EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000010955 (Gene tree)
Gene ID: 111228557
Gene Symbol: blm
Alias: -
Full Name: BLM RecQ like helicase
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 8323 bases
Position: chrBDQW01000219.1:1675514-1683836
Accession: 111228557
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000014998	HRDC	PF00570.23	1.9e-14	1	1
ENSSDUP00000014998	BDHCT	PF08072.11	1.1e-18	1	1
ENSSDUP00000014998	DEAD	PF00270.29	4.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000015282	-	4753	XM_022754523	ENSSDUP00000014998	1392 (aa)	XP_022610244	-

Gene Model

Click here to download ENSSDUG00000010955's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03440	Homologous recombination	KEGG
sdu03460	Fanconi anemia pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000010955's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000010955	blm	56	66.158	ENSG00000197299	BLM	50	74.590	Homo_sapiens
ENSSDUG00000010955	blm	100	76.571	ENSAPOG00000017966	blm	100	76.571	Acanthochromis_polyacanthus
ENSSDUG00000010955	blm	56	64.885	ENSAMEG00000013843	BLM	55	64.885	Ailuropoda_melanoleuca
ENSSDUG00000010955	blm	100	75.174	ENSACIG00000023762	blm	100	74.547	Amphilophus_citrinellus
ENSSDUG00000010955	blm	100	77.445	ENSAOCG00000003318	blm	100	76.660	Amphiprion_ocellaris
ENSSDUG00000010955	blm	100	75.681	ENSAPEG00000018105	blm	100	74.843	Amphiprion_percula
ENSSDUG00000010955	blm	99	80.401	ENSATEG00000006421	blm	100	80.329	Anabas_testudineus
ENSSDUG00000010955	blm	80	52.312	ENSAPLG00000006878	BLM	72	61.476	Anas_platyrhynchos
ENSSDUG00000010955	blm	87	51.852	ENSANAG00000038415	BLM	87	51.852	Aotus_nancymaae
ENSSDUG00000010955	blm	100	74.825	ENSACLG00000020354	blm	100	74.685	Astatotilapia_calliptera
ENSSDUG00000010955	blm	99	57.270	ENSAMXG00000016970	blm	99	57.495	Astyanax_mexicanus
ENSSDUG00000010955	blm	58	60.821	ENSBTAG00000020301	BLM	54	60.821	Bos_taurus
ENSSDUG00000010955	blm	99	46.081	ENSCJAG00000009803	BLM	83	50.609	Callithrix_jacchus
ENSSDUG00000010955	blm	56	65.184	ENSCAFG00000012385	BLM	55	64.885	Canis_familiaris
ENSSDUG00000010955	blm	56	65.184	ENSCAFG00020016111	BLM	89	67.028	Canis_lupus_dingo
ENSSDUG00000010955	blm	51	72.619	ENSCHIG00000010329	BLM	54	72.619	Capra_hircus
ENSSDUG00000010955	blm	56	66.033	ENSTSYG00000012368	BLM	51	73.361	Carlito_syrichta
ENSSDUG00000010955	blm	53	70.403	ENSCAPG00000017976	BLM	60	70.403	Cavia_aperea
ENSSDUG00000010955	blm	79	51.471	ENSCPOG00000001761	BLM	59	62.574	Cavia_porcellus
ENSSDUG00000010955	blm	84	50.697	ENSCCAG00000023069	BLM	83	51.025	Cebus_capucinus
ENSSDUG00000010955	blm	84	50.040	ENSCATG00000040609	BLM	75	77.705	Cercocebus_atys
ENSSDUG00000010955	blm	87	63.723	ENSCLAG00000012111	BLM	59	63.723	Chinchilla_lanigera
