	42.424
ENSSDUG00000009534	-	93	79.518	ENSSDUG00000009577	-	96	79.518
ENSSDUG00000009534	-	67	40.756	ENSSDUG00000022701	znf652	58	42.342
ENSSDUG00000009534	-	67	39.091	ENSSDUG00000019933	snai1a	76	40.777
ENSSDUG00000009534	-	85	60.526	ENSSDUG00000009439	-	99	57.143
ENSSDUG00000009534	-	72	48.649	ENSSDUG00000011244	-	96	48.649
ENSSDUG00000009534	-	66	41.411	ENSSDUG00000022412	znf648	63	44.138
ENSSDUG00000009534	-	57	45.495	ENSSDUG00000016734	-	66	45.495
ENSSDUG00000009534	-	90	50.877	ENSSDUG00000022035	-	92	50.877
ENSSDUG00000009534	-	80	55.102	ENSSDUG00000005323	-	96	62.847
ENSSDUG00000009534	-	82	48.014	ENSSDUG00000004835	-	92	48.014
ENSSDUG00000009534	-	68	46.959	ENSSDUG00000004089	-	96	46.774
ENSSDUG00000009534	-	67	37.662	ENSSDUG00000002174	-	77	37.662
ENSSDUG00000009534	-	76	60.741	ENSSDUG00000015254	-	93	60.741
ENSSDUG00000009534	-	68	57.193	ENSSDUG00000015204	-	95	57.386
ENSSDUG00000009534	-	68	43.976	ENSSDUG00000022410	gfi1ab	54	43.976
ENSSDUG00000009534	-	66	64.362	ENSSDUG00000004650	-	99	64.362
ENSSDUG00000009534	-	72	41.958	ENSSDUG00000006463	-	88	43.983
ENSSDUG00000009534	-	66	30.952	ENSSDUG00000014540	znf341	51	30.952
ENSSDUG00000009534	-	67	31.153	ENSSDUG00000013280	-	51	30.398
ENSSDUG00000009534	-	63	39.552	ENSSDUG00000018060	snai2	58	39.552
ENSSDUG00000009534	-	69	54.676	ENSSDUG00000001263	-	99	54.676
ENSSDUG00000009534	-	66	39.314	ENSSDUG00000000705	-	82	35.411
ENSSDUG00000009534	-	67	50.000	ENSSDUG00000016450	-	72	40.000
ENSSDUG00000009534	-	87	53.261	ENSSDUG00000000786	-	98	52.113
ENSSDUG00000009534	-	68	35.897	ENSSDUG00000013048	-	69	35.714
ENSSDUG00000009534	-	77	54.952	ENSSDUG00000015191	-	99	54.952
ENSSDUG00000009534	-	74	46.012	ENSSDUG00000013904	-	97	44.141
ENSSDUG00000009534	-	64	38.129	ENSSDUG00000001637	scrt2	51	38.129
ENSSDUG00000009534	-	67	35.621	ENSSDUG00000004144	znf710b	52	37.129
ENSSDUG00000009534	-	62	54.717	ENSSDUG00000010584	sall3b	66	54.717
ENSSDUG00000009534	-	81	80.645	ENSSDUG00000000946	-	99	49.071
ENSSDUG00000009534	-	79	46.667	ENSSDUG00000020595	-	86	48.276
ENSSDUG00000009534	-	65	55.455	ENSSDUG00000023765	-	96	55.455
ENSSDUG00000009534	-	71	48.971	ENSSDUG00000023764	-	97	47.143
ENSSDUG00000009534	-	67	50.307	ENSSDUG00000006808	-	74	50.307
ENSSDUG00000009534	-	78	61.849	ENSSDUG00000007336	-	98	61.484
ENSSDUG00000009534	-	72	40.000	ENSSDUG00000004892	-	98	39.560
ENSSDUG00000009534	-	66	42.857	ENSSDUG00000002675	znf646	87	33.913
ENSSDUG00000009534	-	90	61.303	ENSSDUG00000009563	-	99	62.100
ENSSDUG00000009534	-	69	33.571	ENSSDUG00000001918	znf366	62	33.681
ENSSDUG00000009534	-	66	43.750	ENSSDUG00000002488	-	71	47.742
ENSSDUG00000009534	-	72	38.965	ENSSDUG00000019932	ZNF319	93	38.965
ENSSDUG00000009534	-	78	48.052	ENSSDUG00000020810	-	96	48.052
ENSSDUG00000009534	-	67	43.976	ENSSDUG00000011604	gfi1b	65	43.750
