EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000009916 (Gene tree)
Gene ID: 111240272
Gene Symbol: -
Alias: -
Full Name: 60S ribosomal protein L4-B-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 2863 bases
Position: chrBDQW01028406.1:32-2894
Accession: 111240272
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000013641	Ribosomal_L4	PF00573.22	1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000013888	-	1622	XM_022770230	ENSSDUP00000013641	234 (aa)	XP_022625951	UPI000BBEB7A3

Gene Model

Click here to download ENSSDUG00000009916's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03010	Ribosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000009916's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000009916	-	87	88.177	ENSG00000174444	RPL4	61	88.177	Homo_sapiens
ENSSDUG00000009916	-	98	94.872	ENSAPOG00000008471	rpl4	63	94.872	Acanthochromis_polyacanthus
ENSSDUG00000009916	-	99	87.179	ENSACIG00000003731	rpl4	58	94.388	Amphilophus_citrinellus
ENSSDUG00000009916	-	98	94.872	ENSAOCG00000022562	rpl4	63	94.872	Amphiprion_ocellaris
ENSSDUG00000009916	-	98	94.872	ENSAPEG00000020765	rpl4	63	94.872	Amphiprion_percula
ENSSDUG00000009916	-	98	96.943	ENSATEG00000009670	rpl4	62	96.943	Anabas_testudineus
ENSSDUG00000009916	-	87	88.177	ENSAPLG00000015853	-	68	88.177	Anas_platyrhynchos
ENSSDUG00000009916	-	87	84.729	ENSANAG00000002807	-	51	84.729	Aotus_nancymaae
ENSSDUG00000009916	-	98	95.633	ENSACLG00000015376	rpl4	56	95.652	Astatotilapia_calliptera
ENSSDUG00000009916	-	93	88.479	ENSAMXG00000029678	rpl4	55	88.406	Astyanax_mexicanus
ENSSDUG00000009916	-	91	85.446	ENSBTAG00000005211	RPL4	53	88.177	Bos_taurus
ENSSDUG00000009916	-	86	53.695	WBGene00004415	rpl-4	59	53.695	Caenorhabditis_elegans
ENSSDUG00000009916	-	87	87.192	ENSCJAG00000023126	-	54	87.192	Callithrix_jacchus
ENSSDUG00000009916	-	97	76.190	ENSCAFG00020010362	-	52	82.353	Canis_lupus_dingo
ENSSDUG00000009916	-	91	81.221	ENSCHIG00000018671	-	50	83.744	Capra_hircus
ENSSDUG00000009916	-	87	75.369	ENSCHIG00000024016	-	52	75.369	Capra_hircus
ENSSDUG00000009916	-	94	71.946	ENSCHIG00000000266	-	52	75.248	Capra_hircus
ENSSDUG00000009916	-	91	83.099	ENSCHIG00000011248	-	50	85.714	Capra_hircus
ENSSDUG00000009916	-	94	81.818	ENSCAPG00000014353	RPL4	51	87.192	Cavia_aperea
ENSSDUG00000009916	-	86	84.080	ENSCATG00000033739	-	63	84.080	Cercocebus_atys
ENSSDUG00000009916	-	86	78.218	ENSCATG00000000611	-	50	77.340	Cercocebus_atys
ENSSDUG00000009916	-	81	81.053	ENSCATG00000035020	-	60	81.053	Cercocebus_atys
ENSSDUG00000009916	-	92	87.037	ENSCPBG00000014091	RPL4	57	90.640	Chrysemys_picta_bellii
ENSSDUG00000009916	-	86	68.657	ENSCING00000008014	-	72	68.657	Ciona_intestinalis
ENSSDUG00000009916	-	91	66.981	ENSCSAVG00000002010	-	63	69.512	Ciona_savignyi
ENSSDUG00000009916	-	86	76.617	ENSCANG00000040945	-	50	76.617	Colobus_angolensis_palliatus
ENSSDUG00000009916	-	87	78.818	ENSCANG00000038725	-	51	77.833	Colobus_angolensis_palliatus
ENSSDUG00000009916	-	87	88.177	ENSCANG00000040740	-	51	88.177	Colobus_angolensis_palliatus
