EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000009935 (Gene tree)
Gene ID
111237851
Gene Symbol
puf60b
Alias
fe37c05|si:ch211-12p8.2|si:zc12p8.2|wu:fb33e11|wu:fe37c05|zgc:86806
Full Name
poly(U) binding splicing factor 60
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Plus strand
Length
7186 bases
Position
chrBDQW01001124.1:2622001-2629186
Accession
111237851
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000014067RRM_1PF00076.221e-4412
ENSSDUP00000014067RRM_1PF00076.221e-4422
ENSSDUP00000013963RRM_1PF00076.221.1e-4412
ENSSDUP00000013963RRM_1PF00076.221.1e-4422
ENSSDUP00000014034RRM_1PF00076.221.7e-4412
ENSSDUP00000014034RRM_1PF00076.221.7e-4422
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000014303-1596XM_022767130ENSSDUP00000014034531 (aa)XP_022622851-
ENSSDUT00000014336-1431XM_022767135ENSSDUP00000014067476 (aa)XP_022622856-
ENSSDUT00000014227-1446-ENSSDUP00000013963481 (aa)--
Gene Model
Click here to download ENSSDUG00000009935's gene model file
Pathways
Pathway IDPathway NameSource
sdu03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000009935's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000009935puf60b6035.294ENSSDUG00000009457u2af2a6337.255
ENSSDUG00000009935puf60b9782.136ENSSDUG00000007048-9682.946
ENSSDUG00000009935puf60b5731.250ENSSDUG00000012683pabpc46232.558
ENSSDUG00000009935puf60b5738.235ENSSDUG00000021434-6138.235
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000009935puf60b10083.302ENSG00000179950PUF6010084.211Homo_sapiens
ENSSDUG00000009935puf60b9997.331ENSAPOG00000001713puf60b9996.981Acanthochromis_polyacanthus
ENSSDUG00000009935puf60b9982.222ENSAMEG00000006406PUF609381.599Ailuropoda_melanoleuca
ENSSDUG00000009935puf60b10077.066ENSACIG00000003263-9977.479Amphilophus_citrinellus
ENSSDUG00000009935puf60b9996.565ENSACIG00000021705puf60b10096.565Amphilophus_citrinellus
ENSSDUG00000009935puf60b9982.787ENSAOCG00000015558-9982.674Amphiprion_ocellaris
ENSSDUG00000009935puf60b9997.331ENSAOCG00000005395puf60b10097.137Amphiprion_ocellaris
ENSSDUG00000009935puf60b10092.742ENSAPEG00000011923puf60b9991.509Amphiprion_percula
ENSSDUG00000009935puf60b10078.323ENSAPEG00000001836-9978.672Amphiprion_percula
ENSSDUG00000009935puf60b9981.148ENSATEG00000006303-9981.168Anabas_testudineus
ENSSDUG00000009935puf60b9997.741ENSATEG00000001730puf60b9997.736Anabas_testudineus
ENSSDUG00000009935puf60b9985.051ENSAPLG00000010150PUF6010084.387Anas_platyrhynchos
ENSSDUG00000009935puf60b9984.137ENSACAG00000001645PUF609782.746Anolis_carolinensis
ENSSDUG00000009935puf60b10083.117ENSANAG00000018626PUF6010084.023Aotus_nancymaae
ENSSDUG00000009935puf60b9996.565ENSACLG00000004462puf60b10096.565Astatotilapia_calliptera
ENSSDUG00000009935puf60b10085.141ENSAMXG00000036570puf60a10084.191Astyanax_mexicanus
