EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000010651 (Gene tree)
Gene ID: 111222778
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 11855 bases
Position: chrBDQW01000105.1:1687185-1699039
Accession: 111222778
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000014587	RRM_1	PF00076.22	4.8e-32	1	2
ENSSDUP00000014587	RRM_1	PF00076.22	4.8e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000014870	-	1911	XM_022746622	ENSSDUP00000014587	540 (aa)	XP_022602343	UPI000BBE1437

Gene Model

Click here to download ENSSDUG00000010651's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000010651's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000010651	pspc1	66	62.011	ENSSDUG00000021886	nono	80	61.732
ENSSDUG00000010651	pspc1	74	59.804	ENSSDUG00000008402	sfpq	60	59.158

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000010651	pspc1	76	74.186	ENSG00000121390	PSPC1	82	81.173	Homo_sapiens
ENSSDUG00000010651	pspc1	100	87.037	ENSAPOG00000015946	pspc1	100	85.370	Acanthochromis_polyacanthus
ENSSDUG00000010651	pspc1	76	74.186	ENSAMEG00000017420	PSPC1	88	68.966	Ailuropoda_melanoleuca
ENSSDUG00000010651	pspc1	100	77.407	ENSACIG00000018695	pspc1	100	74.815	Amphilophus_citrinellus
ENSSDUG00000010651	pspc1	100	86.852	ENSAOCG00000005279	pspc1	100	85.741	Amphiprion_ocellaris
ENSSDUG00000010651	pspc1	100	86.296	ENSAPEG00000015927	pspc1	100	85.185	Amphiprion_percula
ENSSDUG00000010651	pspc1	100	76.838	ENSATEG00000004878	pspc1	100	73.713	Anabas_testudineus
ENSSDUG00000010651	pspc1	64	74.176	ENSAPLG00000006246	PSPC1	100	67.285	Anas_platyrhynchos
ENSSDUG00000010651	pspc1	68	64.815	ENSAPLG00000003643	SFPQ	76	59.259	Anas_platyrhynchos
ENSSDUG00000010651	pspc1	99	60.847	ENSACAG00000002093	PSPC1	88	67.404	Anolis_carolinensis
ENSSDUG00000010651	pspc1	64	59.664	ENSACAG00000013307	-	61	56.219	Anolis_carolinensis
ENSSDUG00000010651	pspc1	80	71.903	ENSANAG00000000059	PSPC1	83	78.704	Aotus_nancymaae
ENSSDUG00000010651	pspc1	100	75.231	ENSACLG00000027220	pspc1	100	73.162	Astatotilapia_calliptera
ENSSDUG00000010651	pspc1	100	66.489	ENSAMXG00000036881	pspc1	100	65.653	Astyanax_mexicanus
ENSSDUG00000010651	pspc1	76	74.186	ENSBTAG00000003934	PSPC1	89	68.763	Bos_taurus
ENSSDUG00000010651	pspc1	80	71.903	ENSCJAG00000004554	PSPC1	88	69.168	Callithrix_jacchus
ENSSDUG00000010651	pspc1	76	74.186	ENSCAFG00020002009	PSPC1	83	81.173	Canis_lupus_dingo
ENSSDUG00000010651	pspc1	76	74.186	ENSCHIG00000016708	PSPC1	89	68.763	Capra_hircus
ENSSDUG00000010651	pspc1	67	65.891	ENSTSYG00000032882	PSPC1	88	61.201	Carlito_syrichta
ENSSDUG00000010651	pspc1	88	67.343	ENSCPOG00000000395	PSPC1	83	81.173	Cavia_porcellus
ENSSDUG00000010651	pspc1	80	71.903	ENSCCAG00000033498	PSPC1	88	69.371	Cebus_capucinus