ENSSDUG00000010955	blm	84	49.757	ENSCSAG00000017040	BLM	55	65.820	Chlorocebus_sabaeus
ENSSDUG00000010955	blm	73	54.620	ENSCHOG00000006255	BLM	50	60.185	Choloepus_hoffmanni
ENSSDUG00000010955	blm	91	49.702	ENSCPBG00000025000	BLM	72	68.501	Chrysemys_picta_bellii
ENSSDUG00000010955	blm	76	54.931	ENSCGRG00001024897	Blm	59	63.002	Cricetulus_griseus_chok1gshd
ENSSDUG00000010955	blm	95	71.333	ENSCSEG00000013483	blm	99	70.886	Cynoglossus_semilaevis
ENSSDUG00000010955	blm	76	71.784	ENSCVAG00000017583	blm	97	69.608	Cyprinodon_variegatus
ENSSDUG00000010955	blm	99	58.402	ENSDARG00000077089	blm	100	58.690	Danio_rerio
ENSSDUG00000010955	blm	60	64.758	ENSDNOG00000010159	BLM	58	64.810	Dasypus_novemcinctus
ENSSDUG00000010955	blm	51	51.852	ENSETEG00000015019	BLM	50	51.852	Echinops_telfairi
ENSSDUG00000010955	blm	71	44.971	ENSEASG00005006727	BLM	53	57.587	Equus_asinus_asinus
ENSSDUG00000010955	blm	80	52.735	ENSECAG00000011405	BLM	59	63.626	Equus_caballus
ENSSDUG00000010955	blm	83	62.033	ENSEEUG00000001434	BLM	61	61.593	Erinaceus_europaeus
ENSSDUG00000010955	blm	99	60.404	ENSELUG00000019098	blm	99	59.506	Esox_lucius
ENSSDUG00000010955	blm	84	65.820	ENSFCAG00000006087	BLM	82	73.975	Felis_catus
ENSSDUG00000010955	blm	79	52.780	ENSFALG00000010981	BLM	67	62.816	Ficedula_albicollis
ENSSDUG00000010955	blm	53	68.224	ENSFDAG00000012658	BLM	55	68.224	Fukomys_damarensis
ENSSDUG00000010955	blm	100	71.378	ENSFHEG00000002553	blm	100	71.306	Fundulus_heteroclitus
ENSSDUG00000010955	blm	99	59.231	ENSGMOG00000016431	blm	98	70.000	Gadus_morhua
ENSSDUG00000010955	blm	99	46.091	ENSGALG00000008256	BLM	84	64.444	Gallus_gallus
ENSSDUG00000010955	blm	96	77.027	ENSGAFG00000001117	blm	100	77.027	Gambusia_affinis
ENSSDUG00000010955	blm	99	71.379	ENSGACG00000010863	blm	100	89.205	Gasterosteus_aculeatus
ENSSDUG00000010955	blm	63	56.366	ENSGAGG00000005383	BLM	76	66.374	Gopherus_agassizii
ENSSDUG00000010955	blm	100	77.000	ENSHBUG00000015943	blm	100	76.857	Haplochromis_burtoni
ENSSDUG00000010955	blm	56	64.861	ENSHGLG00000013231	BLM	54	64.861	Heterocephalus_glaber_female
ENSSDUG00000010955	blm	75	70.409	ENSHCOG00000011455	blm	100	74.636	Hippocampus_comes
ENSSDUG00000010955	blm	76	68.818	ENSIPUG00000000529	blm	76	71.801	Ictalurus_punctatus
ENSSDUG00000010955	blm	63	65.693	ENSSTOG00000005000	BLM	65	65.779	Ictidomys_tridecemlineatus
ENSSDUG00000010955	blm	67	56.515	ENSJJAG00000016322	Blm	94	54.572	Jaculus_jaculus
ENSSDUG00000010955	blm	100	74.679	ENSKMAG00000016608	blm	100	73.966	Kryptolebias_marmoratus
ENSSDUG00000010955	blm	60	83.914	ENSLBEG00000018729	blm	96	83.942	Labrus_bergylta
ENSSDUG00000010955	blm	99	54.358	ENSLOCG00000014302	blm	100	54.311	Lepisosteus_oculatus
ENSSDUG00000010955	blm	76	53.727	ENSMFAG00000042982	BLM	75	77.377	Macaca_fascicularis