ENSSDUG00000009935puf60b9980.769ENSAMXG00000041030puf60b10079.920Astyanax_mexicanus
ENSSDUG00000009935puf60b10083.673ENSBTAG00000037493PUF609983.829Bos_taurus
ENSSDUG00000009935puf60b9446.400WBGene00004389rnp-68354.355Caenorhabditis_elegans
ENSSDUG00000009935puf60b10083.302ENSCJAG00000021485PUF609983.302Callithrix_jacchus
ENSSDUG00000009935puf60b9984.040ENSCAFG00000001400PUF609383.086Canis_familiaris
ENSSDUG00000009935puf60b10083.488ENSCAFG00020018754PUF609983.488Canis_lupus_dingo
ENSSDUG00000009935puf60b9984.444ENSCHIG00000001618PUF608783.643Capra_hircus
ENSSDUG00000009935puf60b10083.673ENSTSYG00000011912PUF6010084.398Carlito_syrichta
ENSSDUG00000009935puf60b9979.559ENSCPOG00000014613PUF609478.782Cavia_porcellus
ENSSDUG00000009935puf60b10083.488ENSCCAG00000007744PUF609983.488Cebus_capucinus
ENSSDUG00000009935puf60b10083.302ENSCATG00000035405PUF609983.302Cercocebus_atys
ENSSDUG00000009935puf60b9984.646ENSCLAG00000009154PUF609383.643Chinchilla_lanigera
ENSSDUG00000009935puf60b9984.242ENSCSAG00000008878PUF6010084.211Chlorocebus_sabaeus
ENSSDUG00000009935puf60b9984.242ENSCPBG00000005595PUF609883.488Chrysemys_picta_bellii
ENSSDUG00000009935puf60b9948.134ENSCING00000008436-9847.575Ciona_intestinalis
ENSSDUG00000009935puf60b6362.857ENSCING00000002156-8662.857Ciona_intestinalis
ENSSDUG00000009935puf60b9945.842ENSCSAVG00000004765-9747.727Ciona_savignyi
ENSSDUG00000009935puf60b9953.033ENSCSAVG00000001385-9953.875Ciona_savignyi
ENSSDUG00000009935puf60b8084.264ENSCANG00000041843PUF6010083.372Colobus_angolensis_palliatus
ENSSDUG00000009935puf60b9984.646ENSCGRG00001017442Puf609383.829Cricetulus_griseus_chok1gshd
ENSSDUG00000009935puf60b9984.646ENSCGRG00000003717Puf609383.829Cricetulus_griseus_crigri
ENSSDUG00000009935puf60b9997.125ENSCSEG00000019887puf60b9396.981Cynoglossus_semilaevis
ENSSDUG00000009935puf60b10077.555ENSCSEG00000014845-8978.758Cynoglossus_semilaevis
ENSSDUG00000009935puf60b9995.611ENSCVAG00000009386puf60b10095.611Cyprinodon_variegatus
ENSSDUG00000009935puf60b9580.556ENSCVAG00000001560-9880.128Cyprinodon_variegatus
ENSSDUG00000009935puf60b10080.279ENSDARG00000001241puf60b9998.413Danio_rerio
ENSSDUG00000009935puf60b9984.888ENSDARG00000032175puf60a9992.766Danio_rerio
ENSSDUG00000009935puf60b9970.683ENSDNOG00000043278PUF609069.905Dasypus_novemcinctus
ENSSDUG00000009935puf60b9984.646ENSDORG00000004585Puf609583.829Dipodomys_ordii
ENSSDUG00000009935puf60b8667.033FBgn0028577hfp9948.754Drosophila_melanogaster
ENSSDUG00000009935puf60b9967.004ENSEBUG00000005470-8867.821Eptatretus_burgeri
ENSSDUG00000009935puf60b10058.957ENSEBUG00000014291puf60b8462.479Eptatretus_burgeri
ENSSDUG00000009935puf60b10083.488ENSEASG00005009695PUF609983.488Equus_asinus_asinus
