EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000009629 (Gene tree)
Gene ID: 111216888
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: regulator of nonsense transcripts 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 16177 bases
Position: chrBDQW01000002.1:6930510-6946686
Accession: 111216888
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000013281	UPF1_Zn_bind	PF09416.10	9.8e-75	1	1
ENSSDUP00000013281	ResIII	PF04851.15	3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000013523	-	6646	XM_022738571	ENSSDUP00000013281	1102 (aa)	XP_022594292	UPI000BBE6F38

Gene Model

Click here to download ENSSDUG00000009629's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000009629's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000009629	-	100	92.046	ENSSDUG00000013320	upf1	100	92.761

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000009629	-	100	92.602	ENSG00000005007	UPF1	100	92.602	Homo_sapiens
ENSSDUG00000009629	-	100	93.315	ENSAPOG00000023773	upf1	100	93.315	Acanthochromis_polyacanthus
ENSSDUG00000009629	-	100	99.637	ENSAPOG00000010916	-	100	99.637	Acanthochromis_polyacanthus
ENSSDUG00000009629	-	100	92.280	ENSAMEG00000011474	UPF1	100	92.280	Ailuropoda_melanoleuca
ENSSDUG00000009629	-	100	93.376	ENSACIG00000019949	upf1	100	93.376	Amphilophus_citrinellus
ENSSDUG00000009629	-	93	98.444	ENSACIG00000010985	-	100	98.444	Amphilophus_citrinellus
ENSSDUG00000009629	-	100	92.831	ENSAOCG00000018519	upf1	100	93.286	Amphiprion_ocellaris
ENSSDUG00000009629	-	100	99.456	ENSAOCG00000006352	-	100	99.456	Amphiprion_ocellaris
ENSSDUG00000009629	-	100	92.831	ENSAPEG00000016344	upf1	100	93.286	Amphiprion_percula
ENSSDUG00000009629	-	100	99.365	ENSAPEG00000006292	-	100	99.365	Amphiprion_percula
ENSSDUG00000009629	-	100	99.546	ENSATEG00000016606	-	100	99.546	Anabas_testudineus
ENSSDUG00000009629	-	100	91.378	ENSATEG00000017867	upf1	100	92.404	Anabas_testudineus
ENSSDUG00000009629	-	95	94.413	ENSAPLG00000009175	UPF1	100	94.318	Anas_platyrhynchos
ENSSDUG00000009629	-	95	92.783	ENSANAG00000024107	UPF1	95	92.688	Aotus_nancymaae
ENSSDUG00000009629	-	100	99.002	ENSACLG00000022630	-	100	99.002	Astatotilapia_calliptera
ENSSDUG00000009629	-	100	93.285	ENSACLG00000007181	upf1	100	93.285	Astatotilapia_calliptera
ENSSDUG00000009629	-	100	95.104	ENSAMXG00000042187	upf1	100	95.286	Astyanax_mexicanus
ENSSDUG00000009629	-	100	92.294	ENSBTAG00000020922	UPF1	100	92.294	Bos_taurus
ENSSDUG00000009629	-	97	49.401	WBGene00004880	smg-2	99	49.309	Caenorhabditis_elegans
ENSSDUG00000009629	-	100	91.873	ENSCJAG00000019627	UPF1	100	91.873	Callithrix_jacchus
ENSSDUG00000009629	-	100	92.049	ENSCAFG00000014578	UPF1	100	92.049	Canis_familiaris
ENSSDUG00000009629	-	100	92.781	ENSCAFG00020012347	UPF1	100	92.781	Canis_lupus_dingo
ENSSDUG00000009629	-	100	93.029	ENSCHIG00000011018	UPF1	100	93.029	Capra_hircus
ENSSDUG00000009629	-	95	93.922	ENSTSYG00000008877	UPF1	98	93.827	Carlito_syrichta