ENSSDUG00000010651	pspc1	76	73.953	ENSCATG00000036434	PSPC1	90	81.173	Cercocebus_atys
ENSSDUG00000010651	pspc1	76	67.285	ENSCLAG00000005241	PSPC1	89	68.213	Chinchilla_lanigera
ENSSDUG00000010651	pspc1	80	67.411	ENSCHOG00000008913	PSPC1	88	65.385	Choloepus_hoffmanni
ENSSDUG00000010651	pspc1	75	74.645	ENSCPBG00000020859	PSPC1	88	68.016	Chrysemys_picta_bellii
ENSSDUG00000010651	pspc1	54	57.388	ENSCSAVG00000003533	-	53	58.633	Ciona_savignyi
ENSSDUG00000010651	pspc1	77	56.813	ENSCANG00000018948	PSPC1	87	83.206	Colobus_angolensis_palliatus
ENSSDUG00000010651	pspc1	85	69.038	ENSCGRG00001018368	Pspc1	88	68.966	Cricetulus_griseus_chok1gshd
ENSSDUG00000010651	pspc1	85	69.038	ENSCGRG00000011724	Pspc1	88	68.966	Cricetulus_griseus_crigri
ENSSDUG00000010651	pspc1	100	75.601	ENSCVAG00000007679	-	100	74.122	Cyprinodon_variegatus
ENSSDUG00000010651	pspc1	100	62.950	ENSDARG00000006621	pspc1	100	67.612	Danio_rerio
ENSSDUG00000010651	pspc1	76	74.537	ENSDNOG00000011078	PSPC1	89	68.889	Dasypus_novemcinctus
ENSSDUG00000010651	pspc1	93	62.286	ENSDORG00000016050	Pspc1	88	66.126	Dipodomys_ordii
ENSSDUG00000010651	pspc1	54	44.860	ENSEBUG00000010133	pspc1	74	47.518	Eptatretus_burgeri
ENSSDUG00000010651	pspc1	74	62.779	ENSEBUG00000003964	-	62	67.246	Eptatretus_burgeri
ENSSDUG00000010651	pspc1	76	74.419	ENSEASG00005000119	PSPC1	84	80.428	Equus_asinus_asinus
ENSSDUG00000010651	pspc1	76	74.419	ENSECAG00000017286	PSPC1	84	80.428	Equus_caballus
ENSSDUG00000010651	pspc1	52	64.214	ENSEEUG00000011288	-	51	70.769	Erinaceus_europaeus
ENSSDUG00000010651	pspc1	100	66.075	ENSELUG00000003746	pspc1	100	68.028	Esox_lucius
ENSSDUG00000010651	pspc1	76	74.419	ENSFCAG00000027841	PSPC1	83	81.173	Felis_catus
ENSSDUG00000010651	pspc1	87	66.803	ENSFALG00000008750	PSPC1	88	67.814	Ficedula_albicollis
ENSSDUG00000010651	pspc1	100	62.032	ENSFDAG00000002617	PSPC1	90	68.966	Fukomys_damarensis
ENSSDUG00000010651	pspc1	100	63.063	ENSGMOG00000015074	pspc1	100	63.139	Gadus_morhua
ENSSDUG00000010651	pspc1	75	74.408	ENSGALG00000017142	PSPC1	88	67.814	Gallus_gallus
ENSSDUG00000010651	pspc1	72	79.695	ENSGAFG00000006327	pspc1	81	77.665	Gambusia_affinis
ENSSDUG00000010651	pspc1	100	74.815	ENSGACG00000014901	pspc1	92	85.976	Gasterosteus_aculeatus
ENSSDUG00000010651	pspc1	69	63.926	ENSGAGG00000017325	-	61	58.809	Gopherus_agassizii
ENSSDUG00000010651	pspc1	75	74.645	ENSGAGG00000019164	PSPC1	88	68.016	Gopherus_agassizii
ENSSDUG00000010651	pspc1	88	67.951	ENSGGOG00000003414	PSPC1	82	81.173	Gorilla_gorilla
ENSSDUG00000010651	pspc1	100	83.889	ENSHBUG00000001139	pspc1	100	82.963	Haplochromis_burtoni
ENSSDUG00000010651	pspc1	92	66.214	ENSHGLG00000018811	PSPC1	89	68.966	Heterocephalus_glaber_female
