EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000010521 (Gene tree)
Gene ID: 111223292
Gene Symbol: snrpd1
Alias: CHUNP6882|fk26a01|wu:fk26a01|zgc:86929
Full Name: small nuclear ribonucleoprotein D1 polypeptide
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 2683 bases
Position: chrBDQW01000110.1:6054620-6057302
Accession: ZDB-GENE-020419-14
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000014434	LSM	PF01423.22	4.5e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000014714	-	357	-	ENSSDUP00000014434	118 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000010521's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000010521's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000010521	snrpd1	81	30.526	ENSSDUG00000007090	oscp1a	58	32.394
ENSSDUG00000010521	snrpd1	85	30.769	ENSSDUG00000006870	snrpd3l	65	30.488

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000010521	snrpd1	92	95.370	ENSG00000167088	SNRPD1	91	95.370	Homo_sapiens
ENSSDUG00000010521	snrpd1	98	98.276	ENSAPOG00000019446	snrpd1	63	98.276	Acanthochromis_polyacanthus
ENSSDUG00000010521	snrpd1	92	95.370	ENSAMEG00000002576	SNRPD1	92	95.370	Ailuropoda_melanoleuca
ENSSDUG00000010521	snrpd1	95	100.000	ENSACIG00000011263	snrpd1	100	100.000	Amphilophus_citrinellus
ENSSDUG00000010521	snrpd1	98	98.276	ENSAOCG00000007406	snrpd1	97	98.276	Amphiprion_ocellaris
ENSSDUG00000010521	snrpd1	98	93.966	ENSAPEG00000014961	snrpd1	97	93.966	Amphiprion_percula
ENSSDUG00000010521	snrpd1	95	100.000	ENSAPEG00000012539	SNRPD1	100	100.000	Amphiprion_percula
ENSSDUG00000010521	snrpd1	98	98.276	ENSATEG00000014399	snrpd1	100	100.000	Anabas_testudineus
ENSSDUG00000010521	snrpd1	92	95.370	ENSAPLG00000012256	SNRPD1	91	95.370	Anas_platyrhynchos
ENSSDUG00000010521	snrpd1	92	95.370	ENSACAG00000006364	SNRPD1	91	95.370	Anolis_carolinensis
ENSSDUG00000010521	snrpd1	92	95.370	ENSANAG00000025641	SNRPD1	91	95.370	Aotus_nancymaae
ENSSDUG00000010521	snrpd1	95	100.000	ENSACLG00000017406	snrpd1	100	100.000	Astatotilapia_calliptera
ENSSDUG00000010521	snrpd1	98	97.414	ENSAMXG00000004589	snrpd1	97	97.414	Astyanax_mexicanus
ENSSDUG00000010521	snrpd1	92	92.593	ENSBTAG00000047266	-	92	91.743	Bos_taurus
ENSSDUG00000010521	snrpd1	92	95.370	ENSBTAG00000008292	SNRPD1	91	95.370	Bos_taurus
ENSSDUG00000010521	snrpd1	78	92.391	ENSBTAG00000012376	-	69	92.391	Bos_taurus
ENSSDUG00000010521	snrpd1	77	92.308	ENSBTAG00000055316	-	78	92.308	Bos_taurus
