EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000009963 (Gene tree)
Gene ID: 111236099
Gene Symbol: dkc1
Alias: fc87a02|fi24a05|fv62a07|wu:fa28f10|wu:fc87a02|wu:fi24a05|wu:fv62a07|zgc:110395
Full Name: dyskerin pseudouridine synthase 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 6093 bases
Position: chrBDQW01000565.1:10376-16468
Accession: 111236099
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000013706	TruB_N	PF01509.18	3.5e-20	1	1
ENSSDUP00000013706	PUA	PF01472.20	1.3e-16	1	1
ENSSDUP00000013706	DKCLD	PF08068.12	3.3e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000013957	-	2308	XM_022764711	ENSSDUP00000013706	502 (aa)	XP_022620432	-

Gene Model

Click here to download ENSSDUG00000009963's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000009963's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000009963	dkc1	85	81.448	ENSG00000130826	DKC1	99	87.805	Homo_sapiens
ENSSDUG00000009963	dkc1	100	86.888	ENSAPOG00000007799	dkc1	96	89.162	Acanthochromis_polyacanthus
ENSSDUG00000009963	dkc1	84	81.193	ENSAMEG00000002776	DKC1	85	81.903	Ailuropoda_melanoleuca
ENSSDUG00000009963	dkc1	96	87.500	ENSACIG00000022614	dkc1	94	88.578	Amphilophus_citrinellus
ENSSDUG00000009963	dkc1	100	88.431	ENSAOCG00000013159	dkc1	91	89.528	Amphiprion_ocellaris
ENSSDUG00000009963	dkc1	100	88.431	ENSAPEG00000002284	dkc1	99	89.485	Amphiprion_percula
ENSSDUG00000009963	dkc1	86	90.745	ENSATEG00000013682	dkc1	93	87.368	Anabas_testudineus
ENSSDUG00000009963	dkc1	89	80.388	ENSACAG00000015600	DKC1	76	82.648	Anolis_carolinensis
ENSSDUG00000009963	dkc1	85	81.222	ENSANAG00000022732	DKC1	85	81.693	Aotus_nancymaae
ENSSDUG00000009963	dkc1	82	93.659	ENSACLG00000015605	dkc1	80	94.402	Astatotilapia_calliptera
ENSSDUG00000009963	dkc1	89	85.934	ENSAMXG00000017108	dkc1	95	83.299	Astyanax_mexicanus
ENSSDUG00000009963	dkc1	85	81.633	ENSBTAG00000013045	DKC1	92	78.556	Bos_taurus
ENSSDUG00000009963	dkc1	81	64.792	WBGene00010478	K01G5.5	89	65.743	Caenorhabditis_elegans
ENSSDUG00000009963	dkc1	85	81.179	ENSCJAG00000004210	DKC1	85	81.651	Callithrix_jacchus
ENSSDUG00000009963	dkc1	87	72.374	ENSCAFG00000009311	-	77	77.665	Canis_familiaris
ENSSDUG00000009963	dkc1	90	79.601	ENSCAFG00000019620	-	77	86.250	Canis_familiaris
ENSSDUG00000009963	dkc1	79	76.768	ENSCAFG00020009379	-	74	76.904	Canis_lupus_dingo
ENSSDUG00000009963	dkc1	90	79.601	ENSCAFG00020008918	-	77	86.250	Canis_lupus_dingo
ENSSDUG00000009963	dkc1	85	81.633	ENSCHIG00000017392	DKC1	92	78.556	Capra_hircus
ENSSDUG00000009963	dkc1	88	80.995	ENSTSYG00000007681	DKC1	85	79.866	Carlito_syrichta
ENSSDUG00000009963	dkc1	75	87.433	ENSCAPG00000003342	DKC1	85	87.433	Cavia_aperea
ENSSDUG00000009963	dkc1	83	85.071	ENSCPOG00000008825	DKC1	90	78.970	Cavia_porcellus
ENSSDUG00000009963	dkc1	85	72.172	ENSCCAG00000027418	DKC1	84	72.540	Cebus_capucinus