ENSSDUG00000009935puf60b10083.488ENSECAG00000024681PUF609783.488Equus_caballus
ENSSDUG00000009935puf60b9988.235ENSELUG00000006507puf60b9988.603Esox_lucius
ENSSDUG00000009935puf60b9987.169ENSELUG00000018443-9986.704Esox_lucius
ENSSDUG00000009935puf60b10083.488ENSFCAG00000001045PUF6010084.398Felis_catus
ENSSDUG00000009935puf60b10074.954ENSFALG00000001136PUF609975.325Ficedula_albicollis
ENSSDUG00000009935puf60b9984.444ENSFDAG00000017177PUF609383.643Fukomys_damarensis
ENSSDUG00000009935puf60b9981.725ENSFHEG00000021687PUF6010082.158Fundulus_heteroclitus
ENSSDUG00000009935puf60b9996.415ENSFHEG00000020046puf60b10096.374Fundulus_heteroclitus
ENSSDUG00000009935puf60b9982.056ENSGMOG00000006392puf60b10081.682Gadus_morhua
ENSSDUG00000009935puf60b6590.221ENSGALG00000039901PUF609487.006Gallus_gallus
ENSSDUG00000009935puf60b9983.229ENSGAFG00000004334-9983.229Gambusia_affinis
ENSSDUG00000009935puf60b9996.226ENSGAFG00000021040puf60b10096.183Gambusia_affinis
ENSSDUG00000009935puf60b10083.616ENSGACG00000004717puf60b9983.616Gasterosteus_aculeatus
ENSSDUG00000009935puf60b9973.640ENSGACG00000001484-10070.565Gasterosteus_aculeatus
ENSSDUG00000009935puf60b9984.242ENSGAGG00000013289PUF609283.302Gopherus_agassizii
ENSSDUG00000009935puf60b10083.302ENSGGOG00000004646PUF609983.302Gorilla_gorilla
ENSSDUG00000009935puf60b9982.377ENSHBUG00000009634-10081.377Haplochromis_burtoni
ENSSDUG00000009935puf60b9996.604ENSHBUG00000015118puf60b10096.565Haplochromis_burtoni
ENSSDUG00000009935puf60b9984.444ENSHGLG00000006111PUF609383.643Heterocephalus_glaber_female
ENSSDUG00000009935puf60b9984.444ENSHGLG00100012362PUF609383.643Heterocephalus_glaber_male
ENSSDUG00000009935puf60b9996.067ENSHCOG00000015541puf60b10096.067Hippocampus_comes
ENSSDUG00000009935puf60b9969.520ENSHCOG00000000378-9966.341Hippocampus_comes
ENSSDUG00000009935puf60b10083.232ENSIPUG00000002453puf60a9983.271Ictalurus_punctatus
ENSSDUG00000009935puf60b10081.548ENSIPUG00000004660puf60b9981.548Ictalurus_punctatus
ENSSDUG00000009935puf60b9984.646ENSSTOG00000025037PUF609483.643Ictidomys_tridecemlineatus
ENSSDUG00000009935puf60b9984.646ENSJJAG00000001076Puf609383.829Jaculus_jaculus
ENSSDUG00000009935puf60b9996.183ENSKMAG00000016745puf60b10096.183Kryptolebias_marmoratus
ENSSDUG00000009935puf60b9977.869ENSKMAG00000010106-10077.196Kryptolebias_marmoratus
ENSSDUG00000009935puf60b9996.205ENSLBEG00000012505puf60b9996.205Labrus_bergylta
ENSSDUG00000009935puf60b7081.662ENSLACG00000005456PUF609976.903Latimeria_chalumnae
ENSSDUG00000009935puf60b9987.730ENSLOCG00000010106puf60b9987.218Lepisosteus_oculatus
ENSSDUG00000009935puf60b9983.636ENSLAFG00000022929PUF609482.714Loxodonta_africana
ENSSDUG00000009935puf60b10083.302ENSMFAG00000043373PUF609983.302Macaca_fascicularis
