EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000010749 (Gene tree)
Gene ID: 111222697
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 34152 bases
Position: chrBDQW01000105.1:1804674-1838825
Accession: 111222697
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000014733	R3H	PF01424.22	1.1e-12	1	1
ENSSDUP00000014711	R3H	PF01424.22	1.2e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000015015	-	3134	-	ENSSDUP00000014733	977 (aa)	-	-
ENSSDUT00000014993	-	3224	XM_022746505	ENSSDUP00000014711	1007 (aa)	XP_022602226	-

Gene Model

Click here to download ENSSDUG00000010749's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000010749's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000010749	r3hdm1	85	52.785	ENSSDUG00000019269	r3hdm2	86	50.585

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000010749	r3hdm1	91	62.766	ENSG00000048991	R3HDM1	99	63.492	Homo_sapiens
ENSSDUG00000010749	r3hdm1	100	85.142	ENSAPOG00000020850	r3hdm1	96	84.653	Acanthochromis_polyacanthus
ENSSDUG00000010749	r3hdm1	99	48.279	ENSAMEG00000014886	R3HDM1	89	47.764	Ailuropoda_melanoleuca
ENSSDUG00000010749	r3hdm1	100	84.703	ENSAOCG00000005192	r3hdm1	100	84.419	Amphiprion_ocellaris
ENSSDUG00000010749	r3hdm1	100	88.583	ENSAPEG00000016108	r3hdm1	100	88.277	Amphiprion_percula
ENSSDUG00000010749	r3hdm1	100	87.462	ENSATEG00000000232	r3hdm1	100	86.850	Anabas_testudineus
ENSSDUG00000010749	r3hdm1	99	46.987	ENSAPLG00000015231	R3HDM1	89	46.943	Anas_platyrhynchos
ENSSDUG00000010749	r3hdm1	99	46.697	ENSACAG00000001676	R3HDM1	89	45.993	Anolis_carolinensis
ENSSDUG00000010749	r3hdm1	91	63.032	ENSANAG00000035334	R3HDM1	87	63.032	Aotus_nancymaae
ENSSDUG00000010749	r3hdm1	100	87.922	ENSACLG00000027282	r3hdm1	100	87.410	Astatotilapia_calliptera
ENSSDUG00000010749	r3hdm1	98	50.294	ENSAMXG00000003536	r3hdm1	83	50.836	Astyanax_mexicanus
ENSSDUG00000010749	r3hdm1	91	64.734	ENSAMXG00000012861	R3HDM1	89	64.010	Astyanax_mexicanus
ENSSDUG00000010749	r3hdm1	99	47.200	ENSBTAG00000013302	R3HDM1	89	46.267	Bos_taurus
ENSSDUG00000010749	r3hdm1	91	62.766	ENSCJAG00000011718	R3HDM1	87	62.766	Callithrix_jacchus
ENSSDUG00000010749	r3hdm1	99	48.279	ENSCAFG00000005075	R3HDM1	89	47.678	Canis_familiaris
ENSSDUG00000010749	r3hdm1	99	48.279	ENSCAFG00020016119	R3HDM1	92	58.349	Canis_lupus_dingo
ENSSDUG00000010749	r3hdm1	99	47.897	ENSCHIG00000020851	R3HDM1	89	47.479	Capra_hircus
ENSSDUG00000010749	r3hdm1	99	46.389	ENSCPOG00000012784	R3HDM1	100	62.245	Cavia_porcellus
ENSSDUG00000010749	r3hdm1	91	62.500	ENSCCAG00000027199	R3HDM1	87	62.500	Cebus_capucinus