ENSSDUG00000009963	dkc1	85	81.222	ENSCATG00000033602	DKC1	85	81.693	Cercocebus_atys
ENSSDUG00000009963	dkc1	85	81.735	ENSCLAG00000000720	DKC1	91	79.140	Chinchilla_lanigera
ENSSDUG00000009963	dkc1	85	81.222	ENSCSAG00000006706	DKC1	85	81.693	Chlorocebus_sabaeus
ENSSDUG00000009963	dkc1	83	85.036	ENSCPBG00000005858	DKC1	90	84.487	Chrysemys_picta_bellii
ENSSDUG00000009963	dkc1	78	80.000	ENSCING00000004599	-	77	79.849	Ciona_intestinalis
ENSSDUG00000009963	dkc1	78	79.847	ENSCSAVG00000010047	-	92	76.513	Ciona_savignyi
ENSSDUG00000009963	dkc1	85	81.222	ENSCANG00000027987	DKC1	85	81.693	Colobus_angolensis_palliatus
ENSSDUG00000009963	dkc1	77	66.067	ENSCGRG00001016789	-	78	67.575	Cricetulus_griseus_chok1gshd
ENSSDUG00000009963	dkc1	83	84.597	ENSCGRG00001014574	-	77	87.374	Cricetulus_griseus_chok1gshd
ENSSDUG00000009963	dkc1	77	65.810	ENSCGRG00000014809	-	77	67.575	Cricetulus_griseus_crigri
ENSSDUG00000009963	dkc1	83	84.597	ENSCGRG00000016075	-	77	87.374	Cricetulus_griseus_crigri
ENSSDUG00000009963	dkc1	93	85.957	ENSCSEG00000012633	dkc1	96	85.870	Cynoglossus_semilaevis
ENSSDUG00000009963	dkc1	87	90.847	ENSCVAG00000010155	dkc1	89	90.749	Cyprinodon_variegatus
ENSSDUG00000009963	dkc1	86	89.631	ENSDARG00000016484	dkc1	95	84.058	Danio_rerio
ENSSDUG00000009963	dkc1	85	81.448	ENSDNOG00000004218	DKC1	85	81.922	Dasypus_novemcinctus
ENSSDUG00000009963	dkc1	59	70.667	ENSDORG00000013566	-	90	73.723	Dipodomys_ordii
ENSSDUG00000009963	dkc1	92	64.859	FBgn0259937	Nop60B	91	66.094	Drosophila_melanogaster
ENSSDUG00000009963	dkc1	79	85.427	ENSETEG00000016095	DKC1	80	86.005	Echinops_telfairi
ENSSDUG00000009963	dkc1	51	59.449	ENSEBUG00000016062	dkc1	98	58.635	Eptatretus_burgeri
ENSSDUG00000009963	dkc1	66	78.419	ENSEBUG00000015962	dkc1	98	82.131	Eptatretus_burgeri
ENSSDUG00000009963	dkc1	88	80.995	ENSEASG00005007484	DKC1	90	78.158	Equus_asinus_asinus
ENSSDUG00000009963	dkc1	88	80.995	ENSECAG00000023524	DKC1	90	78.158	Equus_caballus
ENSSDUG00000009963	dkc1	82	82.270	ENSEEUG00000003323	DKC1	99	82.270	Erinaceus_europaeus
ENSSDUG00000009963	dkc1	89	86.871	ENSELUG00000014538	dkc1	93	86.200	Esox_lucius
ENSSDUG00000009963	dkc1	83	84.834	ENSFCAG00000006577	DKC1	85	81.944	Felis_catus
ENSSDUG00000009963	dkc1	94	76.074	ENSFALG00000011496	DKC1	92	78.395	Ficedula_albicollis
ENSSDUG00000009963	dkc1	94	75.770	ENSFDAG00000002516	DKC1	94	76.715	Fukomys_damarensis
ENSSDUG00000009963	dkc1	89	89.087	ENSFHEG00000004627	dkc1	85	90.654	Fundulus_heteroclitus
ENSSDUG00000009963	dkc1	78	89.258	ENSGMOG00000017277	dkc1	100	89.258	Gadus_morhua
ENSSDUG00000009963	dkc1	86	82.658	ENSGALG00000005054	DKC1	92	78.526	Gallus_gallus
ENSSDUG00000009963	dkc1	90	90.287	ENSGAFG00000011486	dkc1	80	89.032	Gambusia_affinis
ENSSDUG00000009963	dkc1	79	94.724	ENSGACG00000004373	dkc1	96	94.833	Gasterosteus_aculeatus