ENSSDUG00000009935puf60b10083.302ENSMMUG00000013558PUF609983.302Macaca_mulatta
ENSSDUG00000009935puf60b10083.302ENSMNEG00000031099PUF609983.302Macaca_nemestrina
ENSSDUG00000009935puf60b9984.242ENSMLEG00000040009PUF6010084.211Mandrillus_leucophaeus
ENSSDUG00000009935puf60b9997.343ENSMAMG00000010394puf60b10097.343Mastacembelus_armatus
ENSSDUG00000009935puf60b9982.582ENSMAMG00000019476-9981.955Mastacembelus_armatus
ENSSDUG00000009935puf60b9982.377ENSMZEG00005019425-9981.733Maylandia_zebra
ENSSDUG00000009935puf60b9996.565ENSMZEG00005018515puf60b10096.565Maylandia_zebra
ENSSDUG00000009935puf60b9985.051ENSMGAG00000013070PUF609884.387Meleagris_gallopavo
ENSSDUG00000009935puf60b6890.419ENSMAUG00000014267-9086.207Mesocricetus_auratus
ENSSDUG00000009935puf60b9967.400ENSMAUG00000018549-9568.033Mesocricetus_auratus
ENSSDUG00000009935puf60b10083.488ENSMICG00000012226PUF609983.643Microcebus_murinus
ENSSDUG00000009935puf60b9984.646ENSMOCG00000018780Puf609383.829Microtus_ochrogaster
ENSSDUG00000009935puf60b10076.349ENSMMOG00000018059-9978.404Mola_mola
ENSSDUG00000009935puf60b9997.331ENSMMOG00000004217puf60b10097.328Mola_mola
ENSSDUG00000009935puf60b9984.646ENSMODG00000009161PUF609483.271Monodelphis_domestica
ENSSDUG00000009935puf60b9990.807ENSMALG00000006797puf60b9990.807Monopterus_albus
ENSSDUG00000009935puf60b9980.943ENSMALG00000000200-9979.473Monopterus_albus
ENSSDUG00000009935puf60b9984.848MGP_CAROLIEiJ_G0019910Puf609384.201Mus_caroli
ENSSDUG00000009935puf60b9984.848ENSMUSG00000002524Puf609384.201Mus_musculus
ENSSDUG00000009935puf60b9984.848MGP_PahariEiJ_G0019920Puf609384.201Mus_pahari
ENSSDUG00000009935puf60b9984.848MGP_SPRETEiJ_G0020812Puf609384.201Mus_spretus
ENSSDUG00000009935puf60b9984.242ENSMPUG00000008137PUF609283.271Mustela_putorius_furo
ENSSDUG00000009935puf60b10078.571ENSMLUG00000013032-9977.365Myotis_lucifugus
ENSSDUG00000009935puf60b9984.990ENSMLUG00000000238-9383.086Myotis_lucifugus
ENSSDUG00000009935puf60b9984.774ENSNGAG00000000712Puf6010084.774Nannospalax_galili
ENSSDUG00000009935puf60b8397.968ENSNBRG00000013047puf60b9697.968Neolamprologus_brichardi
ENSSDUG00000009935puf60b9982.377ENSNBRG00000017223-9981.733Neolamprologus_brichardi
ENSSDUG00000009935puf60b9984.242ENSNLEG00000002156PUF609883.271Nomascus_leucogenys
ENSSDUG00000009935puf60b7295.618ENSOPRG00000002147PUF607294.585Ochotona_princeps
ENSSDUG00000009935puf60b9962.245ENSODEG00000015513-9760.985Octodon_degus
ENSSDUG00000009935puf60b7390.093ENSODEG00000014024-8890.093Octodon_degus
ENSSDUG00000009935puf60b9996.604ENSONIG00000006247puf60b9896.604Oreochromis_niloticus
ENSSDUG00000009935puf60b9982.172ENSONIG00000014030-9881.544Oreochromis_niloticus
ENSSDUG00000009935puf60b9769.632ENSOANG00000006962PUF609869.826Ornithorhynchus_anatinus