ENSSDUG00000010521	snrpd1	70	75.904	WBGene00004916	snr-3	73	71.739	Caenorhabditis_elegans
ENSSDUG00000010521	snrpd1	92	95.370	ENSCJAG00000042955	SNRPD1	91	95.370	Callithrix_jacchus
ENSSDUG00000010521	snrpd1	92	95.370	ENSCAFG00000018247	SNRPD1	91	95.370	Canis_familiaris
ENSSDUG00000010521	snrpd1	78	93.478	ENSCAFG00020015914	SNRPD1	71	94.505	Canis_lupus_dingo
ENSSDUG00000010521	snrpd1	92	95.370	ENSCHIG00000005557	SNRPD1	91	95.370	Capra_hircus
ENSSDUG00000010521	snrpd1	92	95.370	ENSTSYG00000030028	SNRPD1	91	95.370	Carlito_syrichta
ENSSDUG00000010521	snrpd1	97	96.522	ENSCAPG00000008103	SNRPD1	99	96.522	Cavia_aperea
ENSSDUG00000010521	snrpd1	97	96.522	ENSCPOG00000004679	SNRPD1	99	96.522	Cavia_porcellus
ENSSDUG00000010521	snrpd1	78	90.217	ENSCCAG00000005390	-	77	90.217	Cebus_capucinus
ENSSDUG00000010521	snrpd1	92	95.370	ENSCCAG00000032658	SNRPD1	91	95.370	Cebus_capucinus
ENSSDUG00000010521	snrpd1	92	92.593	ENSCCAG00000016652	-	91	92.593	Cebus_capucinus
ENSSDUG00000010521	snrpd1	92	94.444	ENSCCAG00000020611	-	91	94.444	Cebus_capucinus
ENSSDUG00000010521	snrpd1	92	95.370	ENSCATG00000039978	SNRPD1	91	95.370	Cercocebus_atys
ENSSDUG00000010521	snrpd1	92	95.370	ENSCLAG00000008691	SNRPD1	91	95.370	Chinchilla_lanigera
ENSSDUG00000010521	snrpd1	92	95.370	ENSCSAG00000017654	SNRPD1	91	95.370	Chlorocebus_sabaeus
ENSSDUG00000010521	snrpd1	92	95.370	ENSCPBG00000023143	SNRPD1	91	95.370	Chrysemys_picta_bellii
ENSSDUG00000010521	snrpd1	69	84.146	ENSCING00000024100	-	66	83.133	Ciona_intestinalis
ENSSDUG00000010521	snrpd1	70	83.133	ENSCSAVG00000004578	-	67	82.143	Ciona_savignyi
ENSSDUG00000010521	snrpd1	92	95.370	ENSCGRG00001021055	-	91	95.370	Cricetulus_griseus_chok1gshd
ENSSDUG00000010521	snrpd1	78	70.652	ENSCGRG00001009945	-	81	70.652	Cricetulus_griseus_chok1gshd
ENSSDUG00000010521	snrpd1	78	70.652	ENSCGRG00000006224	-	81	70.652	Cricetulus_griseus_crigri
ENSSDUG00000010521	snrpd1	92	95.370	ENSCGRG00000000490	-	91	95.370	Cricetulus_griseus_crigri
ENSSDUG00000010521	snrpd1	98	96.552	ENSCSEG00000018141	snrpd1	97	96.552	Cynoglossus_semilaevis
ENSSDUG00000010521	snrpd1	98	98.276	ENSCVAG00000000534	snrpd1	97	98.276	Cyprinodon_variegatus
ENSSDUG00000010521	snrpd1	98	97.414	ENSDARG00000011648	snrpd1	97	97.414	Danio_rerio
ENSSDUG00000010521	snrpd1	92	95.370	ENSDNOG00000040310	SNRPD1	91	95.370	Dasypus_novemcinctus
ENSSDUG00000010521	snrpd1	92	95.370	ENSDORG00000008349	Snrpd1	91	95.370	Dipodomys_ordii
ENSSDUG00000010521	snrpd1	76	78.889	FBgn0261933	SmD1	73	78.889	Drosophila_melanogaster
