EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000009588 (Gene tree)
Gene ID: 111216781
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 4151 bases
Position: chrBDQW01000002.1:6915689-6919839
Accession: 111216781
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000013196	LSM	PF01423.22	1.3e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000013437	-	1529	XM_022738401	ENSSDUP00000013196	167 (aa)	XP_022594122	UPI000BBE9E73

Gene Model

Click here to download ENSSDUG00000009588's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03018	RNA degradation	KEGG
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000009588's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000009588	lsm4	53	98.864	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSSDUG00000009588	lsm4	100	89.222	ENSAPOG00000005643	lsm4	100	89.222	Acanthochromis_polyacanthus
ENSSDUG00000009588	lsm4	52	98.851	ENSAMEG00000011162	LSM4	67	96.939	Ailuropoda_melanoleuca
ENSSDUG00000009588	lsm4	100	87.425	ENSAOCG00000006414	lsm4	100	87.425	Amphiprion_ocellaris
ENSSDUG00000009588	lsm4	100	88.024	ENSAPEG00000006238	lsm4	100	88.024	Amphiprion_percula
ENSSDUG00000009588	lsm4	100	88.024	ENSATEG00000016559	lsm4	100	88.024	Anabas_testudineus
ENSSDUG00000009588	lsm4	53	98.864	ENSANAG00000034659	LSM4	71	96.970	Aotus_nancymaae
ENSSDUG00000009588	lsm4	100	85.629	ENSACLG00000022738	lsm4	100	85.629	Astatotilapia_calliptera
ENSSDUG00000009588	lsm4	100	74.405	ENSAMXG00000016932	lsm4	100	77.381	Astyanax_mexicanus
ENSSDUG00000009588	lsm4	53	98.864	ENSBTAG00000008578	LSM4	71	96.970	Bos_taurus
ENSSDUG00000009588	lsm4	50	75.904	WBGene00003078	lsm-4	83	66.667	Caenorhabditis_elegans
ENSSDUG00000009588	lsm4	53	98.864	ENSCJAG00000014171	LSM4	71	96.970	Callithrix_jacchus
ENSSDUG00000009588	lsm4	53	98.864	ENSCAFG00000014900	LSM4	65	96.970	Canis_familiaris
ENSSDUG00000009588	lsm4	53	98.864	ENSCAFG00020012137	LSM4	71	96.970	Canis_lupus_dingo
ENSSDUG00000009588	lsm4	52	98.851	ENSCHIG00000010928	LSM4	65	96.939	Capra_hircus
ENSSDUG00000009588	lsm4	53	97.727	ENSTSYG00000030906	LSM4	71	95.960	Carlito_syrichta
ENSSDUG00000009588	lsm4	53	97.727	ENSCAPG00000014140	LSM4	71	95.960	Cavia_aperea
ENSSDUG00000009588	lsm4	53	97.727	ENSCPOG00000024117	LSM4	71	95.960	Cavia_porcellus
ENSSDUG00000009588	lsm4	53	98.864	ENSCCAG00000036308	LSM4	71	96.970	Cebus_capucinus
ENSSDUG00000009588	lsm4	94	67.857	ENSCATG00000029311	LSM4	97	74.627	Cercocebus_atys
ENSSDUG00000009588	lsm4	53	98.864	ENSCLAG00000010828	LSM4	71	96.970	Chinchilla_lanigera
ENSSDUG00000009588	lsm4	53	98.864	ENSCSAG00000005370	LSM4	71	96.970	Chlorocebus_sabaeus
ENSSDUG00000009588	lsm4	53	100.000	ENSCPBG00000012925	LSM4	72	97.980	Chrysemys_picta_bellii
ENSSDUG00000009588	lsm4	51	93.023	ENSCING00000007519	-	76	87.629	Ciona_intestinalis