ENSSDUG00000009629	-	96	93.146	ENSCAPG00000005758	UPF1	95	93.732	Cavia_aperea
ENSSDUG00000009629	-	100	92.992	ENSCPOG00000025463	UPF1	100	92.902	Cavia_porcellus
ENSSDUG00000009629	-	100	92.602	ENSCCAG00000032175	UPF1	100	92.602	Cebus_capucinus
ENSSDUG00000009629	-	94	94.370	ENSCATG00000040306	UPF1	97	94.275	Cercocebus_atys
ENSSDUG00000009629	-	95	94.112	ENSCLAG00000004037	UPF1	99	94.017	Chinchilla_lanigera
ENSSDUG00000009629	-	100	92.602	ENSCSAG00000005276	UPF1	100	92.602	Chlorocebus_sabaeus
ENSSDUG00000009629	-	100	92.921	ENSCPBG00000012513	UPF1	100	92.832	Chrysemys_picta_bellii
ENSSDUG00000009629	-	77	79.415	ENSCING00000021399	-	99	78.454	Ciona_intestinalis
ENSSDUG00000009629	-	99	73.070	ENSCSAVG00000006533	-	99	73.339	Ciona_savignyi
ENSSDUG00000009629	-	95	94.112	ENSCANG00000029819	UPF1	97	94.017	Colobus_angolensis_palliatus
ENSSDUG00000009629	-	100	92.569	ENSCGRG00001021067	Upf1	100	92.569	Cricetulus_griseus_chok1gshd
ENSSDUG00000009629	-	95	93.637	ENSCGRG00000013480	Upf1	98	93.542	Cricetulus_griseus_crigri
ENSSDUG00000009629	-	100	88.134	ENSCSEG00000017239	upf1	100	87.895	Cynoglossus_semilaevis
ENSSDUG00000009629	-	100	98.457	ENSCSEG00000016159	-	100	98.457	Cynoglossus_semilaevis
ENSSDUG00000009629	-	100	98.367	ENSCVAG00000010561	upf1	100	98.367	Cyprinodon_variegatus
ENSSDUG00000009629	-	100	94.470	ENSDARG00000016302	upf1	100	94.742	Danio_rerio
ENSSDUG00000009629	-	95	91.643	ENSDORG00000009984	Upf1	95	91.548	Dipodomys_ordii
ENSSDUG00000009629	-	86	71.459	FBgn0030354	Upf1	81	71.088	Drosophila_melanogaster
ENSSDUG00000009629	-	54	86.469	ENSEBUG00000010069	upf1	96	86.799	Eptatretus_burgeri
ENSSDUG00000009629	-	100	92.940	ENSEASG00005006549	UPF1	100	92.940	Equus_asinus_asinus
ENSSDUG00000009629	-	100	92.940	ENSECAG00000010639	UPF1	100	92.940	Equus_caballus
ENSSDUG00000009629	-	100	95.582	ENSELUG00000012916	-	100	95.582	Esox_lucius
ENSSDUG00000009629	-	100	92.780	ENSELUG00000020917	upf1	100	92.329	Esox_lucius
ENSSDUG00000009629	-	100	91.961	ENSFCAG00000009757	UPF1	100	91.961	Felis_catus
ENSSDUG00000009629	-	95	94.667	ENSFALG00000009312	UPF1	96	94.571	Ficedula_albicollis
ENSSDUG00000009629	-	95	94.017	ENSFDAG00000014816	UPF1	99	93.922	Fukomys_damarensis
ENSSDUG00000009629	-	100	89.624	ENSFHEG00000006428	upf1	100	89.187	Fundulus_heteroclitus
ENSSDUG00000009629	-	86	99.093	ENSFHEG00000016276	-	96	99.093	Fundulus_heteroclitus
ENSSDUG00000009629	-	100	95.328	ENSGMOG00000007541	upf1	100	95.328	Gadus_morhua
ENSSDUG00000009629	-	100	92.857	ENSGALG00000003220	UPF1	100	92.768	Gallus_gallus
ENSSDUG00000009629	-	64	92.707	ENSGAFG00000015443	-	88	92.201	Gambusia_affinis
ENSSDUG00000009629	-	100	98.094	ENSGAFG00000004831	upf1	100	98.094	Gambusia_affinis
ENSSDUG00000009629	-	100	93.429	ENSGAGG00000022217	UPF1	100	93.429	Gopherus_agassizii
ENSSDUG00000009629	-	95	94.919	ENSGGOG00000002608	UPF1	99	94.823	Gorilla_gorilla