ENSSDUG00000010521	snrpd1	69	95.062	ENSETEG00000011689	SNRPD1	68	95.062	Echinops_telfairi
ENSSDUG00000010521	snrpd1	92	90.826	ENSEBUG00000003170	snrpd1	91	91.667	Eptatretus_burgeri
ENSSDUG00000010521	snrpd1	95	96.429	ENSEASG00005002433	SNRPD1	100	96.429	Equus_asinus_asinus
ENSSDUG00000010521	snrpd1	95	96.429	ENSECAG00000014373	SNRPD1	100	96.429	Equus_caballus
ENSSDUG00000010521	snrpd1	75	95.506	ENSEEUG00000004987	SNRPD1	100	95.506	Erinaceus_europaeus
ENSSDUG00000010521	snrpd1	92	85.185	ENSELUG00000000088	snrpd1	76	96.667	Esox_lucius
ENSSDUG00000010521	snrpd1	92	95.370	ENSFCAG00000012352	SNRPD1	91	95.370	Felis_catus
ENSSDUG00000010521	snrpd1	95	96.429	ENSFALG00000002646	SNRPD1	100	96.429	Ficedula_albicollis
ENSSDUG00000010521	snrpd1	98	97.414	ENSGMOG00000015607	snrpd1	97	97.414	Gadus_morhua
ENSSDUG00000010521	snrpd1	92	95.370	ENSGALG00000041334	SNRPD1	91	95.370	Gallus_gallus
ENSSDUG00000010521	snrpd1	98	98.276	ENSGAFG00000011171	snrpd1	97	98.276	Gambusia_affinis
ENSSDUG00000010521	snrpd1	98	97.414	ENSGACG00000005201	SNRPD1	97	97.414	Gasterosteus_aculeatus
ENSSDUG00000010521	snrpd1	92	95.370	ENSGAGG00000011197	SNRPD1	91	95.370	Gopherus_agassizii
ENSSDUG00000010521	snrpd1	78	89.130	ENSGGOG00000026706	-	77	89.130	Gorilla_gorilla
ENSSDUG00000010521	snrpd1	92	95.370	ENSGGOG00000041053	SNRPD1	91	95.370	Gorilla_gorilla
ENSSDUG00000010521	snrpd1	98	98.276	ENSHBUG00000003236	snrpd1	97	98.276	Haplochromis_burtoni
ENSSDUG00000010521	snrpd1	92	95.370	ENSHGLG00000007152	SNRPD1	91	95.370	Heterocephalus_glaber_female
ENSSDUG00000010521	snrpd1	92	95.370	ENSHGLG00100008618	SNRPD1	91	95.370	Heterocephalus_glaber_male
ENSSDUG00000010521	snrpd1	98	98.276	ENSIPUG00000003576	snrpd1	97	98.276	Ictalurus_punctatus
ENSSDUG00000010521	snrpd1	94	93.694	ENSSTOG00000000485	SNRPD1	94	93.694	Ictidomys_tridecemlineatus
ENSSDUG00000010521	snrpd1	92	95.370	ENSJJAG00000017698	Snrpd1	91	95.370	Jaculus_jaculus
ENSSDUG00000010521	snrpd1	98	98.276	ENSKMAG00000005987	snrpd1	97	98.276	Kryptolebias_marmoratus
ENSSDUG00000010521	snrpd1	98	98.276	ENSLBEG00000003327	snrpd1	97	98.276	Labrus_bergylta
ENSSDUG00000010521	snrpd1	92	95.370	ENSLACG00000001955	SNRPD1	91	95.370	Latimeria_chalumnae
ENSSDUG00000010521	snrpd1	92	94.495	ENSLOCG00000002003	snrpd1	93	94.495	Lepisosteus_oculatus
ENSSDUG00000010521	snrpd1	92	95.370	ENSLAFG00000005819	SNRPD1	92	95.370	Loxodonta_africana
ENSSDUG00000010521	snrpd1	92	95.370	ENSMFAG00000042080	SNRPD1	91	95.370	Macaca_fascicularis