ENSSDUG00000010955	blm	78	52.632	ENSMMUG00000019526	BLM	75	77.377	Macaca_mulatta
ENSSDUG00000010955	blm	78	52.632	ENSMNEG00000031251	BLM	75	77.377	Macaca_nemestrina
ENSSDUG00000010955	blm	84	47.385	ENSMLEG00000032934	BLM	54	62.214	Mandrillus_leucophaeus
ENSSDUG00000010955	blm	99	77.468	ENSMAMG00000008726	blm	99	77.468	Mastacembelus_armatus
ENSSDUG00000010955	blm	100	73.305	ENSMZEG00005022323	blm	100	73.655	Maylandia_zebra
ENSSDUG00000010955	blm	66	63.766	ENSMAUG00000008953	Blm	67	63.452	Mesocricetus_auratus
ENSSDUG00000010955	blm	83	51.570	ENSMICG00000034442	BLM	50	73.770	Microcebus_murinus
ENSSDUG00000010955	blm	89	64.855	ENSMOCG00000016367	Blm	69	64.493	Microtus_ochrogaster
ENSSDUG00000010955	blm	100	76.017	ENSMMOG00000006959	blm	100	76.017	Mola_mola
ENSSDUG00000010955	blm	100	79.516	ENSMALG00000007323	blm	100	79.516	Monopterus_albus
ENSSDUG00000010955	blm	59	61.967	MGP_CAROLIEiJ_G0029907	Blm	59	62.204	Mus_caroli
ENSSDUG00000010955	blm	59	63.195	ENSMUSG00000030528	Blm	58	63.033	Mus_musculus
ENSSDUG00000010955	blm	59	63.033	MGP_PahariEiJ_G0013129	Blm	58	63.397	Mus_pahari
ENSSDUG00000010955	blm	87	62.884	MGP_SPRETEiJ_G0031009	Blm	88	63.290	Mus_spretus
ENSSDUG00000010955	blm	59	63.560	ENSNGAG00000001275	Blm	59	63.353	Nannospalax_galili
ENSSDUG00000010955	blm	100	73.806	ENSNBRG00000019702	blm	100	74.157	Neolamprologus_brichardi
ENSSDUG00000010955	blm	75	50.323	ENSNLEG00000012087	BLM	74	61.597	Nomascus_leucogenys
ENSSDUG00000010955	blm	52	65.068	ENSOPRG00000011667	BLM	51	65.890	Ochotona_princeps
ENSSDUG00000010955	blm	75	51.215	ENSODEG00000015373	BLM	99	51.117	Octodon_degus
ENSSDUG00000010955	blm	100	72.025	ENSONIG00000015193	blm	100	71.429	Oreochromis_niloticus
ENSSDUG00000010955	blm	55	65.217	ENSOANG00000009316	-	100	65.212	Ornithorhynchus_anatinus
ENSSDUG00000010955	blm	56	64.796	ENSOCUG00000013969	BLM	79	51.186	Oryctolagus_cuniculus
ENSSDUG00000010955	blm	100	72.831	ENSORLG00000008110	blm	100	72.546	Oryzias_latipes
ENSSDUG00000010955	blm	100	72.546	ENSORLG00020004812	blm	100	71.711	Oryzias_latipes_hni
ENSSDUG00000010955	blm	100	72.831	ENSORLG00015018640	blm	100	75.214	Oryzias_latipes_hsok
ENSSDUG00000010955	blm	100	72.163	ENSOMEG00000023545	blm	100	72.163	Oryzias_melastigma
ENSSDUG00000010955	blm	64	64.168	ENSOGAG00000005708	BLM	64	63.488	Otolemur_garnettii
ENSSDUG00000010955	blm	99	46.304	ENSOARG00000012875	BLM	60	61.512	Ovis_aries
ENSSDUG00000010955	blm	84	65.820	ENSPPRG00000002471	BLM	82	73.770	Panthera_pardus
ENSSDUG00000010955	blm	84	65.057	ENSPTIG00000016168	BLM	82	73.116	Panthera_tigris_altaica
ENSSDUG00000010955	blm	84	49.879	ENSPANG00000018572	BLM	75	77.377	Papio_anubis
ENSSDUG00000010955	blm	89	73.027	ENSPKIG00000008954	blm	88	72.556	Paramormyrops_kingsleyae
