EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000009652 (Gene tree)
Gene ID: 111232182
Gene Symbol: safb
Alias: wu:fb40a03|wu:fd42g06|zgc:55387
Full Name: scaffold attachment factor B2-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 7955 bases
Position: chrBDQW01000322.1:3154942-3162896
Accession: 111232182
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000013351	RRM_1	PF00076.22	5.3e-14	1	1
ENSSDUP00000013419	RRM_1	PF00076.22	6.5e-14	1	1
ENSSDUP00000013351	SAP	PF02037.27	2.9e-09	1	1
ENSSDUP00000013419	SAP	PF02037.27	2.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000013596	-	2313	-	ENSSDUP00000013351	770 (aa)	-	-
ENSSDUT00000013664	-	2271	XM_022759580	ENSSDUP00000013419	756 (aa)	XP_022615301	-

Gene Model

Click here to download ENSSDUG00000009652's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000009652's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000009652	safb	72	41.158	ENSG00000160633	SAFB	78	64.754	Homo_sapiens
ENSSDUG00000009652	safb	100	82.048	ENSAPOG00000022508	safb	100	82.530	Acanthochromis_polyacanthus
ENSSDUG00000009652	safb	72	41.467	ENSAMEG00000012254	SAFB	98	42.225	Ailuropoda_melanoleuca
ENSSDUG00000009652	safb	98	83.377	ENSACIG00000006247	safb	100	83.377	Amphilophus_citrinellus
ENSSDUG00000009652	safb	100	80.510	ENSAOCG00000006308	safb	100	81.234	Amphiprion_ocellaris
ENSSDUG00000009652	safb	100	81.348	ENSAPEG00000023342	safb	100	81.949	Amphiprion_percula
ENSSDUG00000009652	safb	100	82.177	ENSATEG00000004998	safb	100	81.459	Anabas_testudineus
ENSSDUG00000009652	safb	63	39.432	ENSAPLG00000005780	-	98	42.334	Anas_platyrhynchos
ENSSDUG00000009652	safb	63	41.935	ENSAPLG00000006355	-	99	45.868	Anas_platyrhynchos
ENSSDUG00000009652	safb	62	58.371	ENSACAG00000016893	-	96	44.094	Anolis_carolinensis
ENSSDUG00000009652	safb	72	42.857	ENSANAG00000028821	SAFB	95	43.902	Aotus_nancymaae
ENSSDUG00000009652	safb	100	83.733	ENSACLG00000001926	safb	100	84.237	Astatotilapia_calliptera
ENSSDUG00000009652	safb	98	62.118	ENSAMXG00000018154	safb	100	62.025	Astyanax_mexicanus
ENSSDUG00000009652	safb	97	41.855	ENSBTAG00000007875	SAFB	95	40.853	Bos_taurus
ENSSDUG00000009652	safb	63	42.694	ENSCJAG00000017081	SAFB	95	51.756	Callithrix_jacchus
ENSSDUG00000009652	safb	72	42.492	ENSCAFG00000018803	SAFB	83	42.779	Canis_familiaris
ENSSDUG00000009652	safb	72	42.584	ENSCAFG00020018943	SAFB	97	42.641	Canis_lupus_dingo
ENSSDUG00000009652	safb	97	41.991	ENSCHIG00000007262	SAFB	95	40.632	Capra_hircus
ENSSDUG00000009652	safb	72	42.675	ENSCCAG00000020193	SAFB	95	43.889	Cebus_capucinus
ENSSDUG00000009652	safb	72	40.978	ENSCATG00000029994	SAFB	95	43.383	Cercocebus_atys
ENSSDUG00000009652	safb	70	41.961	ENSCSAG00000009949	SAFB	95	41.557	Chlorocebus_sabaeus
ENSSDUG00000009652	safb	63	32.168	ENSCHOG00000003208	SAFB	87	37.004	Choloepus_hoffmanni