ENSSDUG00000009534	-	67	41.176	ENSSDUG00000000889	-	75	39.286
ENSSDUG00000009534	-	83	43.779	ENSSDUG00000020783	-	81	39.655
ENSSDUG00000009534	-	86	48.198	ENSSDUG00000020788	-	94	48.198
ENSSDUG00000009534	-	70	44.186	ENSSDUG00000011170	znf236	55	46.667
ENSSDUG00000009534	-	70	40.909	ENSSDUG00000007752	scrt1b	57	39.552
ENSSDUG00000009534	-	81	87.879	ENSSDUG00000008682	-	99	87.879
ENSSDUG00000009534	-	70	47.059	ENSSDUG00000022170	zbtb49	50	46.078
ENSSDUG00000009534	-	62	44.167	ENSSDUG00000014574	znf526	63	34.593
ENSSDUG00000009534	-	82	62.162	ENSSDUG00000015622	-	100	62.162
ENSSDUG00000009534	-	88	47.179	ENSSDUG00000015013	-	79	48.485
ENSSDUG00000009534	-	61	56.250	ENSSDUG00000000748	sall1b	64	38.202
ENSSDUG00000009534	-	71	38.673	ENSSDUG00000000695	-	74	43.750
ENSSDUG00000009534	-	65	48.485	ENSSDUG00000022914	-	55	48.485
ENSSDUG00000009534	-	65	36.879	ENSSDUG00000009223	zbtb41	60	34.872
ENSSDUG00000009534	-	63	34.459	ENSSDUG00000017250	-	63	39.623
ENSSDUG00000009534	-	83	60.976	ENSSDUG00000009421	-	99	62.454
ENSSDUG00000009534	-	87	47.826	ENSSDUG00000000799	-	90	47.826
ENSSDUG00000009534	-	86	47.059	ENSSDUG00000020774	-	83	47.525
ENSSDUG00000009534	-	87	56.140	ENSSDUG00000019911	-	93	50.847
ENSSDUG00000009534	-	93	59.627	ENSSDUG00000009425	-	94	59.627
ENSSDUG00000009534	-	93	40.157	ENSSDUG00000008329	-	88	49.541

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000009534	-	66	53.049	ENSAMXG00000000353	-	93	55.140	Astyanax_mexicanus
ENSSDUG00000009534	-	72	50.391	ENSAMXG00000034096	-	94	50.391	Astyanax_mexicanus
ENSSDUG00000009534	-	66	52.874	ENSAMXG00000029783	-	96	49.107	Astyanax_mexicanus
ENSSDUG00000009534	-	69	51.104	ENSAMXG00000044028	-	98	51.104	Astyanax_mexicanus
ENSSDUG00000009534	-	68	51.515	ENSAMXG00000043019	-	91	51.515	Astyanax_mexicanus
ENSSDUG00000009534	-	70	45.845	ENSBTAG00000014593	-	78	45.845	Bos_taurus
ENSSDUG00000009534	-	67	52.107	ENSBTAG00000040358	-	100	52.107	Bos_taurus
ENSSDUG00000009534	-	69	49.862	ENSCSAG00000000471	-	99	49.862	Chlorocebus_sabaeus
ENSSDUG00000009534	-	75	41.761	ENSCPBG00000009609	-	96	44.509	Chrysemys_picta_bellii
ENSSDUG00000009534	-	77	48.860	ENSCPBG00000002430	-	95	48.860	Chrysemys_picta_bellii
ENSSDUG00000009534	-	75	47.837	ENSDNOG00000042588	-	88	47.837	Dasypus_novemcinctus
ENSSDUG00000009534	-	58	41.429	ENSDNOG00000047529	-	69	41.429	Dasypus_novemcinctus
ENSSDUG00000009534	-	69	42.751	ENSEBUG00000016164	-	94	43.299	Eptatretus_burgeri
ENSSDUG00000009534	-	66	47.791	ENSEBUG00000013221	-	86	47.791	Eptatretus_burgeri
ENSSDUG00000009534	-	78	41.379	ENSEBUG00000016969	-	93	40.952	Eptatretus_burgeri
ENSSDUG00000009534	-	65	48.133	ENSELUG00000019008	-	86	48.230	Esox_lucius
ENSSDUG00000009534	-	67	52.982	ENSFCAG00000043966	-	99	52.982	Felis_catus
ENSSDUG00000009534	-	88	46.953	ENSGAFG00000013048	-	99	46.953	Gambusia_affinis