ENSSDUG00000009629	-	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSSDUG00000009629	-	86	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSSDUG00000009629	-	100	91.608	ENSHGLG00000010900	UPF1	100	91.608	Heterocephalus_glaber_female
ENSSDUG00000009629	-	95	92.308	ENSHGLG00100005904	UPF1	96	92.213	Heterocephalus_glaber_male
ENSSDUG00000009629	-	100	98.277	ENSHCOG00000008918	upf1	100	98.277	Hippocampus_comes
ENSSDUG00000009629	-	100	95.104	ENSIPUG00000005108	UPF1	100	95.286	Ictalurus_punctatus
ENSSDUG00000009629	-	100	92.602	ENSSTOG00000009196	UPF1	100	92.602	Ictidomys_tridecemlineatus
ENSSDUG00000009629	-	100	91.644	ENSJJAG00000023151	Upf1	100	91.644	Jaculus_jaculus
ENSSDUG00000009629	-	100	98.820	ENSKMAG00000004962	upf1	100	98.820	Kryptolebias_marmoratus
ENSSDUG00000009629	-	100	98.911	ENSLBEG00000027848	-	100	98.911	Labrus_bergylta
ENSSDUG00000009629	-	100	91.674	ENSLBEG00000014862	upf1	100	92.301	Labrus_bergylta
ENSSDUG00000009629	-	63	94.842	ENSLACG00000008482	UPF1	100	94.842	Latimeria_chalumnae
ENSSDUG00000009629	-	100	96.007	ENSLOCG00000002072	upf1	100	96.007	Lepisosteus_oculatus
ENSSDUG00000009629	-	100	91.593	ENSLAFG00000014963	UPF1	100	91.593	Loxodonta_africana
ENSSDUG00000009629	-	100	92.527	ENSMFAG00000037748	UPF1	100	92.527	Macaca_fascicularis
ENSSDUG00000009629	-	100	92.280	ENSMMUG00000023286	UPF1	100	92.280	Macaca_mulatta
ENSSDUG00000009629	-	100	92.527	ENSMNEG00000000046	UPF1	100	92.527	Macaca_nemestrina
ENSSDUG00000009629	-	95	94.112	ENSMLEG00000028404	UPF1	99	94.017	Mandrillus_leucophaeus
ENSSDUG00000009629	-	100	99.365	ENSMAMG00000006231	-	100	99.365	Mastacembelus_armatus
ENSSDUG00000009629	-	100	92.225	ENSMAMG00000006229	upf1	100	92.851	Mastacembelus_armatus
ENSSDUG00000009629	-	100	99.002	ENSMZEG00005016386	-	100	99.002	Maylandia_zebra
ENSSDUG00000009629	-	100	92.280	ENSMZEG00005003489	upf1	100	92.549	Maylandia_zebra
ENSSDUG00000009629	-	95	93.928	ENSMGAG00000004745	UPF1	100	93.833	Meleagris_gallopavo
ENSSDUG00000009629	-	95	93.637	ENSMAUG00000011398	Upf1	95	93.542	Mesocricetus_auratus
ENSSDUG00000009629	-	100	92.513	ENSMICG00000001659	UPF1	100	92.513	Microcebus_murinus
ENSSDUG00000009629	-	100	91.837	ENSMOCG00000005699	Upf1	100	91.925	Microtus_ochrogaster
ENSSDUG00000009629	-	95	96.750	ENSMMOG00000007537	-	99	96.750	Mola_mola
ENSSDUG00000009629	-	100	92.377	ENSMMOG00000007881	upf1	100	92.838	Mola_mola
ENSSDUG00000009629	-	100	91.718	ENSMODG00000003689	UPF1	100	91.806	Monodelphis_domestica
ENSSDUG00000009629	-	100	92.468	ENSMALG00000000144	upf1	100	92.398	Monopterus_albus
ENSSDUG00000009629	-	100	97.468	ENSMALG00000018100	-	100	97.468	Monopterus_albus
ENSSDUG00000009629	-	100	92.480	MGP_CAROLIEiJ_G0031142	Upf1	100	92.480	Mus_caroli
ENSSDUG00000009629	-	100	92.480	ENSMUSG00000058301	Upf1	100	92.480	Mus_musculus
ENSSDUG00000009629	-	100	92.480	MGP_PahariEiJ_G0021607	Upf1	100	92.480	Mus_pahari
ENSSDUG00000009629	-	100	92.480	MGP_SPRETEiJ_G0032260	Upf1	100	92.480	Mus_spretus
ENSSDUG00000009629	-	100	92.781	ENSMPUG00000015516	UPF1	100	92.781	Mustela_putorius_furo