ENSSDUG00000009916	-	87	77.340	ENSCGRG00001021316	-	51	77.340	Cricetulus_griseus_chok1gshd
ENSSDUG00000009916	-	86	86.139	ENSCGRG00000002190	-	51	84.951	Cricetulus_griseus_crigri
ENSSDUG00000009916	-	88	91.787	ENSCSEG00000006912	rpl4	56	91.787	Cynoglossus_semilaevis
ENSSDUG00000009916	-	91	96.226	ENSCVAG00000006005	rpl4	56	96.135	Cyprinodon_variegatus
ENSSDUG00000009916	-	91	82.075	ENSDARG00000041182	rpl4	57	82.075	Danio_rerio
ENSSDUG00000009916	-	71	67.066	ENSDNOG00000038463	-	74	67.066	Dasypus_novemcinctus
ENSSDUG00000009916	-	83	85.567	ENSDORG00000029479	-	53	85.567	Dipodomys_ordii
ENSSDUG00000009916	-	87	66.995	ENSDORG00000023527	-	59	66.995	Dipodomys_ordii
ENSSDUG00000009916	-	95	58.559	FBgn0003279	RpL4	51	60.680	Drosophila_melanogaster
ENSSDUG00000009916	-	86	73.134	ENSEBUG00000006663	rpl4	60	71.359	Eptatretus_burgeri
ENSSDUG00000009916	-	88	96.618	ENSELUG00000002885	rpl4	55	96.618	Esox_lucius
ENSSDUG00000009916	-	87	88.177	ENSFALG00000012799	RPL4	52	88.177	Ficedula_albicollis
ENSSDUG00000009916	-	91	96.226	ENSFHEG00000005347	rpl4	58	95.652	Fundulus_heteroclitus
ENSSDUG00000009916	-	94	91.403	ENSGMOG00000008359	rpl4	58	92.271	Gadus_morhua
ENSSDUG00000009916	-	87	88.177	ENSGALG00000007711	RPL4	52	88.177	Gallus_gallus
ENSSDUG00000009916	-	91	95.283	ENSGAFG00000020724	rpl4	56	95.169	Gambusia_affinis
ENSSDUG00000009916	-	88	94.203	ENSGACG00000004968	rpl4	56	94.203	Gasterosteus_aculeatus
ENSSDUG00000009916	-	87	90.640	ENSGAGG00000004526	RPL4	57	90.640	Gopherus_agassizii
ENSSDUG00000009916	-	68	77.358	ENSGGOG00000026797	-	59	77.500	Gorilla_gorilla
ENSSDUG00000009916	-	98	95.633	ENSHBUG00000012721	rpl4	56	95.652	Haplochromis_burtoni
ENSSDUG00000009916	-	86	76.617	ENSHGLG00000017848	-	70	75.622	Heterocephalus_glaber_female
ENSSDUG00000009916	-	86	79.602	ENSHGLG00000019179	-	50	79.602	Heterocephalus_glaber_female
ENSSDUG00000009916	-	86	73.632	ENSHGLG00100018267	-	71	73.632	Heterocephalus_glaber_male
ENSSDUG00000009916	-	86	78.607	ENSHGLG00100015244	-	50	78.607	Heterocephalus_glaber_male
ENSSDUG00000009916	-	91	91.121	ENSHCOG00000014929	rpl4	62	91.981	Hippocampus_comes
ENSSDUG00000009916	-	94	89.041	ENSIPUG00000021502	rpl4	57	88.679	Ictalurus_punctatus
ENSSDUG00000009916	-	87	82.266	ENSJJAG00000003088	-	51	82.266	Jaculus_jaculus
ENSSDUG00000009916	-	91	94.340	ENSKMAG00000019520	rpl4	56	94.203	Kryptolebias_marmoratus
ENSSDUG00000009916	-	91	95.283	ENSLBEG00000015490	rpl4	57	95.283	Labrus_bergylta
ENSSDUG00000009916	-	93	87.097	ENSLACG00000006259	RPL4	56	90.640	Latimeria_chalumnae
ENSSDUG00000009916	-	88	91.304	ENSLOCG00000013867	rpl4	56	91.304	Lepisosteus_oculatus
ENSSDUG00000009916	-	97	80.435	ENSLAFG00000006494	RPL4	50	88.177	Loxodonta_africana
ENSSDUG00000009916	-	87	78.818	ENSMFAG00000000187	-	67	78.818	Macaca_fascicularis
ENSSDUG00000009916	-	86	79.208	ENSMMUG00000023202	-	75	78.818	Macaca_mulatta
ENSSDUG00000009916	-	87	77.340	ENSMNEG00000045350	-	51	77.340	Macaca_nemestrina
ENSSDUG00000009916	-	86	77.723	ENSMNEG00000041360	-	67	77.340	Macaca_nemestrina
