EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000010922 (Gene tree)
Gene ID: 111228823
Gene Symbol: -
Alias: -
Full Name: nucleolin-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 6555 bases
Position: chrBDQW01000226.1:2662452-2669006
Accession: 111228823
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000014980	RRM_1	PF00076.22	4.9e-40	1	3
ENSSDUP00000014980	RRM_1	PF00076.22	4.9e-40	2	3
ENSSDUP00000014980	RRM_1	PF00076.22	4.9e-40	3	3
ENSSDUP00000014950	RRM_1	PF00076.22	9.2e-40	1	3
ENSSDUP00000014950	RRM_1	PF00076.22	9.2e-40	2	3
ENSSDUP00000014950	RRM_1	PF00076.22	9.2e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000015234	-	2118	XM_022754903	ENSSDUP00000014950	592 (aa)	XP_022610624	UPI000BBEDD9E
ENSSDUT00000015264	-	1971	XM_022754904	ENSSDUP00000014980	543 (aa)	XP_022610625	UPI000BBE4485

Gene Model

Click here to download ENSSDUG00000010922's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000010922's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000010922	-	70	44.416	ENSSDUG00000006128	ncl	92	42.823
ENSSDUG00000010922	-	61	31.469	ENSSDUG00000011965	pabpc1b	59	30.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000010922	-	70	44.156	ENSAPOG00000023888	ncl	69	40.000	Acanthochromis_polyacanthus
ENSSDUG00000010922	-	95	60.905	ENSAPOG00000014534	-	92	60.381	Acanthochromis_polyacanthus
ENSSDUG00000010922	-	70	43.717	ENSACIG00000013234	ncl	65	43.210	Amphilophus_citrinellus
ENSSDUG00000010922	-	95	62.527	ENSAOCG00000014792	-	92	62.472	Amphiprion_ocellaris
ENSSDUG00000010922	-	82	43.636	ENSAOCG00000003133	ncl	65	40.084	Amphiprion_ocellaris
ENSSDUG00000010922	-	95	62.527	ENSAPEG00000013612	-	92	62.914	Amphiprion_percula
ENSSDUG00000010922	-	70	43.636	ENSAPEG00000002769	ncl	65	40.377	Amphiprion_percula
ENSSDUG00000010922	-	88	43.632	ENSATEG00000013343	ncl	69	41.566	Anabas_testudineus
ENSSDUG00000010922	-	99	62.257	ENSATEG00000019862	-	100	60.531	Anabas_testudineus
ENSSDUG00000010922	-	71	39.295	ENSAPLG00000012897	-	67	40.995	Anas_platyrhynchos
ENSSDUG00000010922	-	67	41.444	ENSACAG00000001006	-	50	41.270	Anolis_carolinensis
ENSSDUG00000010922	-	59	44.340	ENSACLG00000026031	ncl	87	43.917	Astatotilapia_calliptera
ENSSDUG00000010922	-	76	41.667	ENSAMXG00000001647	ncl	84	43.119	Astyanax_mexicanus
ENSSDUG00000010922	-	66	32.591	ENSCHIG00000012665	-	52	31.903	Capra_hircus
ENSSDUG00000010922	-	71	41.294	ENSCPBG00000016444	-	72	37.426	Chrysemys_picta_bellii
ENSSDUG00000010922	-	70	43.750	ENSCSEG00000015089	ncl	79	43.059	Cynoglossus_semilaevis
ENSSDUG00000010922	-	70	41.995	ENSCVAG00000012600	ncl	72	37.121	Cyprinodon_variegatus
ENSSDUG00000010922	-	69	43.617	ENSDARG00000002710	ncl	85	44.092	Danio_rerio
ENSSDUG00000010922	-	66	35.083	ENSDNOG00000040257	-	79	32.365	Dasypus_novemcinctus
ENSSDUG00000010922	-	66	32.410	ENSDNOG00000031611	-	87	30.769	Dasypus_novemcinctus