ENSSDUG00000010651	pspc1	57	76.825	ENSHGLG00100007962	PSPC1	87	81.818	Heterocephalus_glaber_male
ENSSDUG00000010651	pspc1	82	76.275	ENSHCOG00000013251	pspc1	99	74.058	Hippocampus_comes
ENSSDUG00000010651	pspc1	100	67.450	ENSIPUG00000013192	pspc1	100	66.908	Ictalurus_punctatus
ENSSDUG00000010651	pspc1	88	67.671	ENSSTOG00000026833	PSPC1	82	81.173	Ictidomys_tridecemlineatus
ENSSDUG00000010651	pspc1	76	73.953	ENSJJAG00000018334	Pspc1	88	68.763	Jaculus_jaculus
ENSSDUG00000010651	pspc1	100	61.624	ENSKMAG00000013525	-	98	72.113	Kryptolebias_marmoratus
ENSSDUG00000010651	pspc1	99	82.649	ENSLBEG00000004474	pspc1	100	82.463	Labrus_bergylta
ENSSDUG00000010651	pspc1	88	66.600	ENSLACG00000010762	PSPC1	88	67.206	Latimeria_chalumnae
ENSSDUG00000010651	pspc1	89	71.429	ENSLOCG00000010832	pspc1	99	66.607	Lepisosteus_oculatus
ENSSDUG00000010651	pspc1	76	74.419	ENSLAFG00000010968	PSPC1	88	69.168	Loxodonta_africana
ENSSDUG00000010651	pspc1	76	73.953	ENSMFAG00000032728	PSPC1	91	81.231	Macaca_fascicularis
ENSSDUG00000010651	pspc1	76	73.953	ENSMMUG00000020262	PSPC1	88	81.173	Macaca_mulatta
ENSSDUG00000010651	pspc1	76	73.953	ENSMNEG00000027401	PSPC1	85	76.179	Macaca_nemestrina
ENSSDUG00000010651	pspc1	64	74.185	ENSMLEG00000039043	PSPC1	94	68.445	Mandrillus_leucophaeus
ENSSDUG00000010651	pspc1	100	85.185	ENSMAMG00000004333	pspc1	100	82.963	Mastacembelus_armatus
ENSSDUG00000010651	pspc1	100	75.231	ENSMZEG00005005726	pspc1	100	73.162	Maylandia_zebra
ENSSDUG00000010651	pspc1	65	74.044	ENSMGAG00000015134	PSPC1	100	67.206	Meleagris_gallopavo
ENSSDUG00000010651	pspc1	81	65.188	ENSMAUG00000021067	Pspc1	86	67.980	Mesocricetus_auratus
ENSSDUG00000010651	pspc1	88	68.966	ENSMICG00000013970	PSPC1	83	81.173	Microcebus_murinus
ENSSDUG00000010651	pspc1	80	71.333	ENSMOCG00000006060	Pspc1	88	68.560	Microtus_ochrogaster
ENSSDUG00000010651	pspc1	100	48.050	ENSMMOG00000004352	pspc1	71	89.286	Mola_mola
ENSSDUG00000010651	pspc1	74	76.399	ENSMODG00000008029	PSPC1	66	76.642	Monodelphis_domestica
ENSSDUG00000010651	pspc1	100	81.852	ENSMALG00000008914	pspc1	100	80.556	Monopterus_albus
ENSSDUG00000010651	pspc1	74	75.550	MGP_CAROLIEiJ_G0019341	Pspc1	86	75.743	Mus_caroli
ENSSDUG00000010651	pspc1	76	73.832	ENSMUSG00000021938	Pspc1	86	75.743	Mus_musculus
ENSSDUG00000010651	pspc1	76	73.832	MGP_PahariEiJ_G0030359	Pspc1	86	75.743	Mus_pahari
ENSSDUG00000010651	pspc1	76	73.832	MGP_SPRETEiJ_G0020232	Pspc1	86	75.743	Mus_spretus
ENSSDUG00000010651	pspc1	76	74.186	ENSMPUG00000013347	PSPC1	88	68.966	Mustela_putorius_furo
ENSSDUG00000010651	pspc1	76	73.903	ENSMLUG00000017663	PSPC1	89	68.548	Myotis_lucifugus
ENSSDUG00000010651	pspc1	76	74.239	ENSNGAG00000011271	Pspc1	88	68.560	Nannospalax_galili
