EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000010343 (Gene tree)
Gene ID: 111222713
Gene Symbol: lig4
Alias: zgc:165595
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 6873 bases
Position: chrBDQW01000105.1:1440826-1447698
Accession: 111222713
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000014199	RNA_ligase	PF09414.10	3.2e-10	1	1
ENSSDUP00000014203	RNA_ligase	PF09414.10	3.2e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000014469	-	5435	XM_022746530	ENSSDUP00000014199	914 (aa)	XP_022602251	UPI000BBEDEBA
ENSSDUT00000014473	-	5344	-	ENSSDUP00000014203	914 (aa)	-	UPI000BBEDEBA

Gene Model

Click here to download ENSSDUG00000010343's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000010343's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000010343	lig4	98	67.295	ENSG00000174405	LIG4	100	67.773	Homo_sapiens
ENSSDUG00000010343	lig4	100	89.059	ENSAPOG00000000866	lig4	100	88.840	Acanthochromis_polyacanthus
ENSSDUG00000010343	lig4	98	64.856	ENSAMEG00000019685	LIG4	98	64.856	Ailuropoda_melanoleuca
ENSSDUG00000010343	lig4	99	88.828	ENSACIG00000018309	lig4	100	88.512	Amphilophus_citrinellus
ENSSDUG00000010343	lig4	100	89.497	ENSAOCG00000011768	lig4	100	89.278	Amphiprion_ocellaris
ENSSDUG00000010343	lig4	100	89.606	ENSAPEG00000017815	lig4	100	89.387	Amphiprion_percula
ENSSDUG00000010343	lig4	100	89.716	ENSATEG00000005583	lig4	100	89.716	Anabas_testudineus
ENSSDUG00000010343	lig4	96	67.045	ENSAPLG00000001673	LIG4	99	67.045	Anas_platyrhynchos
ENSSDUG00000010343	lig4	99	67.070	ENSACAG00000014566	LIG4	99	67.070	Anolis_carolinensis
ENSSDUG00000010343	lig4	98	66.630	ENSANAG00000012446	LIG4	99	66.630	Aotus_nancymaae
ENSSDUG00000010343	lig4	99	87.842	ENSACLG00000027051	lig4	100	87.527	Astatotilapia_calliptera
ENSSDUG00000010343	lig4	100	78.804	ENSAMXG00000008192	lig4	95	78.804	Astyanax_mexicanus
ENSSDUG00000010343	lig4	98	65.854	ENSBTAG00000015868	LIG4	99	65.854	Bos_taurus
ENSSDUG00000010343	lig4	98	66.075	ENSCJAG00000014689	LIG4	99	66.075	Callithrix_jacchus
ENSSDUG00000010343	lig4	98	65.521	ENSCAFG00000006031	LIG4	99	65.521	Canis_familiaris
ENSSDUG00000010343	lig4	98	65.521	ENSCAFG00020021230	LIG4	99	65.521	Canis_lupus_dingo
ENSSDUG00000010343	lig4	98	65.854	ENSCHIG00000001019	LIG4	99	65.854	Capra_hircus
ENSSDUG00000010343	lig4	98	65.078	ENSCAPG00000006284	LIG4	99	65.078	Cavia_aperea
ENSSDUG00000010343	lig4	98	64.967	ENSCPOG00000014266	LIG4	99	64.967	Cavia_porcellus
ENSSDUG00000010343	lig4	98	66.519	ENSCCAG00000019971	LIG4	99	66.519	Cebus_capucinus
ENSSDUG00000010343	lig4	98	66.630	ENSCATG00000021075	LIG4	99	66.630	Cercocebus_atys
ENSSDUG00000010343	lig4	99	65.639	ENSCLAG00000003376	LIG4	99	65.639	Chinchilla_lanigera
ENSSDUG00000010343	lig4	98	66.519	ENSCSAG00000000211	LIG4	99	66.519	Chlorocebus_sabaeus
ENSSDUG00000010343	lig4	98	68.625	ENSCPBG00000023291	LIG4	100	67.904	Chrysemys_picta_bellii
ENSSDUG00000010343	lig4	69	46.614	ENSCING00000009536	-	97	46.614	Ciona_intestinalis
ENSSDUG00000010343	lig4	83	44.474	ENSCSAVG00000010336	-	98	44.474	Ciona_savignyi
