EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000010808 (Gene tree)
Gene ID: 111227160
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 5791 bases
Position: chrBDQW01000169.1:3040773-3046563
Accession: 111227160
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000014806	MMR_HSR1	PF01926.23	1.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000015090	-	1365	XM_022752577	ENSSDUP00000014806	454 (aa)	XP_022608298	-

Gene Model

Click here to download ENSSDUG00000010808's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000010808's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000010808	srl	54	37.959	ENSSDUG00000020042	-	52	35.943
ENSSDUG00000010808	srl	82	34.048	ENSSDUG00000010820	ehd3	69	34.286
ENSSDUG00000010808	srl	98	77.333	ENSSDUG00000009161	SRL	99	77.333
ENSSDUG00000010808	srl	88	32.010	ENSSDUG00000010947	ehd4	71	32.010
ENSSDUG00000010808	srl	85	32.474	ENSSDUG00000016436	ehd1a	70	32.474
ENSSDUG00000010808	srl	90	33.007	ENSSDUG00000000141	ehd2b	74	33.007

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000010808	srl	97	83.484	ENSG00000185739	SRL	99	83.953	Homo_sapiens
ENSSDUG00000010808	srl	98	77.201	ENSAPOG00000012432	SRL	99	77.201	Acanthochromis_polyacanthus
ENSSDUG00000010808	srl	98	97.523	ENSAPOG00000018093	srl	99	97.279	Acanthochromis_polyacanthus
ENSSDUG00000010808	srl	97	83.258	ENSAMEG00000010862	SRL	50	83.258	Ailuropoda_melanoleuca
ENSSDUG00000010808	srl	98	76.126	ENSACIG00000015419	SRL	99	76.126	Amphilophus_citrinellus
ENSSDUG00000010808	srl	98	96.861	ENSACIG00000015799	srl	99	96.861	Amphilophus_citrinellus
ENSSDUG00000010808	srl	96	97.696	ENSAOCG00000007574	srl	100	97.696	Amphiprion_ocellaris
ENSSDUG00000010808	srl	98	77.477	ENSAOCG00000017049	SRL	97	77.703	Amphiprion_ocellaris
ENSSDUG00000010808	srl	98	73.363	ENSAPEG00000006533	SRL	96	74.550	Amphiprion_percula
ENSSDUG00000010808	srl	98	97.748	ENSAPEG00000006911	srl	94	97.748	Amphiprion_percula
ENSSDUG00000010808	srl	98	76.535	ENSATEG00000009643	SRL	52	76.754	Anabas_testudineus
ENSSDUG00000010808	srl	98	97.748	ENSATEG00000024315	srl	94	97.748	Anabas_testudineus
ENSSDUG00000010808	srl	97	82.781	ENSACAG00000016380	SRL	84	82.456	Anolis_carolinensis
ENSSDUG00000010808	srl	98	96.861	ENSACLG00000027685	srl	98	96.861	Astatotilapia_calliptera
ENSSDUG00000010808	srl	98	75.219	ENSACLG00000024674	SRL	57	75.219	Astatotilapia_calliptera
ENSSDUG00000010808	srl	98	93.228	ENSAMXG00000018789	srl	87	93.228	Astyanax_mexicanus
ENSSDUG00000010808	srl	93	77.381	ENSAMXG00000038693	SRL	100	73.510	Astyanax_mexicanus
ENSSDUG00000010808	srl	97	83.900	ENSBTAG00000001078	SRL	56	83.900	Bos_taurus
ENSSDUG00000010808	srl	97	83.484	ENSCJAG00000019750	SRL	93	83.484	Callithrix_jacchus
ENSSDUG00000010808	srl	97	83.258	ENSCAFG00000019233	SRL	82	83.258	Canis_familiaris
ENSSDUG00000010808	srl	97	83.258	ENSCAFG00020025024	SRL	54	83.258	Canis_lupus_dingo
ENSSDUG00000010808	srl	97	83.900	ENSCHIG00000017927	SRL	55	83.900	Capra_hircus