ENSSDUG00000010749	r3hdm1	97	58.969	ENSCATG00000023642	R3HDM1	87	62.766	Cercocebus_atys
ENSSDUG00000010749	r3hdm1	99	46.308	ENSCLAG00000007962	R3HDM1	100	63.946	Chinchilla_lanigera
ENSSDUG00000010749	r3hdm1	99	46.759	ENSCSAG00000016356	R3HDM1	89	46.260	Chlorocebus_sabaeus
ENSSDUG00000010749	r3hdm1	80	65.649	ENSCHOG00000013638	R3HDM1	69	65.649	Choloepus_hoffmanni
ENSSDUG00000010749	r3hdm1	81	70.397	ENSCPBG00000009645	R3HDM1	87	48.735	Chrysemys_picta_bellii
ENSSDUG00000010749	r3hdm1	91	62.500	ENSCANG00000034748	R3HDM1	87	62.500	Colobus_angolensis_palliatus
ENSSDUG00000010749	r3hdm1	99	45.841	ENSCGRG00001012357	R3hdm1	86	45.664	Cricetulus_griseus_chok1gshd
ENSSDUG00000010749	r3hdm1	99	47.137	ENSCGRG00000012080	R3hdm1	100	64.626	Cricetulus_griseus_crigri
ENSSDUG00000010749	r3hdm1	100	72.613	ENSCSEG00000008944	r3hdm1	100	73.442	Cynoglossus_semilaevis
ENSSDUG00000010749	r3hdm1	100	80.079	ENSCVAG00000007582	r3hdm1	100	79.487	Cyprinodon_variegatus
ENSSDUG00000010749	r3hdm1	99	46.059	ENSDNOG00000000771	R3HDM1	89	45.739	Dasypus_novemcinctus
ENSSDUG00000010749	r3hdm1	99	42.614	ENSETEG00000013606	R3HDM1	89	43.197	Echinops_telfairi
ENSSDUG00000010749	r3hdm1	99	47.897	ENSEASG00005007392	R3HDM1	89	47.383	Equus_asinus_asinus
ENSSDUG00000010749	r3hdm1	85	68.910	ENSECAG00000019114	R3HDM1	88	60.143	Equus_caballus
ENSSDUG00000010749	r3hdm1	57	53.728	ENSEEUG00000012589	R3HDM1	53	52.581	Erinaceus_europaeus
ENSSDUG00000010749	r3hdm1	56	59.754	ENSELUG00000014413	r3hdm1	83	51.908	Esox_lucius
ENSSDUG00000010749	r3hdm1	97	49.360	ENSELUG00000004909	R3HDM1	86	50.310	Esox_lucius
ENSSDUG00000010749	r3hdm1	99	48.255	ENSFCAG00000027113	R3HDM1	89	47.669	Felis_catus
ENSSDUG00000010749	r3hdm1	84	47.149	ENSFALG00000013731	R3HDM1	90	42.450	Ficedula_albicollis
ENSSDUG00000010749	r3hdm1	99	46.988	ENSFDAG00000016478	R3HDM1	100	65.306	Fukomys_damarensis
ENSSDUG00000010749	r3hdm1	100	77.346	ENSFHEG00000018713	r3hdm1	100	76.371	Fundulus_heteroclitus
ENSSDUG00000010749	r3hdm1	64	60.297	ENSGMOG00000006042	-	79	54.181	Gadus_morhua
ENSSDUG00000010749	r3hdm1	87	61.702	ENSGALG00000012246	R3HDM1	85	65.049	Gallus_gallus
ENSSDUG00000010749	r3hdm1	100	78.673	ENSGAFG00000006203	r3hdm1	100	78.776	Gambusia_affinis
ENSSDUG00000010749	r3hdm1	95	78.607	ENSGACG00000014925	r3hdm1	95	78.507	Gasterosteus_aculeatus
ENSSDUG00000010749	r3hdm1	85	66.879	ENSGAGG00000007840	R3HDM1	88	47.098	Gopherus_agassizii
ENSSDUG00000010749	r3hdm1	91	62.766	ENSGGOG00000008156	R3HDM1	87	62.766	Gorilla_gorilla
ENSSDUG00000010749	r3hdm1	54	87.906	ENSHBUG00000015737	R3HDM1	99	87.906	Haplochromis_burtoni