ENSSDUG00000009963	dkc1	89	81.004	ENSGAGG00000011330	DKC1	91	78.814	Gopherus_agassizii
ENSSDUG00000009963	dkc1	85	81.448	ENSGGOG00000001045	DKC1	85	81.922	Gorilla_gorilla
ENSSDUG00000009963	dkc1	99	88.668	ENSHBUG00000012436	dkc1	99	88.822	Haplochromis_burtoni
ENSSDUG00000009963	dkc1	80	86.284	ENSHGLG00000000649	DKC1	90	78.755	Heterocephalus_glaber_female
ENSSDUG00000009963	dkc1	80	86.284	ENSHGLG00100001153	DKC1	91	78.755	Heterocephalus_glaber_male
ENSSDUG00000009963	dkc1	96	84.330	ENSHCOG00000021099	dkc1	85	89.906	Hippocampus_comes
ENSSDUG00000009963	dkc1	89	85.526	ENSIPUG00000010309	dkc1	95	83.198	Ictalurus_punctatus
ENSSDUG00000009963	dkc1	85	69.820	ENSSTOG00000011904	-	81	70.159	Ictidomys_tridecemlineatus
ENSSDUG00000009963	dkc1	85	81.038	ENSSTOG00000001074	-	90	81.507	Ictidomys_tridecemlineatus
ENSSDUG00000009963	dkc1	85	74.537	ENSSTOG00000020149	-	85	74.312	Ictidomys_tridecemlineatus
ENSSDUG00000009963	dkc1	55	73.646	ENSJJAG00000010086	-	90	73.723	Jaculus_jaculus
ENSSDUG00000009963	dkc1	89	90.179	ENSKMAG00000008010	dkc1	86	90.845	Kryptolebias_marmoratus
ENSSDUG00000009963	dkc1	89	91.091	ENSLBEG00000019122	dkc1	99	89.375	Labrus_bergylta
ENSSDUG00000009963	dkc1	89	81.637	ENSLACG00000014025	DKC1	90	88.550	Latimeria_chalumnae
ENSSDUG00000009963	dkc1	90	85.652	ENSLOCG00000013713	dkc1	99	84.486	Lepisosteus_oculatus
ENSSDUG00000009963	dkc1	85	81.306	ENSLAFG00000000221	DKC1	90	79.399	Loxodonta_africana
ENSSDUG00000009963	dkc1	85	81.448	ENSMFAG00000032398	DKC1	73	81.922	Macaca_fascicularis
ENSSDUG00000009963	dkc1	85	81.222	ENSMMUG00000005768	DKC1	85	81.693	Macaca_mulatta
ENSSDUG00000009963	dkc1	85	81.222	ENSMNEG00000034503	DKC1	85	81.693	Macaca_nemestrina
ENSSDUG00000009963	dkc1	85	81.222	ENSMLEG00000034422	DKC1	85	81.693	Mandrillus_leucophaeus
ENSSDUG00000009963	dkc1	80	97.022	ENSMAMG00000005427	dkc1	90	97.022	Mastacembelus_armatus
ENSSDUG00000009963	dkc1	99	88.867	ENSMZEG00005014503	dkc1	99	89.022	Maylandia_zebra
ENSSDUG00000009963	dkc1	76	86.118	ENSMGAG00000009238	DKC1	93	81.265	Meleagris_gallopavo
ENSSDUG00000009963	dkc1	59	70.333	ENSMAUG00000016454	-	90	72.993	Mesocricetus_auratus
ENSSDUG00000009963	dkc1	85	82.135	ENSMICG00000038751	-	81	84.691	Microcebus_murinus
ENSSDUG00000009963	dkc1	78	73.284	ENSMICG00000002818	-	99	76.923	Microcebus_murinus
ENSSDUG00000009963	dkc1	59	67.667	ENSMOCG00000001169	-	90	70.438	Microtus_ochrogaster
ENSSDUG00000009963	dkc1	81	93.643	ENSMMOG00000020348	dkc1	85	94.148	Mola_mola
ENSSDUG00000009963	dkc1	91	79.476	ENSMODG00000009243	DKC1	74	83.924	Monodelphis_domestica
ENSSDUG00000009963	dkc1	98	88.710	ENSMALG00000009454	dkc1	94	89.189	Monopterus_albus
ENSSDUG00000009963	dkc1	85	69.799	MGP_CAROLIEiJ_G0033191	Dkc1	84	84.553	Mus_caroli
ENSSDUG00000009963	dkc1	89	78.355	ENSMUSG00000031403	Dkc1	86	80.734	Mus_musculus