ENSSDUG00000010808	srl	97	83.937	ENSTSYG00000007919	SRL	99	84.651	Carlito_syrichta
ENSSDUG00000010808	srl	97	83.710	ENSCPOG00000012643	SRL	94	83.710	Cavia_porcellus
ENSSDUG00000010808	srl	97	78.054	ENSCCAG00000032646	SRL	100	85.224	Cebus_capucinus
ENSSDUG00000010808	srl	97	83.484	ENSCATG00000032227	-	93	83.484	Cercocebus_atys
ENSSDUG00000010808	srl	97	83.937	ENSCLAG00000016242	SRL	94	83.937	Chinchilla_lanigera
ENSSDUG00000010808	srl	85	86.753	ENSCHOG00000001618	SRL	52	86.753	Choloepus_hoffmanni
ENSSDUG00000010808	srl	97	86.269	ENSCPBG00000026371	SRL	93	81.637	Chrysemys_picta_bellii
ENSSDUG00000010808	srl	92	59.712	ENSCING00000005231	-	93	59.712	Ciona_intestinalis
ENSSDUG00000010808	srl	97	83.484	ENSCANG00000035872	SRL	99	83.953	Colobus_angolensis_palliatus
ENSSDUG00000010808	srl	97	84.615	ENSCGRG00001016630	Srl	94	84.615	Cricetulus_griseus_chok1gshd
ENSSDUG00000010808	srl	97	84.615	ENSCGRG00000005458	Srl	94	84.615	Cricetulus_griseus_crigri
ENSSDUG00000010808	srl	98	95.964	ENSCSEG00000016151	srl	95	95.964	Cynoglossus_semilaevis
ENSSDUG00000010808	srl	98	75.450	ENSCSEG00000011866	SRL	89	75.676	Cynoglossus_semilaevis
ENSSDUG00000010808	srl	98	96.388	ENSCVAG00000003513	srl	96	96.388	Cyprinodon_variegatus
ENSSDUG00000010808	srl	98	76.535	ENSCVAG00000022465	SRL	60	76.535	Cyprinodon_variegatus
ENSSDUG00000010808	srl	83	78.906	ENSDARG00000112959	CABZ01072309.1	100	78.906	Danio_rerio
ENSSDUG00000010808	srl	98	93.694	ENSDARG00000104587	srl	94	93.694	Danio_rerio
ENSSDUG00000010808	srl	97	83.710	ENSDNOG00000011643	SRL	53	83.710	Dasypus_novemcinctus
ENSSDUG00000010808	srl	97	84.389	ENSDORG00000014807	Srl	94	84.389	Dipodomys_ordii
ENSSDUG00000010808	srl	82	65.508	ENSEBUG00000015937	srl	94	65.508	Eptatretus_burgeri
ENSSDUG00000010808	srl	97	83.900	ENSEASG00005000942	SRL	53	83.900	Equus_asinus_asinus
ENSSDUG00000010808	srl	97	83.900	ENSECAG00000024219	SRL	93	83.900	Equus_caballus
ENSSDUG00000010808	srl	98	86.900	ENSELUG00000015616	srl	94	86.900	Esox_lucius
ENSSDUG00000010808	srl	97	83.032	ENSFCAG00000022075	SRL	93	83.032	Felis_catus
ENSSDUG00000010808	srl	97	83.864	ENSFALG00000004328	SRL	63	83.864	Ficedula_albicollis
ENSSDUG00000010808	srl	97	84.615	ENSFDAG00000006199	SRL	94	84.615	Fukomys_damarensis
ENSSDUG00000010808	srl	98	77.130	ENSFHEG00000011854	SRL	99	77.354	Fundulus_heteroclitus
ENSSDUG00000010808	srl	98	96.171	ENSFHEG00000011239	srl	96	96.171	Fundulus_heteroclitus
ENSSDUG00000010808	srl	97	89.868	ENSGMOG00000014954	srl	100	89.868	Gadus_morhua
ENSSDUG00000010808	srl	97	84.091	ENSGALG00000038884	SRL	93	84.091	Gallus_gallus
ENSSDUG00000010808	srl	98	96.396	ENSGAFG00000000010	srl	96	96.396	Gambusia_affinis
ENSSDUG00000010808	srl	98	78.700	ENSGAFG00000016984	SRL	99	78.700	Gambusia_affinis
ENSSDUG00000010808	srl	98	94.505	ENSGACG00000011332	srl	100	94.505	Gasterosteus_aculeatus
ENSSDUG00000010808	srl	97	83.484	ENSGGOG00000011312	-	93	83.484	Gorilla_gorilla
ENSSDUG00000010808	srl	98	75.658	ENSHBUG00000015710	SRL	57	75.658	Haplochromis_burtoni
