EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000010306 (Gene tree)
Gene ID: 111223795
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 16121 bases
Position: chrBDQW01000116.1:145907-162027
Accession: 111223795
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000014247	XRN_N	PF03159.18	1.7e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000014517	-	4707	XM_022748070	ENSSDUP00000014247	1568 (aa)	XP_022603791	-

Gene Model

Click here to download ENSSDUG00000010306's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03008	Ribosome biogenesis in eukaryotes	KEGG
sdu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000010306's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000010306	xrn1	97	72.019	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSSDUG00000010306	xrn1	97	89.655	ENSAPOG00000000622	xrn1	94	89.429	Acanthochromis_polyacanthus
ENSSDUG00000010306	xrn1	92	72.159	ENSAMEG00000012538	XRN1	88	72.159	Ailuropoda_melanoleuca
ENSSDUG00000010306	xrn1	97	90.640	ENSACIG00000001057	xrn1	91	90.640	Amphilophus_citrinellus
ENSSDUG00000010306	xrn1	97	92.504	ENSAOCG00000014097	xrn1	92	90.040	Amphiprion_ocellaris
ENSSDUG00000010306	xrn1	97	91.961	ENSAPEG00000006620	xrn1	91	92.069	Amphiprion_percula
ENSSDUG00000010306	xrn1	100	77.326	ENSATEG00000009752	xrn1	100	77.326	Anabas_testudineus
ENSSDUG00000010306	xrn1	95	72.135	ENSAPLG00000004905	XRN1	88	71.641	Anas_platyrhynchos
ENSSDUG00000010306	xrn1	97	71.590	ENSACAG00000004985	XRN1	85	71.590	Anolis_carolinensis
ENSSDUG00000010306	xrn1	97	72.417	ENSANAG00000029013	XRN1	99	73.633	Aotus_nancymaae
ENSSDUG00000010306	xrn1	97	90.410	ENSACLG00000004806	xrn1	89	90.410	Astatotilapia_calliptera
ENSSDUG00000010306	xrn1	98	77.414	ENSAMXG00000019370	xrn1	95	98.058	Astyanax_mexicanus
ENSSDUG00000010306	xrn1	97	72.172	ENSBTAG00000011524	XRN1	90	72.172	Bos_taurus
ENSSDUG00000010306	xrn1	76	37.957	WBGene00012730	xrn-1	80	37.538	Caenorhabditis_elegans
ENSSDUG00000010306	xrn1	97	72.042	ENSCJAG00000001872	XRN1	90	72.195	Callithrix_jacchus
ENSSDUG00000010306	xrn1	92	72.986	ENSCAFG00000007783	XRN1	91	72.861	Canis_familiaris
ENSSDUG00000010306	xrn1	92	72.986	ENSCAFG00020009120	XRN1	99	77.093	Canis_lupus_dingo
ENSSDUG00000010306	xrn1	95	72.254	ENSCHIG00000019192	XRN1	86	72.254	Capra_hircus
ENSSDUG00000010306	xrn1	97	71.857	ENSTSYG00000002705	XRN1	91	71.928	Carlito_syrichta
ENSSDUG00000010306	xrn1	54	86.047	ENSCAPG00000004604	-	94	86.047	Cavia_aperea
ENSSDUG00000010306	xrn1	97	72.101	ENSCCAG00000034800	XRN1	99	79.048	Cebus_capucinus
ENSSDUG00000010306	xrn1	91	72.078	ENSCATG00000041794	XRN1	93	72.231	Cercocebus_atys
ENSSDUG00000010306	xrn1	97	72.123	ENSCLAG00000001451	XRN1	99	79.272	Chinchilla_lanigera
ENSSDUG00000010306	xrn1	91	72.101	ENSCSAG00000011265	XRN1	90	72.254	Chlorocebus_sabaeus
ENSSDUG00000010306	xrn1	59	94.805	ENSCHOG00000013961	-	54	95.833	Choloepus_hoffmanni
ENSSDUG00000010306	xrn1	75	50.504	ENSCSAVG00000008584	-	93	50.302	Ciona_savignyi