ENSSDUG00000009963	dkc1	83	83.886	MGP_PahariEiJ_G0031735	Dkc1	77	86.869	Mus_pahari
ENSSDUG00000009963	dkc1	89	78.355	MGP_SPRETEiJ_G0034351	Dkc1	85	80.734	Mus_spretus
ENSSDUG00000009963	dkc1	90	78.462	ENSMPUG00000016136	DKC1	74	86.000	Mustela_putorius_furo
ENSSDUG00000009963	dkc1	84	80.516	ENSMLUG00000011918	DKC1	91	74.160	Myotis_lucifugus
ENSSDUG00000009963	dkc1	59	71.237	ENSNGAG00000015724	-	90	73.723	Nannospalax_galili
ENSSDUG00000009963	dkc1	82	94.390	ENSNBRG00000005638	dkc1	79	94.911	Neolamprologus_brichardi
ENSSDUG00000009963	dkc1	85	81.222	ENSNLEG00000014323	DKC1	85	81.693	Nomascus_leucogenys
ENSSDUG00000009963	dkc1	80	83.292	ENSMEUG00000001066	DKC1	88	83.500	Notamacropus_eugenii
ENSSDUG00000009963	dkc1	69	79.598	ENSOPRG00000005248	DKC1	69	80.000	Ochotona_princeps
ENSSDUG00000009963	dkc1	59	70.667	ENSODEG00000000549	-	90	73.358	Octodon_degus
ENSSDUG00000009963	dkc1	82	86.585	ENSODEG00000011816	-	89	80.828	Octodon_degus
ENSSDUG00000009963	dkc1	97	88.115	ENSONIG00000013889	dkc1	97	88.548	Oreochromis_niloticus
ENSSDUG00000009963	dkc1	67	58.774	ENSOANG00000022295	-	100	59.557	Ornithorhynchus_anatinus
ENSSDUG00000009963	dkc1	94	78.557	ENSOANG00000008713	-	99	79.012	Ornithorhynchus_anatinus
ENSSDUG00000009963	dkc1	85	81.093	ENSOCUG00000012646	DKC1	85	81.465	Oryctolagus_cuniculus
ENSSDUG00000009963	dkc1	89	86.667	ENSORLG00000018748	dkc1	89	86.283	Oryzias_latipes
ENSSDUG00000009963	dkc1	88	89.013	ENSOMEG00000005786	dkc1	81	92.797	Oryzias_melastigma
ENSSDUG00000009963	dkc1	89	78.013	ENSOGAG00000003399	DKC1	91	76.987	Otolemur_garnettii
ENSSDUG00000009963	dkc1	85	81.406	ENSOARG00000003047	DKC1	92	78.344	Ovis_aries
ENSSDUG00000009963	dkc1	86	79.955	ENSPPAG00000023820	DKC1	85	82.151	Pan_paniscus
ENSSDUG00000009963	dkc1	83	84.834	ENSPPRG00000009104	DKC1	85	81.944	Panthera_pardus
ENSSDUG00000009963	dkc1	84	82.783	ENSPTIG00000017469	DKC1	85	83.294	Panthera_tigris_altaica
ENSSDUG00000009963	dkc1	96	76.923	ENSPTRG00000043416	-	81	77.618	Pan_troglodytes
ENSSDUG00000009963	dkc1	85	81.448	ENSPTRG00000022449	DKC1	85	81.922	Pan_troglodytes
ENSSDUG00000009963	dkc1	85	81.222	ENSPANG00000011978	DKC1	85	81.693	Papio_anubis
ENSSDUG00000009963	dkc1	89	85.590	ENSPKIG00000008443	dkc1	91	86.713	Paramormyrops_kingsleyae
ENSSDUG00000009963	dkc1	71	89.944	ENSPSIG00000013765	DKC1	86	89.944	Pelodiscus_sinensis
ENSSDUG00000009963	dkc1	92	76.458	ENSPMGG00000004097	dkc1	89	77.320	Periophthalmus_magnuspinnatus
ENSSDUG00000009963	dkc1	69	85.135	ENSPEMG00000013348	Dkc1	82	86.391	Peromyscus_maniculatus_bairdii
ENSSDUG00000009963	dkc1	80	87.282	ENSPCIG00000016706	DKC1	67	88.131	Phascolarctos_cinereus
ENSSDUG00000009963	dkc1	90	90.287	ENSPFOG00000018653	dkc1	93	89.032	Poecilia_formosa
ENSSDUG00000009963	dkc1	90	90.287	ENSPLAG00000003272	dkc1	84	89.032	Poecilia_latipinna
ENSSDUG00000009963	dkc1	90	90.287	ENSPMEG00000010413	dkc1	93	89.247	Poecilia_mexicana