ENSSDUG00000010651	pspc1	72	82.097	ENSNBRG00000014059	pspc1	92	77.525	Neolamprologus_brichardi
ENSSDUG00000010651	pspc1	76	74.186	ENSNLEG00000001294	PSPC1	88	69.168	Nomascus_leucogenys
ENSSDUG00000010651	pspc1	61	76.804	ENSMEUG00000000476	PSPC1	72	76.804	Notamacropus_eugenii
ENSSDUG00000010651	pspc1	76	66.589	ENSODEG00000019012	-	88	63.489	Octodon_degus
ENSSDUG00000010651	pspc1	76	63.279	ENSODEG00000007817	-	88	57.570	Octodon_degus
ENSSDUG00000010651	pspc1	100	85.370	ENSONIG00000012010	pspc1	99	84.259	Oreochromis_niloticus
ENSSDUG00000010651	pspc1	76	66.820	ENSOANG00000009017	-	100	67.749	Ornithorhynchus_anatinus
ENSSDUG00000010651	pspc1	74	59.223	ENSOANG00000011381	-	81	59.804	Ornithorhynchus_anatinus
ENSSDUG00000010651	pspc1	88	67.821	ENSOCUG00000006153	PSPC1	88	68.966	Oryctolagus_cuniculus
ENSSDUG00000010651	pspc1	100	75.970	ENSORLG00000004232	-	100	74.259	Oryzias_latipes
ENSSDUG00000010651	pspc1	100	76.155	ENSORLG00020000578	PSPC1	100	72.643	Oryzias_latipes_hni
ENSSDUG00000010651	pspc1	100	76.155	ENSORLG00015017480	pspc1	100	74.444	Oryzias_latipes_hsok
ENSSDUG00000010651	pspc1	76	74.419	ENSOGAG00000012643	PSPC1	88	69.168	Otolemur_garnettii
ENSSDUG00000010651	pspc1	75	74.065	ENSOARG00000014163	PSPC1	95	68.432	Ovis_aries
ENSSDUG00000010651	pspc1	76	67.907	ENSPPAG00000009836	PSPC1	92	81.173	Pan_paniscus
ENSSDUG00000010651	pspc1	76	74.419	ENSPPRG00000008833	PSPC1	88	69.168	Panthera_pardus
ENSSDUG00000010651	pspc1	64	74.457	ENSPTIG00000016917	PSPC1	84	68.445	Panthera_tigris_altaica
ENSSDUG00000010651	pspc1	76	74.074	ENSPTRG00000005677	PSPC1	82	81.173	Pan_troglodytes
ENSSDUG00000010651	pspc1	76	73.953	ENSPANG00000001992	PSPC1	89	81.231	Papio_anubis
ENSSDUG00000010651	pspc1	100	67.636	ENSPKIG00000003578	pspc1	89	73.975	Paramormyrops_kingsleyae
ENSSDUG00000010651	pspc1	75	73.697	ENSPSIG00000005168	PSPC1	88	67.206	Pelodiscus_sinensis
ENSSDUG00000010651	pspc1	66	74.238	ENSPMGG00000015135	pspc1	98	71.549	Periophthalmus_magnuspinnatus
ENSSDUG00000010651	pspc1	76	74.005	ENSPEMG00000015214	Pspc1	88	68.763	Peromyscus_maniculatus_bairdii
ENSSDUG00000010651	pspc1	53	41.497	ENSPMAG00000004618	pspc1	81	43.820	Petromyzon_marinus
ENSSDUG00000010651	pspc1	88	67.951	ENSPCIG00000017680	PSPC1	88	69.371	Phascolarctos_cinereus
ENSSDUG00000010651	pspc1	99	76.895	ENSPFOG00000003362	pspc1	100	76.340	Poecilia_formosa
ENSSDUG00000010651	pspc1	100	76.923	ENSPLAG00000011540	pspc1	100	76.374	Poecilia_latipinna
ENSSDUG00000010651	pspc1	77	52.817	ENSPLAG00000004407	-	54	54.034	Poecilia_latipinna
ENSSDUG00000010651	pspc1	77	53.647	ENSPMEG00000001025	-	53	54.523	Poecilia_mexicana
ENSSDUG00000010651	pspc1	100	76.740	ENSPMEG00000008322	pspc1	100	76.190	Poecilia_mexicana