ENSSDUG00000009652	safb	90	43.800	ENSCPBG00000010936	-	97	43.572	Chrysemys_picta_bellii
ENSSDUG00000009652	safb	91	41.044	ENSCPBG00000010928	-	98	43.291	Chrysemys_picta_bellii
ENSSDUG00000009652	safb	97	42.940	ENSCANG00000019754	-	93	40.433	Colobus_angolensis_palliatus
ENSSDUG00000009652	safb	94	39.039	ENSCANG00000004774	-	93	43.367	Colobus_angolensis_palliatus
ENSSDUG00000009652	safb	99	76.115	ENSCSEG00000019870	safb	100	76.115	Cynoglossus_semilaevis
ENSSDUG00000009652	safb	100	66.962	ENSCVAG00000002226	safb	100	67.595	Cyprinodon_variegatus
ENSSDUG00000009652	safb	96	62.874	ENSDARG00000020467	safb	98	62.993	Danio_rerio
ENSSDUG00000009652	safb	70	41.951	ENSDNOG00000015746	SAFB	95	38.067	Dasypus_novemcinctus
ENSSDUG00000009652	safb	68	42.044	ENSEASG00005023019	SAFB	97	41.540	Equus_asinus_asinus
ENSSDUG00000009652	safb	68	41.892	ENSECAG00000018659	SAFB	87	42.484	Equus_caballus
ENSSDUG00000009652	safb	99	64.277	ENSELUG00000022327	safb	99	64.630	Esox_lucius
ENSSDUG00000009652	safb	72	42.834	ENSFCAG00000011835	SAFB	97	40.615	Felis_catus
ENSSDUG00000009652	safb	59	40.429	ENSFALG00000013881	-	96	43.142	Ficedula_albicollis
ENSSDUG00000009652	safb	68	42.339	ENSFALG00000013882	-	87	43.688	Ficedula_albicollis
ENSSDUG00000009652	safb	61	56.322	ENSFDAG00000020306	SAFB	66	58.103	Fukomys_damarensis
ENSSDUG00000009652	safb	100	67.506	ENSFHEG00000004219	safb	100	69.395	Fundulus_heteroclitus
ENSSDUG00000009652	safb	100	69.428	ENSGMOG00000014280	safb	100	70.037	Gadus_morhua
ENSSDUG00000009652	safb	68	42.880	ENSGALG00000001948	-	97	43.684	Gallus_gallus
ENSSDUG00000009652	safb	99	41.676	ENSGALG00000013365	-	97	43.948	Gallus_gallus
ENSSDUG00000009652	safb	100	66.788	ENSGAFG00000016162	safb	100	65.333	Gambusia_affinis
ENSSDUG00000009652	safb	100	76.010	ENSGACG00000011385	safb	100	76.010	Gasterosteus_aculeatus
ENSSDUG00000009652	safb	71	50.667	ENSGAGG00000017702	-	89	53.457	Gopherus_agassizii
ENSSDUG00000009652	safb	95	47.807	ENSGAGG00000008424	-	98	46.417	Gopherus_agassizii
ENSSDUG00000009652	safb	72	41.824	ENSGGOG00000015109	SAFB	95	43.498	Gorilla_gorilla
ENSSDUG00000009652	safb	100	81.582	ENSHBUG00000009218	safb	100	81.582	Haplochromis_burtoni
ENSSDUG00000009652	safb	59	39.731	ENSHGLG00100004228	SAFB	70	41.488	Heterocephalus_glaber_male
ENSSDUG00000009652	safb	94	64.851	ENSHCOG00000001705	safb	99	63.943	Hippocampus_comes
ENSSDUG00000009652	safb	99	63.429	ENSIPUG00000024869	safb2	98	64.431	Ictalurus_punctatus
ENSSDUG00000009652	safb	100	74.038	ENSKMAG00000022308	safb	100	73.747	Kryptolebias_marmoratus
ENSSDUG00000009652	safb	100	78.107	ENSLBEG00000006015	safb	100	77.988	Labrus_bergylta
ENSSDUG00000009652	safb	70	44.608	ENSLACG00000018090	SAFB	98	48.451	Latimeria_chalumnae
ENSSDUG00000009652	safb	98	62.747	ENSLOCG00000003613	safb	99	62.181	Lepisosteus_oculatus