ENSSDUG00000010808	srl	98	96.861	ENSHBUG00000007581	srl	98	96.861	Haplochromis_burtoni
ENSSDUG00000010808	srl	97	84.389	ENSHGLG00000015271	SRL	94	84.389	Heterocephalus_glaber_female
ENSSDUG00000010808	srl	97	84.389	ENSHGLG00100019378	SRL	94	84.389	Heterocephalus_glaber_male
ENSSDUG00000010808	srl	98	97.297	ENSHCOG00000008687	srl	98	97.297	Hippocampus_comes
ENSSDUG00000010808	srl	98	75.165	ENSHCOG00000001012	SRL	50	75.165	Hippocampus_comes
ENSSDUG00000010808	srl	96	69.954	ENSIPUG00000011609	SRL	95	69.954	Ictalurus_punctatus
ENSSDUG00000010808	srl	98	92.342	ENSIPUG00000012513	srl	95	92.342	Ictalurus_punctatus
ENSSDUG00000010808	srl	97	84.163	ENSSTOG00000021151	-	94	84.163	Ictidomys_tridecemlineatus
ENSSDUG00000010808	srl	97	84.842	ENSJJAG00000016400	Srl	94	84.842	Jaculus_jaculus
ENSSDUG00000010808	srl	97	76.871	ENSKMAG00000019537	SRL	100	76.871	Kryptolebias_marmoratus
ENSSDUG00000010808	srl	96	96.774	ENSKMAG00000014115	srl	93	97.387	Kryptolebias_marmoratus
ENSSDUG00000010808	srl	97	76.018	ENSLBEG00000013811	SRL	95	76.244	Labrus_bergylta
ENSSDUG00000010808	srl	98	97.523	ENSLBEG00000026643	srl	94	97.523	Labrus_bergylta
ENSSDUG00000010808	srl	97	85.068	ENSLACG00000002825	SRL	98	85.068	Latimeria_chalumnae
ENSSDUG00000010808	srl	99	89.062	ENSLOCG00000002644	srl	96	89.062	Lepisosteus_oculatus
ENSSDUG00000010808	srl	97	83.258	ENSLAFG00000006329	SRL	50	83.258	Loxodonta_africana
ENSSDUG00000010808	srl	95	83.953	ENSMFAG00000037383	SRL	99	83.953	Macaca_fascicularis
ENSSDUG00000010808	srl	97	83.484	ENSMNEG00000019236	-	93	83.484	Macaca_nemestrina
ENSSDUG00000010808	srl	97	76.471	ENSMLEG00000032156	SRL	93	76.471	Mandrillus_leucophaeus
ENSSDUG00000010808	srl	97	75.551	ENSMAMG00000013756	SRL	53	75.551	Mastacembelus_armatus
ENSSDUG00000010808	srl	98	97.297	ENSMAMG00000023322	srl	94	97.297	Mastacembelus_armatus
ENSSDUG00000010808	srl	98	96.861	ENSMZEG00005004548	srl	98	96.861	Maylandia_zebra
ENSSDUG00000010808	srl	98	75.439	ENSMZEG00005004010	SRL	57	75.439	Maylandia_zebra
ENSSDUG00000010808	srl	97	84.091	ENSMGAG00000009342	SRL	92	86.027	Meleagris_gallopavo
ENSSDUG00000010808	srl	98	83.747	ENSMICG00000032307	SRL	94	83.747	Microcebus_murinus
ENSSDUG00000010808	srl	97	83.937	ENSMOCG00000008208	Srl	94	83.937	Microtus_ochrogaster
ENSSDUG00000010808	srl	98	95.946	ENSMMOG00000013970	srl	99	95.946	Mola_mola
ENSSDUG00000010808	srl	97	74.505	ENSMMOG00000021572	SRL	99	74.505	Mola_mola
ENSSDUG00000010808	srl	97	84.807	ENSMODG00000016380	-	50	84.807	Monodelphis_domestica
ENSSDUG00000010808	srl	98	96.388	ENSMALG00000005039	srl	98	96.388	Monopterus_albus
ENSSDUG00000010808	srl	92	77.804	ENSMALG00000000670	SRL	98	77.804	Monopterus_albus
ENSSDUG00000010808	srl	97	85.294	MGP_CAROLIEiJ_G0020400	Srl	94	85.294	Mus_caroli
ENSSDUG00000010808	srl	97	85.294	ENSMUSG00000022519	Srl	94	85.294	Mus_musculus
ENSSDUG00000010808	srl	97	85.294	MGP_SPRETEiJ_G0021294	Srl	94	85.294	Mus_spretus
ENSSDUG00000010808	srl	97	83.258	ENSMPUG00000015025	SRL	54	83.258	Mustela_putorius_furo