ENSSDUG00000010922	-	73	36.341	ENSEBUG00000016173	ncl	65	35.747	Eptatretus_burgeri
ENSSDUG00000010922	-	79	47.742	ENSELUG00000022826	-	81	50.249	Esox_lucius
ENSSDUG00000010922	-	71	44.784	ENSELUG00000006033	ncl	69	41.996	Esox_lucius
ENSSDUG00000010922	-	70	41.058	ENSFALG00000007592	-	68	37.854	Ficedula_albicollis
ENSSDUG00000010922	-	70	42.708	ENSFHEG00000018000	ncl	77	37.381	Fundulus_heteroclitus
ENSSDUG00000010922	-	72	41.519	ENSGMOG00000001341	ncl	70	38.696	Gadus_morhua
ENSSDUG00000010922	-	70	41.624	ENSGALG00000032930	NCL	71	37.378	Gallus_gallus
ENSSDUG00000010922	-	70	41.406	ENSGAFG00000015375	ncl	60	39.309	Gambusia_affinis
ENSSDUG00000010922	-	70	42.670	ENSGACG00000008970	ncl	69	39.648	Gasterosteus_aculeatus
ENSSDUG00000010922	-	71	40.898	ENSGAGG00000013330	-	59	40.380	Gopherus_agassizii
ENSSDUG00000010922	-	70	44.357	ENSHBUG00000006869	ncl	66	40.756	Haplochromis_burtoni
ENSSDUG00000010922	-	70	42.857	ENSHCOG00000010234	ncl	73	36.347	Hippocampus_comes
ENSSDUG00000010922	-	59	42.812	ENSIPUG00000024556	ncl	89	42.308	Ictalurus_punctatus
ENSSDUG00000010922	-	70	43.229	ENSKMAG00000008111	ncl	72	40.657	Kryptolebias_marmoratus
ENSSDUG00000010922	-	93	60.816	ENSLBEG00000007915	-	94	60.606	Labrus_bergylta
ENSSDUG00000010922	-	81	43.490	ENSLBEG00000019073	ncl	60	43.511	Labrus_bergylta
ENSSDUG00000010922	-	75	63.397	ENSLBEG00000014278	-	85	66.230	Labrus_bergylta
ENSSDUG00000010922	-	71	41.414	ENSLACG00000022167	-	84	41.063	Latimeria_chalumnae
ENSSDUG00000010922	-	72	43.257	ENSLACG00000009328	ncl	69	40.042	Latimeria_chalumnae
ENSSDUG00000010922	-	68	42.513	ENSLOCG00000004828	ncl	68	39.238	Lepisosteus_oculatus
ENSSDUG00000010922	-	70	44.648	ENSMAMG00000002086	ncl	54	40.693	Mastacembelus_armatus
ENSSDUG00000010922	-	93	63.780	ENSMAMG00000003479	-	87	63.783	Mastacembelus_armatus
ENSSDUG00000010922	-	70	44.357	ENSMZEG00005017438	ncl	65	40.851	Maylandia_zebra
ENSSDUG00000010922	-	68	41.053	ENSMGAG00000008147	-	90	45.276	Meleagris_gallopavo
ENSSDUG00000010922	-	59	43.302	ENSMMOG00000008553	ncl	84	43.636	Mola_mola
ENSSDUG00000010922	-	82	40.561	ENSMODG00000002470	-	70	36.614	Monodelphis_domestica
ENSSDUG00000010922	-	73	42.818	ENSMALG00000014827	ncl	60	39.723	Monopterus_albus
ENSSDUG00000010922	-	59	30.938	ENSMPUG00000001663	-	57	30.938	Mustela_putorius_furo
ENSSDUG00000010922	-	50	46.125	ENSNBRG00000000146	-	87	44.554	Neolamprologus_brichardi
ENSSDUG00000010922	-	50	46.125	ENSNBRG00000001232	ncl	83	44.702	Neolamprologus_brichardi
ENSSDUG00000010922	-	82	39.848	ENSMEUG00000012335	-	69	36.714	Notamacropus_eugenii
ENSSDUG00000010922	-	70	44.357	ENSONIG00000012508	ncl	65	41.053	Oreochromis_niloticus
ENSSDUG00000010922	-	72	53.634	ENSONIG00000010631	-	98	54.293	Oreochromis_niloticus
ENSSDUG00000010922	-	66	41.713	ENSOANG00000008732	-	59	42.408	Ornithorhynchus_anatinus