ENSSDUG00000009588	lsm4	51	93.023	ENSCSAVG00000008596	-	78	87.629	Ciona_savignyi
ENSSDUG00000009588	lsm4	53	98.864	ENSCANG00000043686	LSM4	97	72.464	Colobus_angolensis_palliatus
ENSSDUG00000009588	lsm4	53	95.455	ENSCGRG00001014436	Lsm4	71	93.939	Cricetulus_griseus_chok1gshd
ENSSDUG00000009588	lsm4	52	95.402	ENSCGRG00000009398	Lsm4	71	93.878	Cricetulus_griseus_crigri
ENSSDUG00000009588	lsm4	100	69.461	ENSCSEG00000016127	lsm4	100	82.036	Cynoglossus_semilaevis
ENSSDUG00000009588	lsm4	91	79.605	ENSCVAG00000021828	lsm4	98	79.605	Cyprinodon_variegatus
ENSSDUG00000009588	lsm4	100	81.437	ENSCVAG00000010601	lsm4	100	81.437	Cyprinodon_variegatus
ENSSDUG00000009588	lsm4	59	97.980	ENSDARG00000023852	lsm4	69	97.980	Danio_rerio
ENSSDUG00000009588	lsm4	53	97.727	ENSDORG00000024225	Lsm4	71	95.960	Dipodomys_ordii
ENSSDUG00000009588	lsm4	60	81.000	FBgn0032240	CG17768	63	81.443	Drosophila_melanogaster
ENSSDUG00000009588	lsm4	78	91.538	ENSELUG00000012821	lsm4	93	93.496	Esox_lucius
ENSSDUG00000009588	lsm4	53	98.864	ENSFCAG00000040580	LSM4	71	96.970	Felis_catus
ENSSDUG00000009588	lsm4	52	100.000	ENSFALG00000009478	LSM4	71	97.959	Ficedula_albicollis
ENSSDUG00000009588	lsm4	52	98.851	ENSFDAG00000010124	LSM4	71	96.939	Fukomys_damarensis
ENSSDUG00000009588	lsm4	99	66.467	ENSGMOG00000007729	lsm4	99	70.659	Gadus_morhua
ENSSDUG00000009588	lsm4	53	100.000	ENSGALG00000003385	LSM4	72	97.980	Gallus_gallus
ENSSDUG00000009588	lsm4	100	80.240	ENSGAFG00000004903	lsm4	97	76.974	Gambusia_affinis
ENSSDUG00000009588	lsm4	100	79.882	ENSGACG00000008140	lsm4	100	80.473	Gasterosteus_aculeatus
ENSSDUG00000009588	lsm4	53	100.000	ENSGAGG00000017812	LSM4	72	97.980	Gopherus_agassizii
ENSSDUG00000009588	lsm4	53	98.864	ENSGGOG00000012914	-	97	74.627	Gorilla_gorilla
ENSSDUG00000009588	lsm4	100	85.030	ENSHBUG00000008858	lsm4	80	85.030	Haplochromis_burtoni
ENSSDUG00000009588	lsm4	82	76.259	ENSHGLG00000006568	LSM4	71	96.970	Heterocephalus_glaber_female
ENSSDUG00000009588	lsm4	55	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSSDUG00000009588	lsm4	100	82.635	ENSHCOG00000008819	lsm4	100	82.635	Hippocampus_comes
ENSSDUG00000009588	lsm4	100	74.405	ENSIPUG00000005368	Lsm4	100	77.381	Ictalurus_punctatus
ENSSDUG00000009588	lsm4	53	98.864	ENSSTOG00000016494	LSM4	71	96.970	Ictidomys_tridecemlineatus
ENSSDUG00000009588	lsm4	53	96.591	ENSJJAG00000017420	Lsm4	71	94.949	Jaculus_jaculus
ENSSDUG00000009588	lsm4	100	79.641	ENSKMAG00000005073	lsm4	100	82.036	Kryptolebias_marmoratus
ENSSDUG00000009588	lsm4	100	88.623	ENSLBEG00000027930	lsm4	100	88.623	Labrus_bergylta
ENSSDUG00000009588	lsm4	53	100.000	ENSLACG00000015861	LSM4	71	97.980	Latimeria_chalumnae
ENSSDUG00000009588	lsm4	60	97.030	ENSLOCG00000002025	lsm4	100	74.405	Lepisosteus_oculatus
ENSSDUG00000009588	lsm4	52	97.701	ENSLAFG00000017459	LSM4	71	95.918	Loxodonta_africana