ENSSDUG00000010651	pspc1	100	76.374	ENSPREG00000007786	pspc1	100	75.824	Poecilia_reticulata
ENSSDUG00000010651	pspc1	88	67.546	ENSPPYG00000005186	PSPC1	85	76.427	Pongo_abelii
ENSSDUG00000010651	pspc1	88	65.971	ENSPCOG00000014364	PSPC1	88	66.388	Propithecus_coquereli
ENSSDUG00000010651	pspc1	76	73.611	ENSPVAG00000005036	PSPC1	89	67.879	Pteropus_vampyrus
ENSSDUG00000010651	pspc1	100	75.601	ENSPNYG00000008893	pspc1	100	73.346	Pundamilia_nyererei
ENSSDUG00000010651	pspc1	100	68.058	ENSPNAG00000016511	pspc1	100	68.421	Pygocentrus_nattereri
ENSSDUG00000010651	pspc1	76	74.005	ENSRNOG00000020782	Pspc1	86	75.931	Rattus_norvegicus
ENSSDUG00000010651	pspc1	81	71.460	ENSRBIG00000036057	PSPC1	91	81.173	Rhinopithecus_bieti
ENSSDUG00000010651	pspc1	81	71.460	ENSRROG00000036334	PSPC1	82	81.173	Rhinopithecus_roxellana
ENSSDUG00000010651	pspc1	67	64.136	ENSSBOG00000028172	PSPC1	90	79.348	Saimiri_boliviensis_boliviensis
ENSSDUG00000010651	pspc1	88	63.232	ENSSHAG00000004696	PSPC1	88	64.646	Sarcophilus_harrisii
ENSSDUG00000010651	pspc1	88	72.934	ENSSFOG00015001395	pspc1	99	74.486	Scleropages_formosus
ENSSDUG00000010651	pspc1	100	84.182	ENSSMAG00000001761	pspc1	100	84.182	Scophthalmus_maximus
ENSSDUG00000010651	pspc1	100	83.519	ENSSLDG00000004284	pspc1	100	79.633	Seriola_lalandi_dorsalis
ENSSDUG00000010651	pspc1	76	68.372	ENSSARG00000000888	PSPC1	89	63.286	Sorex_araneus
ENSSDUG00000010651	pspc1	90	54.691	ENSSPUG00000008550	PSPC1	88	58.025	Sphenodon_punctatus
ENSSDUG00000010651	pspc1	73	53.333	ENSSPUG00000001136	-	52	54.571	Sphenodon_punctatus
ENSSDUG00000010651	pspc1	100	89.259	ENSSPAG00000001921	pspc1	100	87.407	Stegastes_partitus
ENSSDUG00000010651	pspc1	76	74.186	ENSSSCG00000009569	PSPC1	85	80.303	Sus_scrofa
ENSSDUG00000010651	pspc1	75	74.408	ENSTGUG00000011295	PSPC1	99	67.814	Taeniopygia_guttata
ENSSDUG00000010651	pspc1	100	71.009	ENSTRUG00000011335	pspc1	100	70.425	Takifugu_rubripes
ENSSDUG00000010651	pspc1	100	72.037	ENSTNIG00000010358	pspc1	100	71.296	Tetraodon_nigroviridis
ENSSDUG00000010651	pspc1	87	59.213	ENSTBEG00000002361	PSPC1	78	66.917	Tupaia_belangeri
ENSSDUG00000010651	pspc1	76	73.853	ENSTTRG00000003343	PSPC1	90	68.737	Tursiops_truncatus
ENSSDUG00000010651	pspc1	54	81.315	ENSUAMG00000012309	PSPC1	82	81.818	Ursus_americanus
ENSSDUG00000010651	pspc1	76	73.953	ENSUMAG00000013993	PSPC1	91	80.864	Ursus_maritimus
ENSSDUG00000010651	pspc1	64	74.457	ENSVPAG00000010029	PSPC1	100	68.213	Vicugna_pacos
ENSSDUG00000010651	pspc1	76	74.186	ENSVVUG00000006414	PSPC1	84	81.173	Vulpes_vulpes
ENSSDUG00000010651	pspc1	72	80.711	ENSXCOG00000017438	pspc1	93	78.680	Xiphophorus_couchianus
ENSSDUG00000010651	pspc1	72	80.964	ENSXMAG00000007929	pspc1	93	78.934	Xiphophorus_maculatus