ENSSDUG00000010922	-	68	43.164	ENSORLG00000007055	ncl	62	39.915	Oryzias_latipes
ENSSDUG00000010922	-	74	50.990	ENSORLG00000004645	-	85	52.806	Oryzias_latipes
ENSSDUG00000010922	-	70	42.708	ENSORLG00020017943	ncl	62	40.127	Oryzias_latipes_hni
ENSSDUG00000010922	-	74	50.495	ENSORLG00020003497	-	83	47.758	Oryzias_latipes_hni
ENSSDUG00000010922	-	70	42.078	ENSORLG00015013815	ncl	90	42.353	Oryzias_latipes_hsok
ENSSDUG00000010922	-	74	53.465	ENSORLG00015006613	-	79	53.827	Oryzias_latipes_hsok
ENSSDUG00000010922	-	70	42.448	ENSOMEG00000020786	ncl	68	38.041	Oryzias_melastigma
ENSSDUG00000010922	-	75	52.463	ENSOMEG00000015864	-	84	53.077	Oryzias_melastigma
ENSSDUG00000010922	-	70	44.675	ENSPKIG00000002604	ncl	69	42.438	Paramormyrops_kingsleyae
ENSSDUG00000010922	-	72	40.295	ENSPSIG00000002361	-	56	40.426	Pelodiscus_sinensis
ENSSDUG00000010922	-	70	40.992	ENSPMGG00000004709	ncl	92	39.946	Periophthalmus_magnuspinnatus
ENSSDUG00000010922	-	82	40.561	ENSPCIG00000003293	-	62	40.389	Phascolarctos_cinereus
ENSSDUG00000010922	-	70	41.558	ENSPFOG00000024205	ncl	60	39.216	Poecilia_formosa
ENSSDUG00000010922	-	70	41.299	ENSPLAG00000024026	ncl	61	39.270	Poecilia_latipinna
ENSSDUG00000010922	-	70	41.558	ENSPMEG00000006000	ncl	66	37.452	Poecilia_mexicana
ENSSDUG00000010922	-	70	44.357	ENSPNYG00000020494	ncl	66	40.552	Pundamilia_nyererei
ENSSDUG00000010922	-	70	44.156	ENSPNAG00000006192	ncl	62	41.379	Pygocentrus_nattereri
ENSSDUG00000010922	-	82	36.923	ENSSHAG00000002702	-	65	36.881	Sarcophilus_harrisii
ENSSDUG00000010922	-	87	44.125	ENSSFOG00015008583	ncl	72	41.788	Scleropages_formosus
ENSSDUG00000010922	-	58	35.220	ENSSFOG00015013153	-	76	35.220	Scleropages_formosus
ENSSDUG00000010922	-	70	44.156	ENSSMAG00000021241	ncl	61	43.890	Scophthalmus_maximus
ENSSDUG00000010922	-	92	65.344	ENSSMAG00000007582	-	93	67.024	Scophthalmus_maximus
ENSSDUG00000010922	-	100	94.932	ENSSLDG00000015784	-	100	94.932	Seriola_lalandi_dorsalis
ENSSDUG00000010922	-	70	43.896	ENSSLDG00000002012	ncl	61	41.048	Seriola_lalandi_dorsalis
ENSSDUG00000010922	-	73	39.691	ENSSPUG00000008244	-	76	36.893	Sphenodon_punctatus
ENSSDUG00000010922	-	66	46.350	ENSSPAG00000002637	ncl	80	45.424	Stegastes_partitus
ENSSDUG00000010922	-	99	60.649	ENSSPAG00000001859	-	90	60.934	Stegastes_partitus
ENSSDUG00000010922	-	70	41.131	ENSTGUG00000009782	-	76	38.367	Taeniopygia_guttata
ENSSDUG00000010922	-	79	42.933	ENSTRUG00000008185	ncl	68	40.084	Takifugu_rubripes
ENSSDUG00000010922	-	68	43.767	ENSTNIG00000012186	ncl	64	42.963	Tetraodon_nigroviridis
ENSSDUG00000010922	-	72	42.092	ENSXETG00000009517	ncl	56	43.521	Xenopus_tropicalis
ENSSDUG00000010922	-	77	35.938	ENSXCOG00000003524	ncl	92	36.342	Xiphophorus_couchianus
ENSSDUG00000010922	-	76	53.828	ENSXCOG00000007369	-	92	55.250	Xiphophorus_couchianus
ENSSDUG00000010922	-	70	42.448	ENSXMAG00000005914	ncl	64	39.157	Xiphophorus_maculatus