ENSSDUG00000009629	-	99	92.576	ENSMLUG00000012122	UPF1	99	92.576	Myotis_lucifugus
ENSSDUG00000009629	-	100	91.327	ENSNGAG00000024107	Upf1	100	91.327	Nannospalax_galili
ENSSDUG00000009629	-	100	95.363	ENSNBRG00000022069	-	100	97.672	Neolamprologus_brichardi
ENSSDUG00000009629	-	100	91.470	ENSNBRG00000000670	upf1	100	91.470	Neolamprologus_brichardi
ENSSDUG00000009629	-	95	88.319	ENSNLEG00000006062	UPF1	99	88.224	Nomascus_leucogenys
ENSSDUG00000009629	-	83	89.062	ENSMEUG00000014146	-	83	88.867	Notamacropus_eugenii
ENSSDUG00000009629	-	95	87.824	ENSOPRG00000014018	UPF1	99	87.728	Ochotona_princeps
ENSSDUG00000009629	-	100	92.986	ENSODEG00000012426	UPF1	100	92.896	Octodon_degus
ENSSDUG00000009629	-	100	99.093	ENSONIG00000012729	-	100	99.093	Oreochromis_niloticus
ENSSDUG00000009629	-	100	92.460	ENSONIG00000010452	upf1	100	92.729	Oreochromis_niloticus
ENSSDUG00000009629	-	100	91.947	ENSOANG00000004568	UPF1	100	91.593	Ornithorhynchus_anatinus
ENSSDUG00000009629	-	100	98.004	ENSORLG00000008453	upf1	100	98.004	Oryzias_latipes
ENSSDUG00000009629	-	100	97.915	ENSORLG00020014758	upf1	100	97.915	Oryzias_latipes_hni
ENSSDUG00000009629	-	100	97.915	ENSORLG00015010165	upf1	100	97.915	Oryzias_latipes_hsok
ENSSDUG00000009629	-	100	98.276	ENSOMEG00000003665	upf1	100	98.276	Oryzias_melastigma
ENSSDUG00000009629	-	100	92.692	ENSOGAG00000012866	UPF1	100	92.692	Otolemur_garnettii
ENSSDUG00000009629	-	96	91.268	ENSOARG00000010739	UPF1	100	91.176	Ovis_aries
ENSSDUG00000009629	-	95	94.112	ENSPPAG00000043884	UPF1	96	94.017	Pan_paniscus
ENSSDUG00000009629	-	100	91.961	ENSPPRG00000023470	UPF1	100	91.961	Panthera_pardus
ENSSDUG00000009629	-	95	92.919	ENSPTIG00000010159	UPF1	99	92.823	Panthera_tigris_altaica
ENSSDUG00000009629	-	100	92.527	ENSPTRG00000010721	UPF1	100	92.527	Pan_troglodytes
ENSSDUG00000009629	-	100	92.527	ENSPANG00000008847	UPF1	100	92.527	Papio_anubis
ENSSDUG00000009629	-	91	95.437	ENSPKIG00000006069	upf1	95	96.375	Paramormyrops_kingsleyae
ENSSDUG00000009629	-	70	93.872	ENSPSIG00000009491	UPF1	100	93.742	Pelodiscus_sinensis
ENSSDUG00000009629	-	100	91.410	ENSPMGG00000017327	upf1	100	91.501	Periophthalmus_magnuspinnatus
ENSSDUG00000009629	-	100	91.837	ENSPEMG00000001085	Upf1	100	91.837	Peromyscus_maniculatus_bairdii
ENSSDUG00000009629	-	100	87.838	ENSPMAG00000001206	upf1	100	87.387	Petromyzon_marinus
ENSSDUG00000009629	-	100	92.953	ENSPCIG00000006156	UPF1	100	92.953	Phascolarctos_cinereus
ENSSDUG00000009629	-	100	91.367	ENSPLAG00000018155	-	100	90.917	Poecilia_latipinna
ENSSDUG00000009629	-	100	98.185	ENSPLAG00000016232	-	100	98.185	Poecilia_latipinna
ENSSDUG00000009629	-	100	98.276	ENSPMEG00000016319	-	100	98.276	Poecilia_mexicana
ENSSDUG00000009629	-	100	91.938	ENSPMEG00000011443	-	100	91.470	Poecilia_mexicana
ENSSDUG00000009629	-	100	91.741	ENSPREG00000009940	upf1	100	91.203	Poecilia_reticulata
ENSSDUG00000009629	-	100	97.913	ENSPREG00000011247	-	100	97.913	Poecilia_reticulata