ENSSDUG00000010343	lig4	98	66.408	ENSCANG00000005805	LIG4	99	66.408	Colobus_angolensis_palliatus
ENSSDUG00000010343	lig4	98	65.781	ENSCGRG00001012072	Lig4	99	65.670	Cricetulus_griseus_chok1gshd
ENSSDUG00000010343	lig4	98	65.781	ENSCGRG00000013417	Lig4	99	65.670	Cricetulus_griseus_crigri
ENSSDUG00000010343	lig4	97	86.420	ENSCSEG00000013905	lig4	96	85.971	Cynoglossus_semilaevis
ENSSDUG00000010343	lig4	100	87.978	ENSCVAG00000007896	lig4	100	87.869	Cyprinodon_variegatus
ENSSDUG00000010343	lig4	100	78.556	ENSDARG00000060620	lig4	100	78.556	Danio_rerio
ENSSDUG00000010343	lig4	98	65.338	ENSDNOG00000000513	LIG4	99	65.338	Dasypus_novemcinctus
ENSSDUG00000010343	lig4	98	66.630	ENSDORG00000027303	Lig4	99	66.630	Dipodomys_ordii
ENSSDUG00000010343	lig4	92	30.430	FBgn0030506	Lig4	93	30.430	Drosophila_melanogaster
ENSSDUG00000010343	lig4	98	63.525	ENSETEG00000015563	LIG4	100	64.191	Echinops_telfairi
ENSSDUG00000010343	lig4	99	43.783	ENSEBUG00000014243	lig4	99	43.783	Eptatretus_burgeri
ENSSDUG00000010343	lig4	98	65.410	ENSEASG00005022073	LIG4	99	65.410	Equus_asinus_asinus
ENSSDUG00000010343	lig4	98	65.299	ENSECAG00000003257	LIG4	99	65.299	Equus_caballus
ENSSDUG00000010343	lig4	98	83.278	ENSELUG00000006787	lig4	99	83.278	Esox_lucius
ENSSDUG00000010343	lig4	98	64.856	ENSFCAG00000031985	LIG4	99	64.856	Felis_catus
ENSSDUG00000010343	lig4	88	68.681	ENSFALG00000004214	LIG4	98	68.395	Ficedula_albicollis
ENSSDUG00000010343	lig4	98	64.856	ENSFDAG00000008973	LIG4	99	64.856	Fukomys_damarensis
ENSSDUG00000010343	lig4	100	87.418	ENSFHEG00000007398	lig4	91	87.418	Fundulus_heteroclitus
ENSSDUG00000010343	lig4	85	78.306	ENSGMOG00000012843	lig4	99	78.306	Gadus_morhua
ENSSDUG00000010343	lig4	100	65.758	ENSGALG00000016854	LIG4	100	65.758	Gallus_gallus
ENSSDUG00000010343	lig4	99	87.418	ENSGAFG00000019779	lig4	96	87.637	Gambusia_affinis
ENSSDUG00000010343	lig4	100	84.902	ENSGACG00000014135	lig4	99	84.945	Gasterosteus_aculeatus
ENSSDUG00000010343	lig4	98	67.073	ENSGGOG00000027771	LIG4	99	67.073	Gorilla_gorilla
ENSSDUG00000010343	lig4	99	87.623	ENSHBUG00000006245	lig4	100	87.309	Haplochromis_burtoni
ENSSDUG00000010343	lig4	98	65.188	ENSHGLG00000000718	LIG4	99	65.188	Heterocephalus_glaber_female
ENSSDUG00000010343	lig4	98	65.188	ENSHGLG00100003265	LIG4	99	65.188	Heterocephalus_glaber_male
ENSSDUG00000010343	lig4	100	82.552	ENSHCOG00000012010	lig4	100	82.552	Hippocampus_comes
ENSSDUG00000010343	lig4	100	78.228	ENSIPUG00000013748	lig4	100	78.228	Ictalurus_punctatus
ENSSDUG00000010343	lig4	99	65.385	ENSSTOG00000024303	LIG4	99	65.385	Ictidomys_tridecemlineatus
ENSSDUG00000010343	lig4	98	65.743	ENSJJAG00000006750	Lig4	99	65.743	Jaculus_jaculus
ENSSDUG00000010343	lig4	100	84.573	ENSKMAG00000001149	lig4	100	84.464	Kryptolebias_marmoratus
ENSSDUG00000010343	lig4	91	87.952	ENSLBEG00000014578	lig4	100	87.952	Labrus_bergylta
ENSSDUG00000010343	lig4	100	68.634	ENSLACG00000003282	LIG4	100	68.634	Latimeria_chalumnae
ENSSDUG00000010343	lig4	100	73.304	ENSLOCG00000008901	lig4	99	73.304	Lepisosteus_oculatus
ENSSDUG00000010343	lig4	98	64.823	ENSLAFG00000031152	LIG4	99	64.823	Loxodonta_africana