ENSSDUG00000009916	-	86	77.612	ENSMLEG00000000207	-	53	77.228	Mandrillus_leucophaeus
ENSSDUG00000009916	-	87	79.310	ENSMLEG00000038036	-	50	78.818	Mandrillus_leucophaeus
ENSSDUG00000009916	-	86	84.577	ENSMLEG00000039344	-	63	84.577	Mandrillus_leucophaeus
ENSSDUG00000009916	-	91	97.170	ENSMAMG00000006058	rpl4	61	96.618	Mastacembelus_armatus
ENSSDUG00000009916	-	98	95.633	ENSMZEG00005022644	rpl4	56	95.652	Maylandia_zebra
ENSSDUG00000009916	-	63	79.817	ENSMAUG00000009392	-	55	55.721	Mesocricetus_auratus
ENSSDUG00000009916	-	87	79.412	ENSMICG00000035358	-	66	79.412	Microcebus_murinus
ENSSDUG00000009916	-	98	95.197	ENSMMOG00000002856	rpl4	55	95.652	Mola_mola
ENSSDUG00000009916	-	88	85.024	ENSMALG00000007697	rpl4	56	83.254	Monopterus_albus
ENSSDUG00000009916	-	74	79.191	ENSMLUG00000026837	-	76	80.110	Myotis_lucifugus
ENSSDUG00000009916	-	87	84.236	ENSMLUG00000024130	-	65	84.236	Myotis_lucifugus
ENSSDUG00000009916	-	86	78.607	ENSNGAG00000003647	-	54	78.607	Nannospalax_galili
ENSSDUG00000009916	-	99	94.828	ENSNBRG00000000112	-	81	94.762	Neolamprologus_brichardi
ENSSDUG00000009916	-	99	94.828	ENSNBRG00000015986	rpl4	79	94.286	Neolamprologus_brichardi
ENSSDUG00000009916	-	87	86.700	ENSNLEG00000011208	-	50	86.700	Nomascus_leucogenys
ENSSDUG00000009916	-	90	72.512	ENSNLEG00000034865	-	56	76.684	Nomascus_leucogenys
ENSSDUG00000009916	-	86	83.168	ENSMEUG00000003992	RPL4	57	83.168	Notamacropus_eugenii
ENSSDUG00000009916	-	88	86.893	ENSOPRG00000007792	RPL4	60	86.893	Ochotona_princeps
ENSSDUG00000009916	-	85	76.500	ENSODEG00000008514	-	62	76.500	Octodon_degus
ENSSDUG00000009916	-	94	81.448	ENSODEG00000016495	-	52	87.192	Octodon_degus
ENSSDUG00000009916	-	90	70.000	ENSODEG00000014131	-	65	73.171	Octodon_degus
ENSSDUG00000009916	-	85	73.869	ENSODEG00000012486	-	51	73.500	Octodon_degus
ENSSDUG00000009916	-	98	94.760	ENSONIG00000015438	rpl4	56	95.169	Oreochromis_niloticus
ENSSDUG00000009916	-	97	79.741	ENSOCUG00000008794	RPL4	52	87.192	Oryctolagus_cuniculus
ENSSDUG00000009916	-	98	92.576	ENSORLG00000006882	rpl4	56	95.169	Oryzias_latipes
ENSSDUG00000009916	-	98	92.576	ENSORLG00020007732	rpl4	56	95.169	Oryzias_latipes_hni
ENSSDUG00000009916	-	98	92.576	ENSORLG00015021776	rpl4	56	95.169	Oryzias_latipes_hsok
ENSSDUG00000009916	-	91	95.755	ENSOMEG00000021252	rpl4	55	95.652	Oryzias_melastigma
ENSSDUG00000009916	-	91	95.755	ENSOMEG00000005867	-	56	95.652	Oryzias_melastigma
ENSSDUG00000009916	-	82	61.140	ENSOARG00000006052	-	95	61.140	Ovis_aries
ENSSDUG00000009916	-	85	75.622	ENSPPAG00000033093	-	65	74.877	Pan_paniscus
ENSSDUG00000009916	-	86	73.762	ENSPPAG00000031024	-	72	73.762	Pan_paniscus
ENSSDUG00000009916	-	83	78.351	ENSPTRG00000044817	-	59	78.351	Pan_troglodytes
ENSSDUG00000009916	-	86	73.762	ENSPTRG00000052702	-	72	73.762	Pan_troglodytes
ENSSDUG00000009916	-	94	55.738	ENSPANG00000034773	-	64	55.602	Papio_anubis
ENSSDUG00000009916	-	87	82.759	ENSPANG00000012606	-	50	82.759	Papio_anubis
ENSSDUG00000009916	-	86	78.713	ENSPANG00000006339	-	55	78.325	Papio_anubis