ENSSDUG00000009588	lsm4	53	98.864	ENSMFAG00000031194	LSM4	97	72.464	Macaca_fascicularis
ENSSDUG00000009588	lsm4	53	98.864	ENSMMUG00000004405	LSM4	71	96.970	Macaca_mulatta
ENSSDUG00000009588	lsm4	62	94.231	ENSMNEG00000042899	LSM4	97	72.464	Macaca_nemestrina
ENSSDUG00000009588	lsm4	94	67.857	ENSMLEG00000027948	LSM4	97	74.627	Mandrillus_leucophaeus
ENSSDUG00000009588	lsm4	100	83.234	ENSMAMG00000006190	lsm4	100	83.234	Mastacembelus_armatus
ENSSDUG00000009588	lsm4	100	85.030	ENSMZEG00005016420	lsm4	100	85.030	Maylandia_zebra
ENSSDUG00000009588	lsm4	81	76.087	ENSMGAG00000004976	LSM4	71	97.959	Meleagris_gallopavo
ENSSDUG00000009588	lsm4	59	95.960	ENSMICG00000000222	LSM4	71	95.960	Microcebus_murinus
ENSSDUG00000009588	lsm4	53	95.455	ENSMOCG00000020861	Lsm4	71	93.939	Microtus_ochrogaster
ENSSDUG00000009588	lsm4	100	82.635	ENSMALG00000018159	lsm4	100	82.635	Monopterus_albus
ENSSDUG00000009588	lsm4	53	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	71	93.939	Mus_caroli
ENSSDUG00000009588	lsm4	53	95.455	ENSMUSG00000031848	Lsm4	96	87.879	Mus_musculus
ENSSDUG00000009588	lsm4	53	95.455	MGP_PahariEiJ_G0021623	Lsm4	71	93.939	Mus_pahari
ENSSDUG00000009588	lsm4	53	95.455	MGP_SPRETEiJ_G0032276	Lsm4	71	93.939	Mus_spretus
ENSSDUG00000009588	lsm4	53	98.864	ENSMPUG00000015589	LSM4	71	96.970	Mustela_putorius_furo
ENSSDUG00000009588	lsm4	52	98.851	ENSMLUG00000004010	LSM4	71	96.939	Myotis_lucifugus
ENSSDUG00000009588	lsm4	53	95.455	ENSNGAG00000008644	Lsm4	71	93.939	Nannospalax_galili
ENSSDUG00000009588	lsm4	65	98.148	ENSNBRG00000022150	lsm4	67	98.148	Neolamprologus_brichardi
ENSSDUG00000009588	lsm4	53	88.636	ENSODEG00000004519	-	72	86.869	Octodon_degus
ENSSDUG00000009588	lsm4	53	98.864	ENSODEG00000020549	-	71	96.970	Octodon_degus
ENSSDUG00000009588	lsm4	82	60.432	ENSODEG00000011712	-	70	60.215	Octodon_degus
ENSSDUG00000009588	lsm4	100	85.629	ENSONIG00000012724	lsm4	100	85.629	Oreochromis_niloticus
ENSSDUG00000009588	lsm4	52	94.505	ENSOANG00000007434	LSM4	88	93.137	Ornithorhynchus_anatinus
ENSSDUG00000009588	lsm4	100	81.437	ENSORLG00000008391	lsm4	100	81.437	Oryzias_latipes
ENSSDUG00000009588	lsm4	100	82.036	ENSORLG00020014829	lsm4	100	82.036	Oryzias_latipes_hni
ENSSDUG00000009588	lsm4	100	81.437	ENSORLG00015010205	lsm4	100	81.437	Oryzias_latipes_hsok
ENSSDUG00000009588	lsm4	100	80.240	ENSOMEG00000003606	lsm4	100	80.240	Oryzias_melastigma
ENSSDUG00000009588	lsm4	59	95.918	ENSOGAG00000027992	LSM4	67	95.918	Otolemur_garnettii
ENSSDUG00000009588	lsm4	52	98.851	ENSOARG00000012553	LSM4	68	96.939	Ovis_aries
ENSSDUG00000009588	lsm4	53	98.864	ENSPPAG00000044045	-	71	96.970	Pan_paniscus
ENSSDUG00000009588	lsm4	53	98.864	ENSPPRG00000018264	LSM4	71	96.970	Panthera_pardus
ENSSDUG00000009588	lsm4	52	98.851	ENSPTIG00000006306	LSM4	71	96.939	Panthera_tigris_altaica