ENSSDUG00000009963	dkc1	90	90.287	ENSPREG00000004100	dkc1	84	90.465	Poecilia_reticulata
ENSSDUG00000009963	dkc1	85	81.448	ENSPPYG00000020892	DKC1	86	81.922	Pongo_abelii
ENSSDUG00000009963	dkc1	75	86.096	ENSPCAG00000015034	DKC1	73	86.096	Procavia_capensis
ENSSDUG00000009963	dkc1	85	79.638	ENSPCOG00000026874	DKC1	85	80.320	Propithecus_coquereli
ENSSDUG00000009963	dkc1	85	82.367	ENSPVAG00000009222	DKC1	85	82.864	Pteropus_vampyrus
ENSSDUG00000009963	dkc1	95	84.318	ENSPNYG00000020063	dkc1	94	84.388	Pundamilia_nyererei
ENSSDUG00000009963	dkc1	90	84.279	ENSPNAG00000005780	dkc1	94	82.979	Pygocentrus_nattereri
ENSSDUG00000009963	dkc1	95	74.395	ENSRNOG00000055562	Dkc1	91	76.119	Rattus_norvegicus
ENSSDUG00000009963	dkc1	85	81.222	ENSRBIG00000028457	DKC1	73	81.693	Rhinopithecus_bieti
ENSSDUG00000009963	dkc1	85	81.222	ENSRROG00000044780	DKC1	85	81.693	Rhinopithecus_roxellana
ENSSDUG00000009963	dkc1	76	71.802	YLR175W	-	85	68.523	Saccharomyces_cerevisiae
ENSSDUG00000009963	dkc1	85	81.448	ENSSBOG00000033746	DKC1	85	81.922	Saimiri_boliviensis_boliviensis
ENSSDUG00000009963	dkc1	90	79.867	ENSSHAG00000002463	DKC1	92	83.141	Sarcophilus_harrisii
ENSSDUG00000009963	dkc1	89	84.783	ENSSFOG00015009585	dkc1	85	86.697	Scleropages_formosus
ENSSDUG00000009963	dkc1	89	91.537	ENSSMAG00000002552	dkc1	96	88.187	Scophthalmus_maximus
ENSSDUG00000009963	dkc1	96	95.833	ENSSLDG00000019342	dkc1	97	95.833	Seriola_lalandi_dorsalis
ENSSDUG00000009963	dkc1	84	79.196	ENSSARG00000001822	DKC1	87	77.650	Sorex_araneus
ENSSDUG00000009963	dkc1	88	80.455	ENSSPUG00000018907	DKC1	95	76.389	Sphenodon_punctatus
ENSSDUG00000009963	dkc1	93	88.273	ENSSPAG00000002585	dkc1	86	90.749	Stegastes_partitus
ENSSDUG00000009963	dkc1	83	84.286	ENSSSCG00000012823	DKC1	85	85.432	Sus_scrofa
ENSSDUG00000009963	dkc1	77	86.041	ENSTGUG00000006781	DKC1	95	80.092	Taeniopygia_guttata
ENSSDUG00000009963	dkc1	97	86.037	ENSTRUG00000004413	dkc1	93	88.387	Takifugu_rubripes
ENSSDUG00000009963	dkc1	97	69.261	ENSTNIG00000002582	dkc1	93	68.880	Tetraodon_nigroviridis
ENSSDUG00000009963	dkc1	56	84.698	ENSTBEG00000011262	DKC1	83	81.000	Tupaia_belangeri
ENSSDUG00000009963	dkc1	55	87.365	ENSTTRG00000008089	DKC1	55	87.365	Tursiops_truncatus
ENSSDUG00000009963	dkc1	88	80.769	ENSUAMG00000022721	DKC1	84	86.750	Ursus_americanus
ENSSDUG00000009963	dkc1	88	80.317	ENSUMAG00000016899	DKC1	97	85.139	Ursus_maritimus
ENSSDUG00000009963	dkc1	84	69.762	ENSVVUG00000021671	-	77	70.024	Vulpes_vulpes
ENSSDUG00000009963	dkc1	90	78.384	ENSVVUG00000020734	-	70	84.767	Vulpes_vulpes
ENSSDUG00000009963	dkc1	93	79.362	ENSXETG00000032517	DKC1	84	85.106	Xenopus_tropicalis
ENSSDUG00000009963	dkc1	87	89.703	ENSXCOG00000005498	dkc1	97	89.207	Xiphophorus_couchianus
ENSSDUG00000009963	dkc1	90	90.066	ENSXMAG00000004919	dkc1	91	90.308	Xiphophorus_maculatus