ENSSDUG00000009652	safb	94	43.018	ENSLAFG00000003840	SAFB	96	42.375	Loxodonta_africana
ENSSDUG00000009652	safb	72	41.772	ENSMFAG00000003885	SAFB	95	43.383	Macaca_fascicularis
ENSSDUG00000009652	safb	86	43.137	ENSMMUG00000017970	SAFB	95	43.978	Macaca_mulatta
ENSSDUG00000009652	safb	97	42.202	ENSMNEG00000035637	SAFB	95	43.158	Macaca_nemestrina
ENSSDUG00000009652	safb	97	40.847	ENSMLEG00000038637	SAFB	95	41.842	Mandrillus_leucophaeus
ENSSDUG00000009652	safb	100	82.297	ENSMAMG00000003357	safb	91	81.699	Mastacembelus_armatus
ENSSDUG00000009652	safb	100	83.607	ENSMZEG00005009120	safb	100	84.111	Maylandia_zebra
ENSSDUG00000009652	safb	50	59.504	ENSMGAG00000001051	-	77	59.504	Meleagris_gallopavo
ENSSDUG00000009652	safb	97	39.847	ENSMGAG00000001101	-	98	42.018	Meleagris_gallopavo
ENSSDUG00000009652	safb	84	38.822	ENSMICG00000046795	-	95	38.622	Microcebus_murinus
ENSSDUG00000009652	safb	86	43.366	ENSMICG00000008739	-	97	43.764	Microcebus_murinus
ENSSDUG00000009652	safb	94	42.286	ENSMODG00000001236	SAFB	95	39.914	Monodelphis_domestica
ENSSDUG00000009652	safb	100	80.448	ENSMALG00000020330	safb	100	79.976	Monopterus_albus
ENSSDUG00000009652	safb	72	41.346	ENSMPUG00000006123	SAFB	91	40.543	Mustela_putorius_furo
ENSSDUG00000009652	safb	98	42.295	ENSMLUG00000001081	SAFB	95	39.688	Myotis_lucifugus
ENSSDUG00000009652	safb	94	41.284	ENSNLEG00000013551	SAFB	97	43.750	Nomascus_leucogenys
ENSSDUG00000009652	safb	63	39.184	ENSOPRG00000011561	-	98	38.424	Ochotona_princeps
ENSSDUG00000009652	safb	56	50.804	ENSODEG00000014838	SAFB	95	40.968	Octodon_degus
ENSSDUG00000009652	safb	100	78.784	ENSONIG00000002318	safb	100	79.499	Oreochromis_niloticus
ENSSDUG00000009652	safb	87	39.801	ENSOCUG00000014628	SAFB	88	41.199	Oryctolagus_cuniculus
ENSSDUG00000009652	safb	98	72.147	ENSORLG00000016989	safb	100	71.223	Oryzias_latipes
ENSSDUG00000009652	safb	98	72.510	ENSORLG00020000404	safb	100	72.280	Oryzias_latipes_hni
ENSSDUG00000009652	safb	98	72.270	ENSORLG00015010733	safb	100	71.514	Oryzias_latipes_hsok
ENSSDUG00000009652	safb	100	73.045	ENSOMEG00000009066	safb	100	72.323	Oryzias_melastigma
ENSSDUG00000009652	safb	68	43.311	ENSOGAG00000027769	SAFB	97	41.549	Otolemur_garnettii
ENSSDUG00000009652	safb	97	39.061	ENSOARG00000007662	-	95	38.964	Ovis_aries
ENSSDUG00000009652	safb	79	38.551	ENSOARG00000007856	-	100	36.863	Ovis_aries
ENSSDUG00000009652	safb	89	41.102	ENSPPAG00000035129	SAFB	95	43.268	Pan_paniscus
ENSSDUG00000009652	safb	72	42.834	ENSPPRG00000017197	SAFB	97	40.615	Panthera_pardus
ENSSDUG00000009652	safb	89	41.002	ENSPTRG00000010335	SAFB	95	43.268	Pan_troglodytes
ENSSDUG00000009652	safb	72	40.952	ENSPANG00000007770	SAFB	95	43.764	Papio_anubis
ENSSDUG00000009652	safb	99	62.116	ENSPKIG00000009902	safb	99	62.486	Paramormyrops_kingsleyae