ENSSDUG00000010808	srl	97	84.163	ENSMLUG00000030733	SRL	56	84.163	Myotis_lucifugus
ENSSDUG00000010808	srl	97	85.068	ENSNGAG00000019741	Srl	94	85.068	Nannospalax_galili
ENSSDUG00000010808	srl	98	74.781	ENSNBRG00000002422	SRL	56	76.389	Neolamprologus_brichardi
ENSSDUG00000010808	srl	98	96.861	ENSNBRG00000023775	srl	95	96.861	Neolamprologus_brichardi
ENSSDUG00000010808	srl	97	77.828	ENSNLEG00000029051	SRL	93	77.828	Nomascus_leucogenys
ENSSDUG00000010808	srl	97	77.828	ENSOPRG00000000477	-	52	77.828	Ochotona_princeps
ENSSDUG00000010808	srl	97	84.389	ENSODEG00000013256	SRL	94	84.389	Octodon_degus
ENSSDUG00000010808	srl	98	96.861	ENSONIG00000005192	srl	95	96.861	Oreochromis_niloticus
ENSSDUG00000010808	srl	98	74.775	ENSORLG00000015064	SRL	97	74.775	Oryzias_latipes
ENSSDUG00000010808	srl	98	96.847	ENSORLG00000008291	srl	92	97.423	Oryzias_latipes
ENSSDUG00000010808	srl	98	97.297	ENSORLG00020019784	srl	80	97.297	Oryzias_latipes_hni
ENSSDUG00000010808	srl	98	75.000	ENSORLG00020018173	SRL	97	75.000	Oryzias_latipes_hni
ENSSDUG00000010808	srl	98	96.847	ENSORLG00015009342	srl	91	96.847	Oryzias_latipes_hsok
ENSSDUG00000010808	srl	98	75.000	ENSORLG00015019063	SRL	97	75.000	Oryzias_latipes_hsok
ENSSDUG00000010808	srl	98	96.622	ENSOMEG00000010006	srl	98	96.591	Oryzias_melastigma
ENSSDUG00000010808	srl	98	73.684	ENSOMEG00000005682	SRL	53	73.961	Oryzias_melastigma
ENSSDUG00000010808	srl	98	82.883	ENSOGAG00000029266	SRL	54	82.883	Otolemur_garnettii
ENSSDUG00000010808	srl	97	83.900	ENSOARG00000003074	SRL	55	83.900	Ovis_aries
ENSSDUG00000010808	srl	97	83.484	ENSPPAG00000024919	-	99	83.953	Pan_paniscus
ENSSDUG00000010808	srl	97	83.032	ENSPPRG00000010274	SRL	99	83.721	Panthera_pardus
ENSSDUG00000010808	srl	97	83.032	ENSPTIG00000015162	SRL	99	83.721	Panthera_tigris_altaica
ENSSDUG00000010808	srl	97	83.484	ENSPTRG00000007712	SRL	99	83.953	Pan_troglodytes
ENSSDUG00000010808	srl	97	83.484	ENSPANG00000013804	SRL	95	83.484	Papio_anubis
ENSSDUG00000010808	srl	98	91.928	ENSPKIG00000006405	srl	94	91.928	Paramormyrops_kingsleyae
ENSSDUG00000010808	srl	100	79.295	ENSPKIG00000024974	SRL	90	79.295	Paramormyrops_kingsleyae
ENSSDUG00000010808	srl	98	82.844	ENSPSIG00000008586	SRL	50	82.844	Pelodiscus_sinensis
ENSSDUG00000010808	srl	97	95.249	ENSPMGG00000021081	srl	95	95.249	Periophthalmus_magnuspinnatus
ENSSDUG00000010808	srl	98	75.395	ENSPMGG00000023505	-	100	75.395	Periophthalmus_magnuspinnatus
ENSSDUG00000010808	srl	97	84.163	ENSPEMG00000015842	Srl	94	84.163	Peromyscus_maniculatus_bairdii
ENSSDUG00000010808	srl	93	67.661	ENSPMAG00000004786	srl	99	67.661	Petromyzon_marinus
ENSSDUG00000010808	srl	97	84.354	ENSPCIG00000012128	SRL	96	84.354	Phascolarctos_cinereus
ENSSDUG00000010808	srl	98	94.079	ENSPFOG00000011408	srl	94	94.066	Poecilia_formosa
ENSSDUG00000010808	srl	98	77.354	ENSPLAG00000002932	SRL	99	77.354	Poecilia_latipinna
ENSSDUG00000010808	srl	98	96.622	ENSPLAG00000008017	srl	96	96.622	Poecilia_latipinna
ENSSDUG00000010808	srl	98	75.817	ENSPMEG00000005890	SRL	60	75.381	Poecilia_mexicana