ENSSDUG00000010306	xrn1	91	72.182	ENSCANG00000037495	XRN1	99	79.048	Colobus_angolensis_palliatus
ENSSDUG00000010306	xrn1	97	72.136	ENSCGRG00001019411	Xrn1	99	79.114	Cricetulus_griseus_chok1gshd
ENSSDUG00000010306	xrn1	97	72.136	ENSCGRG00000012464	Xrn1	99	79.114	Cricetulus_griseus_crigri
ENSSDUG00000010306	xrn1	98	81.296	ENSCSEG00000021285	xrn1	94	99.038	Cynoglossus_semilaevis
ENSSDUG00000010306	xrn1	72	85.080	ENSCVAG00000013089	xrn1	99	86.679	Cyprinodon_variegatus
ENSSDUG00000010306	xrn1	97	81.633	ENSDARG00000091652	xrn1	98	85.201	Danio_rerio
ENSSDUG00000010306	xrn1	97	72.484	ENSDORG00000013833	Xrn1	89	72.557	Dipodomys_ordii
ENSSDUG00000010306	xrn1	74	40.722	FBgn0020261	pcm	71	40.638	Drosophila_melanogaster
ENSSDUG00000010306	xrn1	81	69.369	ENSETEG00000003978	XRN1	77	69.421	Echinops_telfairi
ENSSDUG00000010306	xrn1	91	72.742	ENSEASG00005002687	XRN1	99	79.365	Equus_asinus_asinus
ENSSDUG00000010306	xrn1	91	72.661	ENSECAG00000008301	XRN1	90	72.661	Equus_caballus
ENSSDUG00000010306	xrn1	82	72.456	ENSEEUG00000011323	XRN1	77	72.456	Erinaceus_europaeus
ENSSDUG00000010306	xrn1	98	81.286	ENSELUG00000000169	xrn1	89	81.367	Esox_lucius
ENSSDUG00000010306	xrn1	97	67.805	ENSFCAG00000027589	XRN1	99	82.237	Felis_catus
ENSSDUG00000010306	xrn1	99	71.361	ENSFALG00000007021	XRN1	87	70.965	Ficedula_albicollis
ENSSDUG00000010306	xrn1	97	71.776	ENSFDAG00000020494	XRN1	99	79.589	Fukomys_damarensis
ENSSDUG00000010306	xrn1	93	74.733	ENSGMOG00000006396	xrn1	84	75.473	Gadus_morhua
ENSSDUG00000010306	xrn1	97	72.419	ENSGALG00000002706	XRN1	86	72.119	Gallus_gallus
ENSSDUG00000010306	xrn1	97	89.828	ENSGACG00000014328	xrn1	89	89.828	Gasterosteus_aculeatus
ENSSDUG00000010306	xrn1	88	71.532	ENSGAGG00000017535	XRN1	84	71.486	Gopherus_agassizii
ENSSDUG00000010306	xrn1	97	72.101	ENSGGOG00000008047	XRN1	90	72.254	Gorilla_gorilla
ENSSDUG00000010306	xrn1	98	88.609	ENSHBUG00000005908	xrn1	95	85.805	Haplochromis_burtoni
ENSSDUG00000010306	xrn1	97	72.019	ENSHGLG00000014476	XRN1	99	78.956	Heterocephalus_glaber_female
ENSSDUG00000010306	xrn1	97	72.019	ENSHGLG00100015130	XRN1	99	78.956	Heterocephalus_glaber_male
ENSSDUG00000010306	xrn1	100	72.140	ENSHCOG00000014062	xrn1	99	71.833	Hippocampus_comes
ENSSDUG00000010306	xrn1	97	80.115	ENSIPUG00000015229	xrn1	90	80.131	Ictalurus_punctatus
ENSSDUG00000010306	xrn1	97	72.557	ENSSTOG00000013552	XRN1	99	78.889	Ictidomys_tridecemlineatus
ENSSDUG00000010306	xrn1	93	71.867	ENSJJAG00000010863	Xrn1	99	78.418	Jaculus_jaculus
ENSSDUG00000010306	xrn1	97	85.185	ENSKMAG00000021356	xrn1	95	86.287	Kryptolebias_marmoratus
ENSSDUG00000010306	xrn1	97	88.825	ENSLBEG00000018656	xrn1	97	100.000	Labrus_bergylta
ENSSDUG00000010306	xrn1	97	72.263	ENSLACG00000009020	XRN1	88	72.263	Latimeria_chalumnae
ENSSDUG00000010306	xrn1	97	76.992	ENSLOCG00000007944	xrn1	90	76.799	Lepisosteus_oculatus
ENSSDUG00000010306	xrn1	67	72.805	ENSLAFG00000015426	XRN1	99	72.872	Loxodonta_africana
ENSSDUG00000010306	xrn1	91	72.254	ENSMFAG00000032599	XRN1	93	72.254	Macaca_fascicularis