ENSSDUG00000010343	lig4	98	66.630	ENSMFAG00000037235	LIG4	99	66.630	Macaca_fascicularis
ENSSDUG00000010343	lig4	98	66.519	ENSMMUG00000008874	LIG4	99	66.519	Macaca_mulatta
ENSSDUG00000010343	lig4	98	66.630	ENSMNEG00000023575	LIG4	99	66.630	Macaca_nemestrina
ENSSDUG00000010343	lig4	98	66.519	ENSMLEG00000026720	LIG4	99	66.519	Mandrillus_leucophaeus
ENSSDUG00000010343	lig4	100	90.372	ENSMAMG00000008472	lig4	99	90.372	Mastacembelus_armatus
ENSSDUG00000010343	lig4	99	87.842	ENSMZEG00005001855	lig4	100	87.527	Maylandia_zebra
ENSSDUG00000010343	lig4	100	65.976	ENSMGAG00000015532	LIG4	100	65.976	Meleagris_gallopavo
ENSSDUG00000010343	lig4	98	64.634	ENSMOCG00000019000	Lig4	99	64.634	Microtus_ochrogaster
ENSSDUG00000010343	lig4	100	87.856	ENSMMOG00000004390	lig4	100	87.856	Mola_mola
ENSSDUG00000010343	lig4	98	66.519	ENSMODG00000025064	LIG4	99	66.888	Monodelphis_domestica
ENSSDUG00000010343	lig4	100	88.293	ENSMALG00000008555	lig4	100	88.293	Monopterus_albus
ENSSDUG00000010343	lig4	98	65.299	MGP_CAROLIEiJ_G0030809	Lig4	99	65.299	Mus_caroli
ENSSDUG00000010343	lig4	98	65.410	ENSMUSG00000049717	Lig4	99	65.410	Mus_musculus
ENSSDUG00000010343	lig4	98	65.410	MGP_PahariEiJ_G0021270	Lig4	99	65.410	Mus_pahari
ENSSDUG00000010343	lig4	98	65.521	MGP_SPRETEiJ_G0031917	Lig4	99	65.521	Mus_spretus
ENSSDUG00000010343	lig4	98	65.078	ENSMPUG00000018675	LIG4	99	65.078	Mustela_putorius_furo
ENSSDUG00000010343	lig4	98	66.075	ENSMLUG00000001267	LIG4	99	66.075	Myotis_lucifugus
ENSSDUG00000010343	lig4	99	65.934	ENSNGAG00000013258	Lig4	99	65.934	Nannospalax_galili
ENSSDUG00000010343	lig4	99	87.623	ENSNBRG00000021252	lig4	100	87.309	Neolamprologus_brichardi
ENSSDUG00000010343	lig4	98	66.186	ENSNLEG00000007888	LIG4	99	66.186	Nomascus_leucogenys
ENSSDUG00000010343	lig4	98	65.078	ENSOPRG00000005765	LIG4	99	65.078	Ochotona_princeps
ENSSDUG00000010343	lig4	98	64.856	ENSODEG00000019683	LIG4	99	64.856	Octodon_degus
ENSSDUG00000010343	lig4	99	87.952	ENSONIG00000011969	lig4	99	87.856	Oreochromis_niloticus
ENSSDUG00000010343	lig4	98	65.965	ENSOCUG00000015734	LIG4	99	65.965	Oryctolagus_cuniculus
ENSSDUG00000010343	lig4	99	83.297	ENSORLG00000004041	lig4	99	83.515	Oryzias_latipes
ENSSDUG00000010343	lig4	99	83.406	ENSORLG00020019607	lig4	99	83.515	Oryzias_latipes_hni
ENSSDUG00000010343	lig4	99	83.406	ENSORLG00015017754	lig4	99	83.515	Oryzias_latipes_hsok
ENSSDUG00000010343	lig4	75	89.083	ENSOMEG00000003459	lig4	99	89.083	Oryzias_melastigma
ENSSDUG00000010343	lig4	98	66.297	ENSOGAG00000032120	LIG4	99	66.297	Otolemur_garnettii
ENSSDUG00000010343	lig4	80	69.158	ENSOARG00000005590	LIG4	97	69.158	Ovis_aries
ENSSDUG00000010343	lig4	98	66.962	ENSPPAG00000032998	LIG4	99	66.962	Pan_paniscus
ENSSDUG00000010343	lig4	98	65.410	ENSPPRG00000017804	LIG4	99	65.410	Panthera_pardus
ENSSDUG00000010343	lig4	98	65.299	ENSPTIG00000010051	LIG4	99	65.299	Panthera_tigris_altaica
ENSSDUG00000010343	lig4	98	67.073	ENSPTRG00000006025	LIG4	99	67.073	Pan_troglodytes
ENSSDUG00000010343	lig4	98	66.741	ENSPANG00000007562	LIG4	99	66.741	Papio_anubis
ENSSDUG00000010343	lig4	100	77.133	ENSPKIG00000011645	lig4	99	77.133	Paramormyrops_kingsleyae