ENSSDUG00000010521	snrpd1	97	96.491	ENSMMUG00000003992	SNRPD1	97	96.491	Macaca_mulatta
ENSSDUG00000010521	snrpd1	92	95.370	ENSMNEG00000041296	SNRPD1	91	95.370	Macaca_nemestrina
ENSSDUG00000010521	snrpd1	92	95.370	ENSMLEG00000028659	SNRPD1	91	95.370	Mandrillus_leucophaeus
ENSSDUG00000010521	snrpd1	98	98.276	ENSMAMG00000012971	snrpd1	97	98.276	Mastacembelus_armatus
ENSSDUG00000010521	snrpd1	98	98.276	ENSMZEG00005004685	snrpd1	97	98.276	Maylandia_zebra
ENSSDUG00000010521	snrpd1	92	95.370	ENSMGAG00000011598	SNRPD1	89	95.370	Meleagris_gallopavo
ENSSDUG00000010521	snrpd1	78	78.261	ENSMAUG00000016502	-	83	78.261	Mesocricetus_auratus
ENSSDUG00000010521	snrpd1	82	89.691	ENSMAUG00000006829	-	59	94.444	Mesocricetus_auratus
ENSSDUG00000010521	snrpd1	78	78.261	ENSMAUG00000016467	-	83	78.261	Mesocricetus_auratus
ENSSDUG00000010521	snrpd1	92	95.370	ENSMICG00000044066	SNRPD1	91	95.370	Microcebus_murinus
ENSSDUG00000010521	snrpd1	97	96.491	ENSMOCG00000017367	Snrpd1	94	96.491	Microtus_ochrogaster
ENSSDUG00000010521	snrpd1	98	98.276	ENSMMOG00000019089	snrpd1	97	98.276	Mola_mola
ENSSDUG00000010521	snrpd1	97	96.491	ENSMODG00000021487	SNRPD1	98	96.491	Monodelphis_domestica
ENSSDUG00000010521	snrpd1	98	98.276	ENSMALG00000014459	snrpd1	97	98.276	Monopterus_albus
ENSSDUG00000010521	snrpd1	92	95.370	MGP_CAROLIEiJ_G0021994	Snrpd1	91	95.370	Mus_caroli
ENSSDUG00000010521	snrpd1	92	95.370	ENSMUSG00000002477	Snrpd1	91	95.370	Mus_musculus
ENSSDUG00000010521	snrpd1	92	95.370	MGP_PahariEiJ_G0018731	Snrpd1	91	95.370	Mus_pahari
ENSSDUG00000010521	snrpd1	92	95.370	MGP_SPRETEiJ_G0022910	Snrpd1	91	95.370	Mus_spretus
ENSSDUG00000010521	snrpd1	92	95.370	ENSMPUG00000005567	-	92	95.370	Mustela_putorius_furo
ENSSDUG00000010521	snrpd1	92	94.444	ENSMPUG00000020041	-	91	94.444	Mustela_putorius_furo
ENSSDUG00000010521	snrpd1	78	94.565	ENSMLUG00000009124	SNRPD1	71	94.565	Myotis_lucifugus
ENSSDUG00000010521	snrpd1	100	94.915	ENSNGAG00000023946	Snrpd1	97	94.915	Nannospalax_galili
ENSSDUG00000010521	snrpd1	77	97.802	ENSNBRG00000012119	snrpd1	75	97.802	Neolamprologus_brichardi
ENSSDUG00000010521	snrpd1	92	91.743	ENSNLEG00000031430	SNRPD1	91	92.593	Nomascus_leucogenys
ENSSDUG00000010521	snrpd1	92	95.370	ENSODEG00000005764	SNRPD1	91	95.370	Octodon_degus
ENSSDUG00000010521	snrpd1	98	98.276	ENSONIG00000002486	snrpd1	97	98.276	Oreochromis_niloticus
ENSSDUG00000010521	snrpd1	83	85.714	ENSOANG00000004638	-	82	85.714	Ornithorhynchus_anatinus