ENSSDUG00000010749	r3hdm1	99	46.994	ENSHGLG00000015718	R3HDM1	100	64.626	Heterocephalus_glaber_female
ENSSDUG00000010749	r3hdm1	99	46.901	ENSHGLG00100003184	-	100	64.966	Heterocephalus_glaber_male
ENSSDUG00000010749	r3hdm1	99	39.859	ENSHGLG00100015374	-	91	39.880	Heterocephalus_glaber_male
ENSSDUG00000010749	r3hdm1	100	70.133	ENSHCOG00000013366	r3hdm1	100	69.929	Hippocampus_comes
ENSSDUG00000010749	r3hdm1	100	48.067	ENSIPUG00000013629	r3hdm1	82	69.935	Ictalurus_punctatus
ENSSDUG00000010749	r3hdm1	100	52.243	ENSIPUG00000001676	R3HDM1	100	51.131	Ictalurus_punctatus
ENSSDUG00000010749	r3hdm1	99	48.279	ENSSTOG00000007572	R3HDM1	100	65.306	Ictidomys_tridecemlineatus
ENSSDUG00000010749	r3hdm1	95	49.031	ENSLACG00000005334	R3HDM1	88	48.738	Latimeria_chalumnae
ENSSDUG00000010749	r3hdm1	99	50.476	ENSLOCG00000001641	r3hdm1	90	49.171	Lepisosteus_oculatus
ENSSDUG00000010749	r3hdm1	99	46.339	ENSLAFG00000009065	R3HDM1	89	45.983	Loxodonta_africana
ENSSDUG00000010749	r3hdm1	85	69.231	ENSMFAG00000030331	R3HDM1	87	62.766	Macaca_fascicularis
ENSSDUG00000010749	r3hdm1	91	62.766	ENSMMUG00000009844	R3HDM1	87	62.766	Macaca_mulatta
ENSSDUG00000010749	r3hdm1	85	69.231	ENSMNEG00000027793	R3HDM1	87	62.766	Macaca_nemestrina
ENSSDUG00000010749	r3hdm1	91	62.766	ENSMLEG00000043189	R3HDM1	87	62.766	Mandrillus_leucophaeus
ENSSDUG00000010749	r3hdm1	100	86.278	ENSMAMG00000004532	r3hdm1	100	85.785	Mastacembelus_armatus
ENSSDUG00000010749	r3hdm1	100	87.648	ENSMZEG00005003157	r3hdm1	100	87.154	Maylandia_zebra
ENSSDUG00000010749	r3hdm1	96	48.039	ENSMGAG00000012461	R3HDM1	88	46.987	Meleagris_gallopavo
ENSSDUG00000010749	r3hdm1	99	46.488	ENSMAUG00000010315	R3hdm1	100	64.626	Mesocricetus_auratus
ENSSDUG00000010749	r3hdm1	91	62.234	ENSMICG00000042655	-	92	62.234	Microcebus_murinus
ENSSDUG00000010749	r3hdm1	91	62.500	ENSMICG00000005900	-	87	62.500	Microcebus_murinus
ENSSDUG00000010749	r3hdm1	99	44.215	ENSMODG00000000923	R3HDM1	94	43.727	Monodelphis_domestica
ENSSDUG00000010749	r3hdm1	100	86.905	ENSMALG00000009000	r3hdm1	90	86.607	Monopterus_albus
ENSSDUG00000010749	r3hdm1	99	45.696	MGP_CAROLIEiJ_G0014543	R3hdm1	100	64.626	Mus_caroli
ENSSDUG00000010749	r3hdm1	99	45.421	ENSMUSG00000056211	R3hdm1	100	64.626	Mus_musculus
ENSSDUG00000010749	r3hdm1	99	45.238	MGP_PahariEiJ_G0027779	R3hdm1	100	64.626	Mus_pahari
ENSSDUG00000010749	r3hdm1	99	45.604	MGP_SPRETEiJ_G0015350	R3hdm1	100	64.626	Mus_spretus
ENSSDUG00000010749	r3hdm1	99	47.992	ENSMPUG00000002412	R3HDM1	89	47.669	Mustela_putorius_furo