ENSSDUG00000010306	xrn1	91	72.101	ENSMMUG00000014038	XRN1	93	72.254	Macaca_mulatta
ENSSDUG00000010306	xrn1	91	72.335	ENSMNEG00000034217	XRN1	90	72.335	Macaca_nemestrina
ENSSDUG00000010306	xrn1	100	76.801	ENSMAMG00000013219	xrn1	92	90.254	Mastacembelus_armatus
ENSSDUG00000010306	xrn1	97	90.410	ENSMZEG00005015099	xrn1	89	90.410	Maylandia_zebra
ENSSDUG00000010306	xrn1	96	70.468	ENSMGAG00000006333	XRN1	88	70.246	Meleagris_gallopavo
ENSSDUG00000010306	xrn1	97	72.476	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSSDUG00000010306	xrn1	62	79.022	ENSMOCG00000008665	Xrn1	99	79.239	Microtus_ochrogaster
ENSSDUG00000010306	xrn1	95	73.350	ENSMODG00000021236	XRN1	89	71.870	Monodelphis_domestica
ENSSDUG00000010306	xrn1	97	85.738	ENSMALG00000004098	xrn1	90	85.902	Monopterus_albus
ENSSDUG00000010306	xrn1	97	67.951	MGP_CAROLIEiJ_G0032535	Xrn1	100	92.500	Mus_caroli
ENSSDUG00000010306	xrn1	97	72.231	ENSMUSG00000032410	Xrn1	100	92.500	Mus_musculus
ENSSDUG00000010306	xrn1	97	72.327	MGP_PahariEiJ_G0015404	Xrn1	100	92.500	Mus_pahari
ENSSDUG00000010306	xrn1	97	72.150	MGP_SPRETEiJ_G0033678	Xrn1	100	92.500	Mus_spretus
ENSSDUG00000010306	xrn1	92	72.742	ENSMPUG00000012040	XRN1	91	72.742	Mustela_putorius_furo
ENSSDUG00000010306	xrn1	95	72.254	ENSMLUG00000016885	XRN1	86	72.254	Myotis_lucifugus
ENSSDUG00000010306	xrn1	62	75.197	ENSNGAG00000023964	Xrn1	99	75.277	Nannospalax_galili
ENSSDUG00000010306	xrn1	91	71.938	ENSNLEG00000004726	XRN1	90	72.091	Nomascus_leucogenys
ENSSDUG00000010306	xrn1	70	96.907	ENSMEUG00000014473	-	56	97.087	Notamacropus_eugenii
ENSSDUG00000010306	xrn1	59	68.521	ENSOPRG00000007337	-	55	68.521	Ochotona_princeps
ENSSDUG00000010306	xrn1	97	90.738	ENSONIG00000016673	xrn1	91	90.738	Oreochromis_niloticus
ENSSDUG00000010306	xrn1	88	69.364	ENSOANG00000006735	XRN1	89	69.399	Ornithorhynchus_anatinus
ENSSDUG00000010306	xrn1	97	72.801	ENSOCUG00000001861	XRN1	88	72.313	Oryctolagus_cuniculus
ENSSDUG00000010306	xrn1	97	87.039	ENSORLG00000013005	xrn1	92	86.148	Oryzias_latipes
ENSSDUG00000010306	xrn1	98	86.803	ENSORLG00020005559	xrn1	94	86.803	Oryzias_latipes_hni
ENSSDUG00000010306	xrn1	97	86.957	ENSORLG00015022523	xrn1	92	86.639	Oryzias_latipes_hsok
ENSSDUG00000010306	xrn1	97	87.941	ENSOMEG00000015397	xrn1	90	87.941	Oryzias_melastigma
ENSSDUG00000010306	xrn1	97	70.033	ENSOGAG00000000170	XRN1	91	70.033	Otolemur_garnettii
ENSSDUG00000010306	xrn1	97	72.276	ENSOARG00000006343	XRN1	90	72.276	Ovis_aries
ENSSDUG00000010306	xrn1	97	72.101	ENSPPAG00000010180	XRN1	90	72.254	Pan_paniscus
ENSSDUG00000010306	xrn1	97	73.008	ENSPPRG00000007125	XRN1	90	73.008	Panthera_pardus
ENSSDUG00000010306	xrn1	97	73.089	ENSPTIG00000021081	XRN1	90	73.089	Panthera_tigris_altaica
ENSSDUG00000010306	xrn1	97	72.101	ENSPTRG00000015482	XRN1	90	72.254	Pan_troglodytes
ENSSDUG00000010306	xrn1	97	72.101	ENSPANG00000010638	XRN1	93	72.254	Papio_anubis
ENSSDUG00000010306	xrn1	97	71.337	ENSPSIG00000018050	XRN1	88	71.337	Pelodiscus_sinensis
ENSSDUG00000010306	xrn1	62	87.739	ENSPMGG00000002648	xrn1	99	86.145	Periophthalmus_magnuspinnatus