ENSSDUG00000009652	safb	98	45.726	ENSPSIG00000011679	-	98	46.014	Pelodiscus_sinensis
ENSSDUG00000009652	safb	98	45.307	ENSPSIG00000009367	-	96	45.168	Pelodiscus_sinensis
ENSSDUG00000009652	safb	61	48.619	ENSPCIG00000009504	-	98	48.214	Phascolarctos_cinereus
ENSSDUG00000009652	safb	100	69.762	ENSPFOG00000007745	safb	100	68.507	Poecilia_formosa
ENSSDUG00000009652	safb	100	66.867	ENSPLAG00000001614	safb	100	65.666	Poecilia_latipinna
ENSSDUG00000009652	safb	100	69.762	ENSPMEG00000021023	safb	100	68.507	Poecilia_mexicana
ENSSDUG00000009652	safb	100	68.311	ENSPREG00000012496	safb	100	67.078	Poecilia_reticulata
ENSSDUG00000009652	safb	70	42.122	ENSPPYG00000009428	SAFB	95	41.538	Pongo_abelii
ENSSDUG00000009652	safb	95	38.150	ENSPCAG00000006475	SAFB	95	40.241	Procavia_capensis
ENSSDUG00000009652	safb	97	40.341	ENSPCOG00000014090	SAFB	97	41.190	Propithecus_coquereli
ENSSDUG00000009652	safb	69	54.054	ENSPVAG00000004913	SAFB	71	54.054	Pteropus_vampyrus
ENSSDUG00000009652	safb	99	63.830	ENSPNAG00000021838	safb	99	64.685	Pygocentrus_nattereri
ENSSDUG00000009652	safb	70	43.426	ENSRBIG00000042509	SAFB	95	41.315	Rhinopithecus_bieti
ENSSDUG00000009652	safb	72	41.680	ENSRROG00000029278	SAFB	95	41.367	Rhinopithecus_roxellana
ENSSDUG00000009652	safb	72	42.698	ENSSBOG00000026291	SAFB	95	43.866	Saimiri_boliviensis_boliviensis
ENSSDUG00000009652	safb	99	62.946	ENSSFOG00015008156	safb	99	62.630	Scleropages_formosus
ENSSDUG00000009652	safb	100	83.353	ENSSMAG00000009316	safb	100	83.353	Scophthalmus_maximus
ENSSDUG00000009652	safb	100	91.546	ENSSLDG00000001670	safb	100	91.546	Seriola_lalandi_dorsalis
ENSSDUG00000009652	safb	63	41.208	ENSSARG00000010475	SAFB	98	38.542	Sorex_araneus
ENSSDUG00000009652	safb	59	40.228	ENSSPUG00000009747	-	99	39.424	Sphenodon_punctatus
ENSSDUG00000009652	safb	99	82.558	ENSSPAG00000015682	safb	99	82.687	Stegastes_partitus
ENSSDUG00000009652	safb	97	40.247	ENSSSCG00000013522	SAFB	96	41.635	Sus_scrofa
ENSSDUG00000009652	safb	68	42.596	ENSTGUG00000000502	-	97	44.419	Taeniopygia_guttata
ENSSDUG00000009652	safb	67	43.939	ENSTGUG00000000489	-	96	47.897	Taeniopygia_guttata
ENSSDUG00000009652	safb	100	74.970	ENSTRUG00000003567	safb	100	74.850	Takifugu_rubripes
ENSSDUG00000009652	safb	91	71.313	ENSTNIG00000015470	safb	93	71.151	Tetraodon_nigroviridis
ENSSDUG00000009652	safb	69	75.000	ENSTTRG00000013588	SAFB	64	75.000	Tursiops_truncatus
ENSSDUG00000009652	safb	81	43.053	ENSUMAG00000009734	SAFB	87	42.289	Ursus_maritimus
ENSSDUG00000009652	safb	60	50.152	ENSVPAG00000012043	SAFB	63	49.565	Vicugna_pacos
ENSSDUG00000009652	safb	72	42.492	ENSVVUG00000013720	SAFB	83	43.122	Vulpes_vulpes
ENSSDUG00000009652	safb	56	58.491	ENSXETG00000008755	safb	84	59.341	Xenopus_tropicalis
ENSSDUG00000009652	safb	100	70.138	ENSXMAG00000003458	safb	100	68.883	Xiphophorus_maculatus