ENSSDUG00000009588	lsm4	65	94.545	ENSPTRG00000031470	LSM4	71	96.970	Pan_troglodytes
ENSSDUG00000009588	lsm4	65	94.495	ENSPANG00000014399	LSM4	97	74.627	Papio_anubis
ENSSDUG00000009588	lsm4	100	77.381	ENSPKIG00000006154	lsm4	100	77.381	Paramormyrops_kingsleyae
ENSSDUG00000009588	lsm4	52	100.000	ENSPSIG00000012358	LSM4	72	97.959	Pelodiscus_sinensis
ENSSDUG00000009588	lsm4	53	95.455	ENSPEMG00000001358	Lsm4	71	93.939	Peromyscus_maniculatus_bairdii
ENSSDUG00000009588	lsm4	100	80.240	ENSPFOG00000000570	lsm4	76	80.240	Poecilia_formosa
ENSSDUG00000009588	lsm4	100	80.240	ENSPLAG00000016267	lsm4	100	80.240	Poecilia_latipinna
ENSSDUG00000009588	lsm4	100	80.240	ENSPMEG00000016378	lsm4	100	80.240	Poecilia_mexicana
ENSSDUG00000009588	lsm4	100	80.838	ENSPREG00000011290	lsm4	76	80.838	Poecilia_reticulata
ENSSDUG00000009588	lsm4	53	98.864	ENSPPYG00000009736	LSM4	71	96.970	Pongo_abelii
ENSSDUG00000009588	lsm4	59	95.960	ENSPCOG00000019837	LSM4	71	95.960	Propithecus_coquereli
ENSSDUG00000009588	lsm4	53	98.864	ENSPVAG00000015383	LSM4	71	96.970	Pteropus_vampyrus
ENSSDUG00000009588	lsm4	100	85.030	ENSPNYG00000016794	lsm4	100	85.030	Pundamilia_nyererei
ENSSDUG00000009588	lsm4	96	78.750	ENSPNAG00000016598	lsm4	100	78.750	Pygocentrus_nattereri
ENSSDUG00000009588	lsm4	53	95.455	ENSRNOG00000019572	Lsm4	71	93.939	Rattus_norvegicus
ENSSDUG00000009588	lsm4	53	98.864	ENSRBIG00000024717	LSM4	97	73.913	Rhinopithecus_bieti
ENSSDUG00000009588	lsm4	94	67.262	ENSRROG00000045706	LSM4	97	73.913	Rhinopithecus_roxellana
ENSSDUG00000009588	lsm4	50	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSSDUG00000009588	lsm4	53	100.000	ENSSHAG00000011559	LSM4	71	97.980	Sarcophilus_harrisii
ENSSDUG00000009588	lsm4	100	77.381	ENSSFOG00015021067	lsm4	100	77.381	Scleropages_formosus
ENSSDUG00000009588	lsm4	100	77.246	ENSSMAG00000021020	lsm4	100	82.143	Scophthalmus_maximus
ENSSDUG00000009588	lsm4	100	99.405	ENSSLDG00000006827	lsm4	100	99.405	Seriola_lalandi_dorsalis
ENSSDUG00000009588	lsm4	52	100.000	ENSSPUG00000010166	LSM4	63	97.959	Sphenodon_punctatus
ENSSDUG00000009588	lsm4	100	88.623	ENSSPAG00000011615	lsm4	100	88.623	Stegastes_partitus
ENSSDUG00000009588	lsm4	53	98.864	ENSSSCG00000034314	LSM4	71	96.970	Sus_scrofa
ENSSDUG00000009588	lsm4	100	81.437	ENSTRUG00000021737	lsm4	100	81.437	Takifugu_rubripes
ENSSDUG00000009588	lsm4	100	80.952	ENSTNIG00000010191	lsm4	100	76.786	Tetraodon_nigroviridis
ENSSDUG00000009588	lsm4	65	94.545	ENSUAMG00000000665	LSM4	91	94.545	Ursus_americanus
ENSSDUG00000009588	lsm4	53	98.864	ENSUMAG00000009013	LSM4	71	96.970	Ursus_maritimus
ENSSDUG00000009588	lsm4	52	98.851	ENSVVUG00000008136	LSM4	50	96.939	Vulpes_vulpes
ENSSDUG00000009588	lsm4	59	96.939	ENSXETG00000024933	lsm4	71	96.939	Xenopus_tropicalis
ENSSDUG00000009588	lsm4	100	79.641	ENSXMAG00000026672	lsm4	76	79.641	Xiphophorus_maculatus