ENSSDUG00000009534	-	68	53.271	ENSGAFG00000021131	-	94	53.247	Gambusia_affinis
ENSSDUG00000009534	-	69	51.791	ENSGGOG00000042802	-	98	51.791	Gorilla_gorilla
ENSSDUG00000009534	-	76	51.724	ENSHCOG00000014713	-	98	51.724	Hippocampus_comes
ENSSDUG00000009534	-	76	48.684	ENSHCOG00000019512	-	96	48.684	Hippocampus_comes
ENSSDUG00000009534	-	69	50.857	ENSMFAG00000008648	-	99	50.857	Macaca_fascicularis
ENSSDUG00000009534	-	69	50.857	ENSMNEG00000001556	-	99	50.857	Macaca_nemestrina
ENSSDUG00000009534	-	69	50.578	ENSMLEG00000007035	-	99	50.578	Mandrillus_leucophaeus
ENSSDUG00000009534	-	67	45.921	ENSMAUG00000015263	-	63	51.131	Mesocricetus_auratus
ENSSDUG00000009534	-	67	46.638	ENSMOCG00000003394	-	71	51.584	Microtus_ochrogaster
ENSSDUG00000009534	-	68	44.476	ENSMODG00000028916	-	66	44.476	Monodelphis_domestica
ENSSDUG00000009534	-	71	49.714	ENSMPUG00000006562	-	67	49.714	Mustela_putorius_furo
ENSSDUG00000009534	-	86	53.939	ENSNBRG00000010194	-	99	52.941	Neolamprologus_brichardi
ENSSDUG00000009534	-	69	50.964	ENSNLEG00000018988	-	98	50.964	Nomascus_leucogenys
ENSSDUG00000009534	-	66	48.980	ENSMEUG00000012153	-	68	48.980	Notamacropus_eugenii
ENSSDUG00000009534	-	66	47.664	ENSMEUG00000006978	-	85	49.351	Notamacropus_eugenii
ENSSDUG00000009534	-	67	42.453	ENSOGAG00000024538	-	59	48.889	Otolemur_garnettii
ENSSDUG00000009534	-	69	52.679	ENSPPAG00000014496	-	98	51.791	Pan_paniscus
ENSSDUG00000009534	-	69	50.689	ENSPANG00000030207	-	99	50.689	Papio_anubis
ENSSDUG00000009534	-	66	47.569	ENSPSIG00000009650	-	82	46.288	Pelodiscus_sinensis
ENSSDUG00000009534	-	66	53.388	ENSPSIG00000010405	-	99	53.388	Pelodiscus_sinensis
ENSSDUG00000009534	-	79	40.840	ENSPSIG00000002565	-	55	40.840	Pelodiscus_sinensis
ENSSDUG00000009534	-	73	51.131	ENSPEMG00000010242	-	74	51.131	Peromyscus_maniculatus_bairdii
ENSSDUG00000009534	-	76	53.061	ENSPLAG00000021062	-	98	53.061	Poecilia_latipinna
ENSSDUG00000009534	-	85	45.740	ENSPLAG00000020710	-	99	46.392	Poecilia_latipinna
ENSSDUG00000009534	-	87	49.425	ENSPLAG00000010389	-	95	47.449	Poecilia_latipinna
ENSSDUG00000009534	-	67	49.326	ENSPCAG00000009106	-	81	50.644	Procavia_capensis
ENSSDUG00000009534	-	67	38.519	ENSPNYG00000024243	-	92	43.781	Pundamilia_nyererei
ENSSDUG00000009534	-	66	48.817	ENSPNAG00000018644	-	92	51.142	Pygocentrus_nattereri
ENSSDUG00000009534	-	74	51.598	ENSSHAG00000001415	-	89	51.598	Sarcophilus_harrisii
ENSSDUG00000009534	-	87	95.547	ENSSLDG00000013760	-	95	97.744	Seriola_lalandi_dorsalis
ENSSDUG00000009534	-	66	50.000	ENSSPUG00000007147	-	91	50.000	Sphenodon_punctatus
ENSSDUG00000009534	-	86	51.190	ENSTRUG00000006896	-	96	51.293	Takifugu_rubripes
ENSSDUG00000009534	-	68	52.915	ENSVPAG00000011867	-	90	49.014	Vicugna_pacos
ENSSDUG00000009534	-	83	39.037	ENSXCOG00000009794	-	92	39.037	Xiphophorus_couchianus