ENSSDUG00000009935puf60b9982.195ENSORLG00000028655-9982.195Oryzias_latipes
ENSSDUG00000009935puf60b9995.420ENSORLG00000012279puf60b10095.420Oryzias_latipes
ENSSDUG00000009935puf60b9995.420ENSORLG00020007333puf6010095.420Oryzias_latipes_hni
ENSSDUG00000009935puf60b9981.391ENSORLG00020018144-9879.887Oryzias_latipes_hni
ENSSDUG00000009935puf60b9994.888ENSORLG00015007718puf60b10095.057Oryzias_latipes_hsok
ENSSDUG00000009935puf60b9981.314ENSORLG00015016833-9879.849Oryzias_latipes_hsok
ENSSDUG00000009935puf60b10096.258ENSOMEG00000001643puf60b9996.981Oryzias_melastigma
ENSSDUG00000009935puf60b9981.276ENSOMEG00000022185-9879.096Oryzias_melastigma
ENSSDUG00000009935puf60b9984.646ENSOGAG00000006259PUF609383.643Otolemur_garnettii
ENSSDUG00000009935puf60b9982.520ENSOARG00000016235PUF609879.626Ovis_aries
ENSSDUG00000009935puf60b10083.302ENSPPAG00000029933PUF609983.302Pan_paniscus
ENSSDUG00000009935puf60b10083.488ENSPPRG00000003257PUF6010084.398Panthera_pardus
ENSSDUG00000009935puf60b10081.746ENSPTIG00000009795PUF609981.227Panthera_tigris_altaica
ENSSDUG00000009935puf60b10083.302ENSPTRG00000020670PUF609983.302Pan_troglodytes
ENSSDUG00000009935puf60b9984.242ENSPTRG00000043963-9883.271Pan_troglodytes
ENSSDUG00000009935puf60b10083.302ENSPANG00000021936PUF609983.302Papio_anubis
ENSSDUG00000009935puf60b9987.984ENSPKIG00000004295puf60a9989.306Paramormyrops_kingsleyae
ENSSDUG00000009935puf60b9988.740ENSPKIG00000012204puf60b10089.504Paramormyrops_kingsleyae
ENSSDUG00000009935puf60b9984.646ENSPSIG00000004679PUF609983.829Pelodiscus_sinensis
ENSSDUG00000009935puf60b10093.661ENSPMGG00000013444puf60b10093.573Periophthalmus_magnuspinnatus
ENSSDUG00000009935puf60b9984.646ENSPEMG00000008820Puf609383.829Peromyscus_maniculatus_bairdii
ENSSDUG00000009935puf60b9984.646ENSPCIG00000020270PUF609983.488Phascolarctos_cinereus
ENSSDUG00000009935puf60b9981.314ENSPFOG00000011118-9978.947Poecilia_formosa
ENSSDUG00000009935puf60b9996.415ENSPFOG00000019217puf60b9894.355Poecilia_formosa
ENSSDUG00000009935puf60b9981.725ENSPLAG00000017025-9178.947Poecilia_latipinna
ENSSDUG00000009935puf60b9996.374ENSPLAG00000010754puf60b10096.374Poecilia_latipinna
ENSSDUG00000009935puf60b9996.415ENSPMEG00000000838puf60b10096.374Poecilia_mexicana
ENSSDUG00000009935puf60b9981.520ENSPMEG00000009767-9179.135Poecilia_mexicana
ENSSDUG00000009935puf60b9998.323ENSPREG00000005440puf60b9997.749Poecilia_reticulata
ENSSDUG00000009935puf60b7982.990ENSPPYG00000018951-9581.755Pongo_abelii
ENSSDUG00000009935puf60b8084.518ENSPCAG00000014837PUF6010083.372Procavia_capensis
ENSSDUG00000009935puf60b9984.444ENSPCOG00000027981PUF609983.457Propithecus_coquereli
ENSSDUG00000009935puf60b9998.485ENSPVAG00000016167PUF608196.203Pteropus_vampyrus
ENSSDUG00000009935puf60b9982.377ENSPNYG00000004273-9981.733Pundamilia_nyererei