ENSSDUG00000010749	r3hdm1	99	47.569	ENSMLUG00000013824	R3HDM1	89	47.104	Myotis_lucifugus
ENSSDUG00000010749	r3hdm1	91	62.766	ENSNLEG00000008622	R3HDM1	87	62.766	Nomascus_leucogenys
ENSSDUG00000010749	r3hdm1	90	43.251	ENSMEUG00000011784	R3HDM1	88	42.921	Notamacropus_eugenii
ENSSDUG00000010749	r3hdm1	99	45.556	ENSODEG00000008607	R3HDM1	100	64.626	Octodon_degus
ENSSDUG00000010749	r3hdm1	95	86.401	ENSONIG00000012017	r3hdm1	89	85.992	Oreochromis_niloticus
ENSSDUG00000010749	r3hdm1	99	45.619	ENSOANG00000007987	R3HDM1	89	45.685	Ornithorhynchus_anatinus
ENSSDUG00000010749	r3hdm1	99	48.088	ENSOCUG00000017366	R3HDM1	97	47.954	Oryctolagus_cuniculus
ENSSDUG00000010749	r3hdm1	100	74.131	ENSORLG00000004297	r3hdm1	100	74.335	Oryzias_latipes
ENSSDUG00000010749	r3hdm1	100	74.605	ENSORLG00015017355	r3hdm1	100	74.802	Oryzias_latipes_hsok
ENSSDUG00000010749	r3hdm1	53	81.447	ENSOMEG00000003882	-	99	81.633	Oryzias_melastigma
ENSSDUG00000010749	r3hdm1	99	48.084	ENSOGAG00000003136	R3HDM1	89	48.187	Otolemur_garnettii
ENSSDUG00000010749	r3hdm1	99	48.088	ENSOARG00000010788	R3HDM1	89	47.710	Ovis_aries
ENSSDUG00000010749	r3hdm1	91	62.766	ENSPPAG00000027858	R3HDM1	87	62.766	Pan_paniscus
ENSSDUG00000010749	r3hdm1	91	62.234	ENSPPRG00000002626	R3HDM1	87	62.234	Panthera_pardus
ENSSDUG00000010749	r3hdm1	91	62.500	ENSPTIG00000016581	R3HDM1	87	62.500	Panthera_tigris_altaica
ENSSDUG00000010749	r3hdm1	91	62.766	ENSPTRG00000012494	R3HDM1	87	62.766	Pan_troglodytes
ENSSDUG00000010749	r3hdm1	91	62.766	ENSPANG00000026448	R3HDM1	87	62.766	Papio_anubis
ENSSDUG00000010749	r3hdm1	90	65.826	ENSPKIG00000004328	r3hdm1	78	72.697	Paramormyrops_kingsleyae
ENSSDUG00000010749	r3hdm1	99	46.724	ENSPSIG00000012915	R3HDM1	88	47.053	Pelodiscus_sinensis
ENSSDUG00000010749	r3hdm1	99	45.879	ENSPEMG00000015187	R3hdm1	100	64.626	Peromyscus_maniculatus_bairdii
ENSSDUG00000010749	r3hdm1	55	48.034	ENSPMAG00000003369	-	94	39.752	Petromyzon_marinus
ENSSDUG00000010749	r3hdm1	85	67.628	ENSPCIG00000002491	R3HDM1	89	46.038	Phascolarctos_cinereus
ENSSDUG00000010749	r3hdm1	100	75.495	ENSPFOG00000015036	r3hdm1	100	75.260	Poecilia_formosa
ENSSDUG00000010749	r3hdm1	100	78.739	ENSPLAG00000018042	r3hdm1	100	78.491	Poecilia_latipinna
ENSSDUG00000010749	r3hdm1	100	78.557	ENSPMEG00000023947	r3hdm1	100	78.310	Poecilia_mexicana
ENSSDUG00000010749	r3hdm1	100	78.980	ENSPREG00000007902	r3hdm1	100	78.550	Poecilia_reticulata
ENSSDUG00000010749	r3hdm1	99	47.193	ENSPPYG00000012815	R3HDM1	89	47.148	Pongo_abelii
ENSSDUG00000010749	r3hdm1	80	70.306	ENSPCAG00000006208	R3HDM1	65	70.000	Procavia_capensis