ENSSDUG00000010955	blm	71	70.737	ENSPMGG00000006629	blm	100	70.867	Periophthalmus_magnuspinnatus
ENSSDUG00000010955	blm	66	63.227	ENSPEMG00000017348	Blm	69	63.227	Peromyscus_maniculatus_bairdii
ENSSDUG00000010955	blm	80	51.632	ENSPCIG00000006609	BLM	58	62.920	Phascolarctos_cinereus
ENSSDUG00000010955	blm	100	70.421	ENSPFOG00000005059	blm	100	70.919	Poecilia_formosa
ENSSDUG00000010955	blm	100	69.993	ENSPLAG00000017344	blm	100	70.421	Poecilia_latipinna
ENSSDUG00000010955	blm	100	70.421	ENSPMEG00000000321	blm	100	70.919	Poecilia_mexicana
ENSSDUG00000010955	blm	100	69.729	ENSPREG00000007715	blm	100	70.442	Poecilia_reticulata
ENSSDUG00000010955	blm	63	65.013	ENSPPYG00000006784	BLM	68	64.930	Pongo_abelii
ENSSDUG00000010955	blm	59	61.283	ENSPCAG00000008960	BLM	59	61.456	Procavia_capensis
ENSSDUG00000010955	blm	83	45.754	ENSPCOG00000000439	BLM	65	57.795	Propithecus_coquereli
ENSSDUG00000010955	blm	73	76.721	ENSPVAG00000011642	BLM	63	76.721	Pteropus_vampyrus
ENSSDUG00000010955	blm	91	85.639	ENSPNYG00000010956	blm	95	84.939	Pundamilia_nyererei
ENSSDUG00000010955	blm	100	59.185	ENSPNAG00000011714	blm	100	58.950	Pygocentrus_nattereri
ENSSDUG00000010955	blm	99	45.030	ENSRBIG00000029656	BLM	75	77.049	Rhinopithecus_bieti
ENSSDUG00000010955	blm	74	49.893	ENSSBOG00000030957	BLM	86	50.943	Saimiri_boliviensis_boliviensis
ENSSDUG00000010955	blm	80	52.977	ENSSHAG00000007988	BLM	81	53.012	Sarcophilus_harrisii
ENSSDUG00000010955	blm	66	72.248	ENSSFOG00015015462	blm	74	71.934	Scleropages_formosus
ENSSDUG00000010955	blm	100	80.500	ENSSMAG00000001120	blm	100	80.500	Scophthalmus_maximus
ENSSDUG00000010955	blm	100	96.983	ENSSLDG00000000634	blm	100	96.983	Seriola_lalandi_dorsalis
ENSSDUG00000010955	blm	59	60.560	ENSSARG00000006398	BLM	62	60.560	Sorex_araneus
ENSSDUG00000010955	blm	80	50.823	ENSSPUG00000000013	BLM	97	50.565	Sphenodon_punctatus
ENSSDUG00000010955	blm	99	76.804	ENSSPAG00000013999	blm	99	76.804	Stegastes_partitus
ENSSDUG00000010955	blm	62	65.940	ENSSSCG00000001816	BLM	62	66.074	Sus_scrofa
ENSSDUG00000010955	blm	99	71.183	ENSTRUG00000019860	blm	99	71.183	Takifugu_rubripes
ENSSDUG00000010955	blm	99	66.063	ENSTNIG00000019246	blm	99	65.366	Tetraodon_nigroviridis
ENSSDUG00000010955	blm	99	45.102	ENSTTRG00000016386	BLM	55	66.201	Tursiops_truncatus
ENSSDUG00000010955	blm	66	64.885	ENSUMAG00000009105	BLM	94	68.392	Ursus_maritimus
ENSSDUG00000010955	blm	67	62.705	ENSVPAG00000000085	BLM	67	62.183	Vicugna_pacos
ENSSDUG00000010955	blm	80	64.393	ENSVVUG00000006402	BLM	83	64.071	Vulpes_vulpes
ENSSDUG00000010955	blm	100	66.853	ENSXCOG00000020227	blm	100	67.760	Xiphophorus_couchianus
ENSSDUG00000010955	blm	100	70.655	ENSXMAG00000002951	blm	100	71.154	Xiphophorus_maculatus