ENSSDUG00000010521	snrpd1	92	95.370	ENSOCUG00000023761	-	92	95.370	Oryctolagus_cuniculus
ENSSDUG00000010521	snrpd1	92	94.444	ENSOCUG00000014399	-	91	94.444	Oryctolagus_cuniculus
ENSSDUG00000010521	snrpd1	95	100.000	ENSORLG00000012516	snrpd1	100	100.000	Oryzias_latipes
ENSSDUG00000010521	snrpd1	98	98.276	ENSORLG00020005743	snrpd1	97	98.276	Oryzias_latipes_hni
ENSSDUG00000010521	snrpd1	98	98.276	ENSORLG00015013402	snrpd1	97	98.276	Oryzias_latipes_hsok
ENSSDUG00000010521	snrpd1	98	98.276	ENSOMEG00000011571	snrpd1	97	98.276	Oryzias_melastigma
ENSSDUG00000010521	snrpd1	92	94.495	ENSOGAG00000007833	SNRPD1	92	94.495	Otolemur_garnettii
ENSSDUG00000010521	snrpd1	79	93.548	ENSOARG00000003413	-	69	94.565	Ovis_aries
ENSSDUG00000010521	snrpd1	92	95.370	ENSPPAG00000042593	SNRPD1	91	95.370	Pan_paniscus
ENSSDUG00000010521	snrpd1	92	95.370	ENSPPRG00000002399	SNRPD1	91	95.370	Panthera_pardus
ENSSDUG00000010521	snrpd1	92	67.890	ENSPPRG00000005009	-	88	68.519	Panthera_pardus
ENSSDUG00000010521	snrpd1	97	96.491	ENSPTIG00000013206	SNRPD1	100	96.491	Panthera_tigris_altaica
ENSSDUG00000010521	snrpd1	92	95.370	ENSPTRG00000009909	SNRPD1	91	95.370	Pan_troglodytes
ENSSDUG00000010521	snrpd1	84	87.879	ENSPTRG00000050159	-	84	88.776	Pan_troglodytes
ENSSDUG00000010521	snrpd1	92	95.370	ENSPANG00000023478	SNRPD1	91	95.370	Papio_anubis
ENSSDUG00000010521	snrpd1	95	99.107	ENSPKIG00000021610	snrpd1	100	99.107	Paramormyrops_kingsleyae
ENSSDUG00000010521	snrpd1	98	96.552	ENSPKIG00000003985	SNRPD1	97	96.552	Paramormyrops_kingsleyae
ENSSDUG00000010521	snrpd1	98	98.276	ENSPMGG00000001862	snrpd1	97	98.276	Periophthalmus_magnuspinnatus
ENSSDUG00000010521	snrpd1	92	95.370	ENSPEMG00000014773	-	91	95.370	Peromyscus_maniculatus_bairdii
ENSSDUG00000010521	snrpd1	83	82.000	ENSPMAG00000003938	-	83	81.188	Petromyzon_marinus
ENSSDUG00000010521	snrpd1	95	96.429	ENSPCIG00000020320	SNRPD1	100	96.429	Phascolarctos_cinereus
ENSSDUG00000010521	snrpd1	98	93.103	ENSPFOG00000012448	SNRPD1	97	93.103	Poecilia_formosa
ENSSDUG00000010521	snrpd1	98	93.103	ENSPLAG00000006738	snrpd1	97	93.103	Poecilia_latipinna
ENSSDUG00000010521	snrpd1	98	93.103	ENSPMEG00000021942	snrpd1	97	93.103	Poecilia_mexicana
ENSSDUG00000010521	snrpd1	98	98.276	ENSPREG00000007094	snrpd1	97	98.276	Poecilia_reticulata
ENSSDUG00000010521	snrpd1	92	95.370	ENSPPYG00000025874	SNRPD1	91	95.370	Pongo_abelii
ENSSDUG00000010521	snrpd1	92	95.370	ENSPCOG00000013327	SNRPD1	91	95.370	Propithecus_coquereli