ENSSDUG00000009935puf60b9996.565ENSPNYG00000002556puf60b10096.565Pundamilia_nyererei
ENSSDUG00000009935puf60b10080.855ENSPNAG00000019415puf60b8980.448Pygocentrus_nattereri
ENSSDUG00000009935puf60b10085.141ENSPNAG00000019909puf60a9985.542Pygocentrus_nattereri
ENSSDUG00000009935puf60b9984.848ENSRNOG00000009960Puf609384.201Rattus_norvegicus
ENSSDUG00000009935puf60b10083.302ENSRBIG00000035274PUF609983.302Rhinopithecus_bieti
ENSSDUG00000009935puf60b10083.302ENSRROG00000029360PUF609983.302Rhinopithecus_roxellana
ENSSDUG00000009935puf60b10082.004ENSSBOG00000027089PUF609880.891Saimiri_boliviensis_boliviensis
ENSSDUG00000009935puf60b9082.922ENSSHAG00000006668PUF609082.716Sarcophilus_harrisii
ENSSDUG00000009935puf60b10087.037ENSSFOG00015019619puf60b10087.037Scleropages_formosus
ENSSDUG00000009935puf60b9988.776ENSSFOG00015019371puf60a9888.776Scleropages_formosus
ENSSDUG00000009935puf60b79100.000ENSSMAG00000016381puf60b76100.000Scophthalmus_maximus
ENSSDUG00000009935puf60b9999.437ENSSLDG00000024011puf60b10099.431Seriola_lalandi_dorsalis
ENSSDUG00000009935puf60b10079.337ENSSLDG00000007366-9980.263Seriola_lalandi_dorsalis
ENSSDUG00000009935puf60b6679.027ENSSPUG00000013518PUF609279.027Sphenodon_punctatus
ENSSDUG00000009935puf60b9999.051ENSSPAG00000012144puf60b10099.051Stegastes_partitus
ENSSDUG00000009935puf60b9982.245ENSSPAG00000020285-10082.543Stegastes_partitus
ENSSDUG00000009935puf60b9984.444ENSSSCG00000038800PUF609980.334Sus_scrofa
ENSSDUG00000009935puf60b9982.056ENSTGUG00000012797-10081.633Taeniopygia_guttata
ENSSDUG00000009935puf60b9996.998ENSTRUG00000005420puf60b10096.964Takifugu_rubripes
ENSSDUG00000009935puf60b10079.960ENSTRUG00000008843-10079.555Takifugu_rubripes
ENSSDUG00000009935puf60b9995.283ENSTNIG00000013675puf60b9995.283Tetraodon_nigroviridis
ENSSDUG00000009935puf60b9978.234ENSTNIG00000003069-9978.302Tetraodon_nigroviridis
ENSSDUG00000009935puf60b5986.254ENSTBEG00000002751-9786.254Tupaia_belangeri
ENSSDUG00000009935puf60b8063.818ENSTBEG00000001899-10064.672Tupaia_belangeri
ENSSDUG00000009935puf60b9983.030ENSTTRG00000017088PUF6010082.707Tursiops_truncatus
ENSSDUG00000009935puf60b10083.488ENSUAMG00000024917PUF609983.488Ursus_americanus
ENSSDUG00000009935puf60b9981.670ENSUMAG00000000272PUF609378.253Ursus_maritimus
ENSSDUG00000009935puf60b9984.444ENSVVUG00000022527PUF6010084.398Vulpes_vulpes
ENSSDUG00000009935puf60b9982.828ENSXETG00000012469puf609881.903Xenopus_tropicalis
ENSSDUG00000009935puf60b10094.355ENSXCOG00000012355puf60b10094.355Xiphophorus_couchianus
ENSSDUG00000009935puf60b9996.415ENSXMAG00000001862puf60b10096.374Xiphophorus_maculatus
ENSSDUG00000009935puf60b10079.798ENSXMAG00000010507-9879.798Xiphophorus_maculatus

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