ENSSDUG00000010749	r3hdm1	91	57.364	ENSPCOG00000012698	R3HDM1	85	63.063	Propithecus_coquereli
ENSSDUG00000010749	r3hdm1	99	42.830	ENSPVAG00000006098	R3HDM1	89	41.849	Pteropus_vampyrus
ENSSDUG00000010749	r3hdm1	98	50.246	ENSPNAG00000013952	r3hdm1	83	51.700	Pygocentrus_nattereri
ENSSDUG00000010749	r3hdm1	85	72.549	ENSPNAG00000005436	R3HDM1	87	71.569	Pygocentrus_nattereri
ENSSDUG00000010749	r3hdm1	99	45.505	ENSRNOG00000004099	R3hdm1	89	45.463	Rattus_norvegicus
ENSSDUG00000010749	r3hdm1	81	72.202	ENSRBIG00000033317	R3HDM1	86	72.202	Rhinopithecus_bieti
ENSSDUG00000010749	r3hdm1	91	62.766	ENSRROG00000034534	R3HDM1	87	62.766	Rhinopithecus_roxellana
ENSSDUG00000010749	r3hdm1	91	63.298	ENSSBOG00000020389	R3HDM1	87	63.298	Saimiri_boliviensis_boliviensis
ENSSDUG00000010749	r3hdm1	99	47.024	ENSSHAG00000016999	R3HDM1	89	46.679	Sarcophilus_harrisii
ENSSDUG00000010749	r3hdm1	100	48.201	ENSSFOG00015019851	-	89	57.418	Scleropages_formosus
ENSSDUG00000010749	r3hdm1	86	72.611	ENSSFOG00015014134	r3hdm1	88	64.146	Scleropages_formosus
ENSSDUG00000010749	r3hdm1	100	86.119	ENSSMAG00000001669	r3hdm1	90	85.728	Scophthalmus_maximus
ENSSDUG00000010749	r3hdm1	100	97.730	ENSSLDG00000004499	r3hdm1	90	97.730	Seriola_lalandi_dorsalis
ENSSDUG00000010749	r3hdm1	57	53.094	ENSSARG00000000352	-	50	52.443	Sorex_araneus
ENSSDUG00000010749	r3hdm1	99	46.610	ENSSPUG00000004167	R3HDM1	88	47.719	Sphenodon_punctatus
ENSSDUG00000010749	r3hdm1	100	90.900	ENSSPAG00000004648	r3hdm1	100	90.702	Stegastes_partitus
ENSSDUG00000010749	r3hdm1	91	59.517	ENSSSCG00000015692	R3HDM1	87	59.517	Sus_scrofa
ENSSDUG00000010749	r3hdm1	96	47.937	ENSTGUG00000011750	R3HDM1	89	47.147	Taeniopygia_guttata
ENSSDUG00000010749	r3hdm1	100	78.090	ENSTRUG00000011654	r3hdm1	99	77.588	Takifugu_rubripes
ENSSDUG00000010749	r3hdm1	97	71.841	ENSTNIG00000010362	r3hdm1	98	71.940	Tetraodon_nigroviridis
ENSSDUG00000010749	r3hdm1	81	51.365	ENSTTRG00000003935	R3HDM1	68	50.801	Tursiops_truncatus
ENSSDUG00000010749	r3hdm1	71	63.298	ENSUAMG00000024806	R3HDM1	96	62.500	Ursus_americanus
ENSSDUG00000010749	r3hdm1	91	62.500	ENSUMAG00000005552	R3HDM1	87	62.500	Ursus_maritimus
ENSSDUG00000010749	r3hdm1	87	48.741	ENSVPAG00000007333	R3HDM1	74	47.836	Vicugna_pacos
ENSSDUG00000010749	r3hdm1	99	48.554	ENSVVUG00000006457	R3HDM1	88	48.064	Vulpes_vulpes
ENSSDUG00000010749	r3hdm1	99	43.165	ENSXETG00000019330	r3hdm1	91	45.343	Xenopus_tropicalis
ENSSDUG00000010749	r3hdm1	78	74.675	ENSXCOG00000017448	r3hdm1	93	74.805	Xiphophorus_couchianus
ENSSDUG00000010749	r3hdm1	100	78.163	ENSXMAG00000007885	r3hdm1	97	78.265	Xiphophorus_maculatus