ENSSDUG00000010343	lig4	100	67.432	ENSPSIG00000001504	LIG4	100	67.432	Pelodiscus_sinensis
ENSSDUG00000010343	lig4	98	79.955	ENSPMGG00000013486	lig4	100	79.108	Periophthalmus_magnuspinnatus
ENSSDUG00000010343	lig4	98	65.116	ENSPEMG00000000076	Lig4	99	65.006	Peromyscus_maniculatus_bairdii
ENSSDUG00000010343	lig4	98	65.559	ENSPCIG00000021882	LIG4	99	65.559	Phascolarctos_cinereus
ENSSDUG00000010343	lig4	100	87.978	ENSPFOG00000000797	lig4	100	88.197	Poecilia_formosa
ENSSDUG00000010343	lig4	100	87.869	ENSPLAG00000001196	lig4	100	88.087	Poecilia_latipinna
ENSSDUG00000010343	lig4	100	87.869	ENSPMEG00000021353	lig4	100	88.087	Poecilia_mexicana
ENSSDUG00000010343	lig4	100	87.104	ENSPREG00000007323	lig4	100	87.322	Poecilia_reticulata
ENSSDUG00000010343	lig4	98	66.630	ENSPPYG00000005540	LIG4	99	66.630	Pongo_abelii
ENSSDUG00000010343	lig4	98	65.410	ENSPVAG00000016403	LIG4	99	65.410	Pteropus_vampyrus
ENSSDUG00000010343	lig4	99	87.842	ENSPNYG00000009660	lig4	100	87.527	Pundamilia_nyererei
ENSSDUG00000010343	lig4	98	81.556	ENSPNAG00000028069	LIG4	99	81.556	Pygocentrus_nattereri
ENSSDUG00000010343	lig4	98	81.556	ENSPNAG00000028056	lig4	99	81.556	Pygocentrus_nattereri
ENSSDUG00000010343	lig4	98	65.410	ENSRNOG00000014605	Lig4	99	65.410	Rattus_norvegicus
ENSSDUG00000010343	lig4	98	65.743	ENSRBIG00000039962	LIG4	99	65.743	Rhinopithecus_bieti
ENSSDUG00000010343	lig4	98	66.630	ENSRROG00000006040	LIG4	99	66.630	Rhinopithecus_roxellana
ENSSDUG00000010343	lig4	98	66.186	ENSSBOG00000019029	LIG4	99	66.186	Saimiri_boliviensis_boliviensis
ENSSDUG00000010343	lig4	98	63.636	ENSSHAG00000009525	LIG4	99	64.009	Sarcophilus_harrisii
ENSSDUG00000010343	lig4	100	79.212	ENSSFOG00015012835	lig4	100	79.322	Scleropages_formosus
ENSSDUG00000010343	lig4	100	84.902	ENSSMAG00000011267	lig4	100	84.902	Scophthalmus_maximus
ENSSDUG00000010343	lig4	100	96.827	ENSSLDG00000003239	lig4	100	96.827	Seriola_lalandi_dorsalis
ENSSDUG00000010343	lig4	98	64.309	ENSSARG00000006573	LIG4	99	64.309	Sorex_araneus
ENSSDUG00000010343	lig4	92	68.839	ENSSPUG00000002444	LIG4	100	68.921	Sphenodon_punctatus
ENSSDUG00000010343	lig4	100	88.512	ENSSPAG00000001609	lig4	100	88.512	Stegastes_partitus
ENSSDUG00000010343	lig4	98	65.594	ENSSSCG00000009540	LIG4	99	65.594	Sus_scrofa
ENSSDUG00000010343	lig4	98	66.667	ENSTGUG00000010795	LIG4	99	66.667	Taeniopygia_guttata
ENSSDUG00000010343	lig4	100	86.214	ENSTRUG00000009984	lig4	100	86.214	Takifugu_rubripes
ENSSDUG00000010343	lig4	100	82.932	ENSTNIG00000010348	lig4	100	83.151	Tetraodon_nigroviridis
ENSSDUG00000010343	lig4	98	65.854	ENSTBEG00000017741	LIG4	99	65.854	Tupaia_belangeri
ENSSDUG00000010343	lig4	98	65.410	ENSTTRG00000012660	LIG4	99	65.410	Tursiops_truncatus
ENSSDUG00000010343	lig4	98	64.634	ENSUAMG00000003773	LIG4	99	64.634	Ursus_americanus
ENSSDUG00000010343	lig4	100	67.432	ENSXETG00000002654	lig4	100	67.432	Xenopus_tropicalis
ENSSDUG00000010343	lig4	100	87.760	ENSXCOG00000017401	lig4	100	87.978	Xiphophorus_couchianus
ENSSDUG00000010343	lig4	100	87.650	ENSXMAG00000015142	lig4	99	87.869	Xiphophorus_maculatus