ENSSDUG00000009916	-	92	92.130	ENSPKIG00000015644	rpl4	52	91.509	Paramormyrops_kingsleyae
ENSSDUG00000009916	-	92	86.574	ENSPSIG00000011400	RPL4	57	90.148	Pelodiscus_sinensis
ENSSDUG00000009916	-	99	93.074	ENSPMGG00000009930	rpl4	57	95.215	Periophthalmus_magnuspinnatus
ENSSDUG00000009916	-	91	95.283	ENSPFOG00000008365	rpl4	56	95.169	Poecilia_formosa
ENSSDUG00000009916	-	91	95.283	ENSPLAG00000014151	rpl4	56	95.169	Poecilia_latipinna
ENSSDUG00000009916	-	91	94.811	ENSPMEG00000012882	rpl4	56	94.686	Poecilia_mexicana
ENSSDUG00000009916	-	91	94.340	ENSPREG00000010449	rpl4	56	94.203	Poecilia_reticulata
ENSSDUG00000009916	-	79	81.183	ENSPCOG00000017340	-	52	80.749	Propithecus_coquereli
ENSSDUG00000009916	-	98	95.197	ENSPNYG00000014038	rpl4	56	95.169	Pundamilia_nyererei
ENSSDUG00000009916	-	91	85.377	ENSPNAG00000014698	rpl4	58	85.377	Pygocentrus_nattereri
ENSSDUG00000009916	-	87	87.685	ENSRBIG00000011853	-	52	87.685	Rhinopithecus_bieti
ENSSDUG00000009916	-	86	74.752	ENSRBIG00000032836	-	52	74.384	Rhinopithecus_bieti
ENSSDUG00000009916	-	87	88.177	ENSRBIG00000043139	-	50	88.177	Rhinopithecus_bieti
ENSSDUG00000009916	-	86	77.612	ENSRBIG00000028221	-	53	77.612	Rhinopithecus_bieti
ENSSDUG00000009916	-	89	81.731	ENSRBIG00000036624	-	53	81.340	Rhinopithecus_bieti
ENSSDUG00000009916	-	89	79.904	ENSRROG00000033501	-	70	79.904	Rhinopithecus_roxellana
ENSSDUG00000009916	-	87	81.773	ENSRROG00000031930	-	51	80.788	Rhinopithecus_roxellana
ENSSDUG00000009916	-	90	73.973	ENSRROG00000027556	-	51	77.340	Rhinopithecus_roxellana
ENSSDUG00000009916	-	86	77.114	ENSRROG00000031634	-	73	77.114	Rhinopithecus_roxellana
ENSSDUG00000009916	-	82	54.872	YDR012W	RPL4B	54	54.872	Saccharomyces_cerevisiae
ENSSDUG00000009916	-	82	54.872	YBR031W	RPL4A	54	54.872	Saccharomyces_cerevisiae
ENSSDUG00000009916	-	87	82.266	ENSSBOG00000021302	-	59	82.266	Saimiri_boliviensis_boliviensis
ENSSDUG00000009916	-	96	89.778	ENSSFOG00015024033	rpl4	52	91.787	Scleropages_formosus
ENSSDUG00000009916	-	98	97.380	ENSSMAG00000014547	rpl4	62	97.380	Scophthalmus_maximus
ENSSDUG00000009916	-	100	97.095	ENSSLDG00000008195	rpl4	100	97.095	Seriola_lalandi_dorsalis
ENSSDUG00000009916	-	91	97.170	ENSSPAG00000019006	rpl4	55	97.101	Stegastes_partitus
ENSSDUG00000009916	-	97	80.870	ENSSSCG00000004945	-	51	87.192	Sus_scrofa
ENSSDUG00000009916	-	83	74.227	ENSSSCG00000034903	-	52	73.298	Sus_scrofa
ENSSDUG00000009916	-	87	88.177	ENSTGUG00000009403	RPL4	53	88.177	Taeniopygia_guttata
ENSSDUG00000009916	-	88	94.203	ENSTRUG00000014667	rpl4	56	94.203	Takifugu_rubripes
ENSSDUG00000009916	-	88	94.203	ENSTNIG00000008428	rpl4	56	94.203	Tetraodon_nigroviridis
ENSSDUG00000009916	-	91	81.221	ENSVVUG00000010149	-	58	83.744	Vulpes_vulpes
ENSSDUG00000009916	-	87	76.847	ENSVVUG00000013973	-	64	76.847	Vulpes_vulpes
ENSSDUG00000009916	-	91	85.981	ENSXETG00000015898	rpl4	51	87.685	Xenopus_tropicalis
ENSSDUG00000009916	-	91	91.549	ENSXCOG00000000123	rpl4	55	93.720	Xiphophorus_couchianus
ENSSDUG00000009916	-	91	94.340	ENSXMAG00000029529	rpl4	56	94.203	Xiphophorus_maculatus