ENSSDUG00000010306	xrn1	62	79.022	ENSPEMG00000020610	Xrn1	99	79.206	Peromyscus_maniculatus_bairdii
ENSSDUG00000010306	xrn1	70	48.526	ENSPMAG00000002975	xrn1	99	48.441	Petromyzon_marinus
ENSSDUG00000010306	xrn1	96	73.517	ENSPCIG00000028735	XRN1	99	78.855	Phascolarctos_cinereus
ENSSDUG00000010306	xrn1	86	88.235	ENSPFOG00000013932	xrn1	87	88.725	Poecilia_formosa
ENSSDUG00000010306	xrn1	86	88.925	ENSPLAG00000021653	xrn1	87	88.925	Poecilia_latipinna
ENSSDUG00000010306	xrn1	84	88.380	ENSPMEG00000003076	xrn1	84	88.625	Poecilia_mexicana
ENSSDUG00000010306	xrn1	97	87.307	ENSPREG00000021147	xrn1	90	87.876	Poecilia_reticulata
ENSSDUG00000010306	xrn1	99	72.263	ENSPPYG00000014172	XRN1	93	72.417	Pongo_abelii
ENSSDUG00000010306	xrn1	82	67.223	ENSPCAG00000005638	XRN1	84	67.056	Procavia_capensis
ENSSDUG00000010306	xrn1	97	72.068	ENSPCOG00000013089	XRN1	99	78.730	Propithecus_coquereli
ENSSDUG00000010306	xrn1	85	70.035	ENSPVAG00000016265	XRN1	79	70.035	Pteropus_vampyrus
ENSSDUG00000010306	xrn1	97	90.887	ENSPNYG00000010570	xrn1	93	89.060	Pundamilia_nyererei
ENSSDUG00000010306	xrn1	97	77.669	ENSPNAG00000023531	xrn1	90	77.732	Pygocentrus_nattereri
ENSSDUG00000010306	xrn1	97	71.974	ENSRNOG00000042951	Xrn1	88	71.974	Rattus_norvegicus
ENSSDUG00000010306	xrn1	91	72.019	ENSRBIG00000041227	XRN1	90	72.172	Rhinopithecus_bieti
ENSSDUG00000010306	xrn1	75	53.261	YGL173C	XRN1	75	53.261	Saccharomyces_cerevisiae
ENSSDUG00000010306	xrn1	97	72.182	ENSSBOG00000029561	XRN1	90	71.867	Saimiri_boliviensis_boliviensis
ENSSDUG00000010306	xrn1	94	72.611	ENSSHAG00000016207	XRN1	89	71.547	Sarcophilus_harrisii
ENSSDUG00000010306	xrn1	97	78.753	ENSSFOG00015024211	xrn1	90	78.753	Scleropages_formosus
ENSSDUG00000010306	xrn1	97	90.367	ENSSMAG00000016534	xrn1	89	90.367	Scophthalmus_maximus
ENSSDUG00000010306	xrn1	98	98.044	ENSSLDG00000021543	xrn1	100	89.082	Seriola_lalandi_dorsalis
ENSSDUG00000010306	xrn1	65	67.662	ENSSARG00000007741	-	75	67.662	Sorex_araneus
ENSSDUG00000010306	xrn1	97	72.074	ENSTGUG00000008498	XRN1	90	71.671	Taeniopygia_guttata
ENSSDUG00000010306	xrn1	97	84.327	ENSTRUG00000004895	xrn1	96	87.179	Takifugu_rubripes
ENSSDUG00000010306	xrn1	98	83.293	ENSTNIG00000017615	xrn1	93	83.034	Tetraodon_nigroviridis
ENSSDUG00000010306	xrn1	71	85.484	ENSTBEG00000003256	XRN1	76	83.418	Tupaia_belangeri
ENSSDUG00000010306	xrn1	77	70.220	ENSTTRG00000012914	XRN1	90	70.220	Tursiops_truncatus
ENSSDUG00000010306	xrn1	91	70.627	ENSUAMG00000001608	XRN1	99	75.556	Ursus_americanus
ENSSDUG00000010306	xrn1	91	72.498	ENSUMAG00000013625	XRN1	90	72.498	Ursus_maritimus
ENSSDUG00000010306	xrn1	97	69.976	ENSVPAG00000004690	XRN1	91	69.976	Vicugna_pacos
ENSSDUG00000010306	xrn1	91	72.986	ENSVVUG00000024461	XRN1	99	79.524	Vulpes_vulpes
ENSSDUG00000010306	xrn1	97	71.498	ENSXETG00000000619	xrn1	99	86.089	Xenopus_tropicalis
ENSSDUG00000010306	xrn1	100	84.851	ENSXCOG00000007917	xrn1	94	85.322	Xiphophorus_couchianus
ENSSDUG00000010306	xrn1	100	76.861	ENSXMAG00000018320	xrn1	100	77.047	Xiphophorus_maculatus