ENSSDUG00000010521	snrpd1	92	94.495	ENSPVAG00000005511	SNRPD1	72	95.370	Pteropus_vampyrus
ENSSDUG00000010521	snrpd1	98	96.552	ENSPNAG00000017824	snrpd1	97	96.552	Pygocentrus_nattereri
ENSSDUG00000010521	snrpd1	92	95.370	ENSRNOG00000013714	Snrpd1	91	95.370	Rattus_norvegicus
ENSSDUG00000010521	snrpd1	92	95.370	ENSRBIG00000022996	SNRPD1	91	95.370	Rhinopithecus_bieti
ENSSDUG00000010521	snrpd1	92	95.370	ENSRROG00000027640	SNRPD1	91	95.370	Rhinopithecus_roxellana
ENSSDUG00000010521	snrpd1	92	95.370	ENSSBOG00000020998	SNRPD1	91	95.370	Saimiri_boliviensis_boliviensis
ENSSDUG00000010521	snrpd1	92	95.370	ENSSHAG00000011791	SNRPD1	91	95.370	Sarcophilus_harrisii
ENSSDUG00000010521	snrpd1	98	97.414	ENSSFOG00015022253	-	97	97.414	Scleropages_formosus
ENSSDUG00000010521	snrpd1	98	97.414	ENSSFOG00015008809	-	97	97.414	Scleropages_formosus
ENSSDUG00000010521	snrpd1	98	97.414	ENSSMAG00000008765	snrpd1	100	99.107	Scophthalmus_maximus
ENSSDUG00000010521	snrpd1	98	98.276	ENSSLDG00000011858	snrpd1	97	98.276	Seriola_lalandi_dorsalis
ENSSDUG00000010521	snrpd1	57	97.015	ENSSARG00000004271	SNRPD1	100	97.015	Sorex_araneus
ENSSDUG00000010521	snrpd1	92	95.370	ENSSPUG00000002824	SNRPD1	91	95.370	Sphenodon_punctatus
ENSSDUG00000010521	snrpd1	95	100.000	ENSSPAG00000015229	snrpd1	100	100.000	Stegastes_partitus
ENSSDUG00000010521	snrpd1	95	96.429	ENSSSCG00000003701	SNRPD1	100	96.429	Sus_scrofa
ENSSDUG00000010521	snrpd1	92	95.370	ENSTGUG00000005095	SNRPD1	91	95.370	Taeniopygia_guttata
ENSSDUG00000010521	snrpd1	95	98.214	ENSTRUG00000008977	snrpd1	100	98.214	Takifugu_rubripes
ENSSDUG00000010521	snrpd1	87	96.117	ENSTNIG00000001224	snrpd1	99	96.117	Tetraodon_nigroviridis
ENSSDUG00000010521	snrpd1	69	95.062	ENSTBEG00000013776	SNRPD1	92	95.062	Tupaia_belangeri
ENSSDUG00000010521	snrpd1	92	95.370	ENSTTRG00000002654	SNRPD1	94	95.370	Tursiops_truncatus
ENSSDUG00000010521	snrpd1	97	96.491	ENSUAMG00000013431	SNRPD1	97	96.491	Ursus_americanus
ENSSDUG00000010521	snrpd1	92	95.370	ENSUMAG00000019740	SNRPD1	91	95.370	Ursus_maritimus
ENSSDUG00000010521	snrpd1	92	94.495	ENSVPAG00000010056	SNRPD1	72	95.370	Vicugna_pacos
ENSSDUG00000010521	snrpd1	95	96.429	ENSVVUG00000004009	SNRPD1	100	96.429	Vulpes_vulpes
ENSSDUG00000010521	snrpd1	92	93.519	ENSXETG00000027354	snrpd1	91	93.519	Xenopus_tropicalis
ENSSDUG00000010521	snrpd1	98	98.276	ENSXCOG00000020108	snrpd1	97	98.276	Xiphophorus_couchianus
ENSSDUG00000010521	snrpd1	98	98.276	ENSXMAG00000003368	snrpd1	97	98.276	Xiphophorus_maculatus