ENSSDUG00000010808	srl	98	96.622	ENSPMEG00000006745	srl	96	96.622	Poecilia_mexicana
ENSSDUG00000010808	srl	98	78.251	ENSPREG00000000315	SRL	99	78.251	Poecilia_reticulata
ENSSDUG00000010808	srl	98	96.847	ENSPREG00000007751	srl	98	96.847	Poecilia_reticulata
ENSSDUG00000010808	srl	92	85.442	ENSPPYG00000007053	SRL	98	85.442	Pongo_abelii
ENSSDUG00000010808	srl	97	84.354	ENSPCAG00000003378	-	50	84.354	Procavia_capensis
ENSSDUG00000010808	srl	98	83.747	ENSPCOG00000023135	SRL	99	84.651	Propithecus_coquereli
ENSSDUG00000010808	srl	97	83.937	ENSPVAG00000006586	SRL	54	83.937	Pteropus_vampyrus
ENSSDUG00000010808	srl	98	75.439	ENSPNYG00000003423	SRL	57	75.439	Pundamilia_nyererei
ENSSDUG00000010808	srl	98	96.637	ENSPNYG00000001200	srl	98	96.637	Pundamilia_nyererei
ENSSDUG00000010808	srl	98	93.243	ENSPNAG00000023106	srl	94	93.243	Pygocentrus_nattereri
ENSSDUG00000010808	srl	97	75.737	ENSPNAG00000007361	-	91	75.737	Pygocentrus_nattereri
ENSSDUG00000010808	srl	97	83.484	ENSSBOG00000029273	SRL	93	83.484	Saimiri_boliviensis_boliviensis
ENSSDUG00000010808	srl	98	77.354	ENSSFOG00015021327	SRL	50	77.354	Scleropages_formosus
ENSSDUG00000010808	srl	98	92.793	ENSSFOG00015009773	srl	96	91.410	Scleropages_formosus
ENSSDUG00000010808	srl	98	95.740	ENSSMAG00000016274	srl	98	95.740	Scophthalmus_maximus
ENSSDUG00000010808	srl	99	73.820	ENSSMAG00000002232	SRL	50	73.820	Scophthalmus_maximus
ENSSDUG00000010808	srl	98	77.074	ENSSLDG00000014601	SRL	100	77.632	Seriola_lalandi_dorsalis
ENSSDUG00000010808	srl	98	100.000	ENSSLDG00000022024	srl	96	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000010808	srl	98	83.146	ENSSPUG00000016859	SRL	98	83.146	Sphenodon_punctatus
ENSSDUG00000010808	srl	98	97.968	ENSSPAG00000019105	srl	94	97.968	Stegastes_partitus
ENSSDUG00000010808	srl	97	78.912	ENSSPAG00000014254	SRL	98	78.912	Stegastes_partitus
ENSSDUG00000010808	srl	97	83.673	ENSSSCG00000007949	SRL	98	83.673	Sus_scrofa
ENSSDUG00000010808	srl	97	84.091	ENSTGUG00000003951	-	97	84.091	Taeniopygia_guttata
ENSSDUG00000010808	srl	80	86.740	ENSTGUG00000016121	-	100	86.740	Taeniopygia_guttata
ENSSDUG00000010808	srl	92	78.520	ENSTRUG00000013310	SRL	55	78.520	Takifugu_rubripes
ENSSDUG00000010808	srl	98	96.171	ENSTRUG00000006005	srl	94	96.171	Takifugu_rubripes
ENSSDUG00000010808	srl	98	96.171	ENSTNIG00000009739	srl	94	96.171	Tetraodon_nigroviridis
ENSSDUG00000010808	srl	97	83.258	ENSUAMG00000005701	SRL	55	83.258	Ursus_americanus
ENSSDUG00000010808	srl	97	83.258	ENSUMAG00000002574	SRL	55	83.258	Ursus_maritimus
ENSSDUG00000010808	srl	98	82.619	ENSXETG00000017313	srl	98	82.619	Xenopus_tropicalis
ENSSDUG00000010808	srl	93	95.962	ENSXCOG00000010424	srl	97	95.962	Xiphophorus_couchianus
ENSSDUG00000010808	srl	98	78.475	ENSXCOG00000014584	SRL	99	78.475	Xiphophorus_couchianus
ENSSDUG00000010808	srl	98	76.035	ENSXMAG00000027598	SRL	63	76.035	Xiphophorus_maculatus
ENSSDUG00000010808	srl	98	96.396	ENSXMAG00000004625	srl	90	96.396	Xiphophorus_maculatus