ENSSDUG00000009629	-	100	87.014	ENSPPYG00000009752	UPF1	100	86.837	Pongo_abelii
ENSSDUG00000009629	-	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSSDUG00000009629	-	100	92.451	ENSPCOG00000023813	UPF1	100	92.451	Propithecus_coquereli
ENSSDUG00000009629	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSSDUG00000009629	-	100	92.280	ENSPNYG00000003694	upf1	100	92.549	Pundamilia_nyererei
ENSSDUG00000009629	-	100	99.093	ENSPNYG00000016731	-	100	99.093	Pundamilia_nyererei
ENSSDUG00000009629	-	100	94.651	ENSPNAG00000025614	upf1	100	94.832	Pygocentrus_nattereri
ENSSDUG00000009629	-	100	92.480	ENSRNOG00000020134	Upf1	100	92.480	Rattus_norvegicus
ENSSDUG00000009629	-	95	91.738	ENSRBIG00000013894	UPF1	98	94.651	Rhinopithecus_bieti
ENSSDUG00000009629	-	95	94.112	ENSRROG00000040935	UPF1	98	94.651	Rhinopithecus_roxellana
ENSSDUG00000009629	-	76	55.778	YMR080C	NAM7	87	55.778	Saccharomyces_cerevisiae
ENSSDUG00000009629	-	94	94.370	ENSSBOG00000023632	UPF1	96	94.275	Saimiri_boliviensis_boliviensis
ENSSDUG00000009629	-	95	94.123	ENSSHAG00000010499	UPF1	100	94.028	Sarcophilus_harrisii
ENSSDUG00000009629	-	100	95.917	ENSSFOG00015021095	upf1	100	95.917	Scleropages_formosus
ENSSDUG00000009629	-	100	99.274	ENSSMAG00000021018	-	100	99.274	Scophthalmus_maximus
ENSSDUG00000009629	-	100	91.226	ENSSMAG00000005055	upf1	100	91.853	Scophthalmus_maximus
ENSSDUG00000009629	-	100	100.000	ENSSLDG00000006878	-	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000009629	-	100	92.876	ENSSLDG00000020868	upf1	100	93.237	Seriola_lalandi_dorsalis
ENSSDUG00000009629	-	100	93.261	ENSSPUG00000010538	UPF1	100	93.261	Sphenodon_punctatus
ENSSDUG00000009629	-	100	99.183	ENSSPAG00000011521	-	100	99.183	Stegastes_partitus
ENSSDUG00000009629	-	100	91.041	ENSSPAG00000000003	upf1	100	90.926	Stegastes_partitus
ENSSDUG00000009629	-	100	92.940	ENSSSCG00000039301	UPF1	99	94.833	Sus_scrofa
ENSSDUG00000009629	-	82	87.021	ENSTGUG00000001057	UPF1	100	91.420	Taeniopygia_guttata
ENSSDUG00000009629	-	100	92.475	ENSTRUG00000000150	upf1	100	92.384	Takifugu_rubripes
ENSSDUG00000009629	-	100	97.459	ENSTRUG00000005131	-	100	97.459	Takifugu_rubripes
ENSSDUG00000009629	-	100	89.276	ENSTTRG00000011544	UPF1	100	89.187	Tursiops_truncatus
ENSSDUG00000009629	-	100	92.692	ENSUAMG00000007093	UPF1	100	92.692	Ursus_americanus
ENSSDUG00000009629	-	95	94.928	ENSUMAG00000006652	UPF1	99	95.243	Ursus_maritimus
ENSSDUG00000009629	-	100	92.781	ENSVVUG00000007797	UPF1	100	92.781	Vulpes_vulpes
ENSSDUG00000009629	-	100	80.000	ENSXETG00000013602	upf1	100	80.000	Xenopus_tropicalis
ENSSDUG00000009629	-	94	98.064	ENSXCOG00000005764	-	100	98.064	Xiphophorus_couchianus
ENSSDUG00000009629	-	97	91.455	ENSXCOG00000015275	-	96	91.455	Xiphophorus_couchianus
ENSSDUG00000009629	-	100	91.652	ENSXMAG00000001703	-	100	91.652	Xiphophorus_maculatus
ENSSDUG00000009629	-	100	98.094	ENSXMAG00000002540	-	100	98.094	Xiphophorus_maculatus