EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000011109 (Gene tree)
Gene ID: 111223813
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 7387 bases
Position: chrBDQW01000116.1:1387405-1394791
Accession: 111223813
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000015203	RRM_1	PF00076.22	3.9e-30	1	2
ENSSDUP00000015203	RRM_1	PF00076.22	3.9e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000015488	-	2377	XM_022748093	ENSSDUP00000015203	340 (aa)	XP_022603814	UPI000BBEF12E

Gene Model

Click here to download ENSSDUG00000011109's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000011109's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000011109	trnau1apb	60	30.047	ENSSDUG00000003453	-	68	31.034
ENSSDUG00000011109	trnau1apb	79	30.409	ENSSDUG00000018021	tial1	64	30.409
ENSSDUG00000011109	trnau1apb	95	44.242	ENSSDUG00000011734	trnau1apa	93	42.284

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000011109	trnau1apb	99	77.581	ENSAPOG00000010086	trnau1apb	99	79.351	Acanthochromis_polyacanthus
ENSSDUG00000011109	trnau1apb	99	84.661	ENSACIG00000001863	trnau1apb	99	82.059	Amphilophus_citrinellus
ENSSDUG00000011109	trnau1apb	99	93.805	ENSAOCG00000011891	trnau1apb	99	93.805	Amphiprion_ocellaris
ENSSDUG00000011109	trnau1apb	99	85.546	ENSAPEG00000008029	trnau1apb	99	92.920	Amphiprion_percula
ENSSDUG00000011109	trnau1apb	99	93.805	ENSATEG00000002196	trnau1apb	99	93.805	Anabas_testudineus
ENSSDUG00000011109	trnau1apb	99	84.795	ENSACLG00000003016	trnau1apb	99	82.216	Astatotilapia_calliptera
ENSSDUG00000011109	trnau1apb	99	64.307	ENSAMXG00000001805	trnau1apb	99	65.089	Astyanax_mexicanus
ENSSDUG00000011109	trnau1apb	100	88.270	ENSCSEG00000018215	trnau1apb	99	85.924	Cynoglossus_semilaevis
ENSSDUG00000011109	trnau1apb	95	80.547	ENSCVAG00000017866	trnau1apb	99	81.155	Cyprinodon_variegatus
ENSSDUG00000011109	trnau1apb	99	64.793	ENSDARG00000056475	trnau1apb	98	65.385	Danio_rerio
ENSSDUG00000011109	trnau1apb	99	64.223	ENSELUG00000016683	trnau1apb	99	65.103	Esox_lucius
ENSSDUG00000011109	trnau1apb	99	84.638	ENSFHEG00000001267	trnau1apb	99	84.638	Fundulus_heteroclitus
ENSSDUG00000011109	trnau1apb	99	71.955	ENSGMOG00000001160	trnau1apb	99	75.882	Gadus_morhua
ENSSDUG00000011109	trnau1apb	52	94.915	ENSGAFG00000006770	trnau1apb	99	73.607	Gambusia_affinis
ENSSDUG00000011109	trnau1apb	99	82.301	ENSGACG00000014944	trnau1apb	99	83.186	Gasterosteus_aculeatus
ENSSDUG00000011109	trnau1apb	71	39.592	ENSGAGG00000022384	-	78	39.184	Gopherus_agassizii
ENSSDUG00000011109	trnau1apb	99	92.330	ENSHBUG00000018944	trnau1apb	99	90.855	Haplochromis_burtoni
ENSSDUG00000011109	trnau1apb	68	83.478	ENSHCOG00000011350	trnau1apb	78	80.000	Hippocampus_comes
ENSSDUG00000011109	trnau1apb	99	64.244	ENSIPUG00000008843	tsp1l	99	65.976	Ictalurus_punctatus
ENSSDUG00000011109	trnau1apb	64	90.868	ENSKMAG00000010082	trnau1apb	99	84.795	Kryptolebias_marmoratus
ENSSDUG00000011109	trnau1apb	99	89.971	ENSLBEG00000020480	trnau1apb	99	89.971	Labrus_bergylta
ENSSDUG00000011109	trnau1apb	99	52.616	ENSLOCG00000013175	trnau1apb	99	51.884	Lepisosteus_oculatus
ENSSDUG00000011109	trnau1apb	99	94.395	ENSMAMG00000012192	trnau1apb	99	93.215	Mastacembelus_armatus
ENSSDUG00000011109	trnau1apb	99	92.330	ENSMZEG00005014852	trnau1apb	99	90.855	Maylandia_zebra
ENSSDUG00000011109	trnau1apb	71	38.934	ENSMGAG00000003234	-	98	38.367	Meleagris_gallopavo
ENSSDUG00000011109	trnau1apb	97	79.710	ENSMMOG00000021521	trnau1apb	100	78.261	Mola_mola
ENSSDUG00000011109	trnau1apb	99	75.740	ENSMALG00000003772	trnau1apb	99	76.036	Monopterus_albus
ENSSDUG00000011109	trnau1apb	97	84.985	ENSNBRG00000000751	trnau1apb	99	82.335	Neolamprologus_brichardi
ENSSDUG00000011109	trnau1apb	99	79.762	ENSONIG00000016639	trnau1apb	99	76.855	Oreochromis_niloticus
ENSSDUG00000011109	trnau1apb	99	75.219	ENSORLG00000013265	trnau1apb	99	84.840	Oryzias_latipes
ENSSDUG00000011109	trnau1apb	99	85.630	ENSORLG00020004464	trnau1apb	99	85.630	Oryzias_latipes_hni
ENSSDUG00000011109	trnau1apb	99	85.630	ENSORLG00015021098	trnau1apb	99	85.630	Oryzias_latipes_hsok
ENSSDUG00000011109	trnau1apb	99	77.843	ENSOMEG00000016531	trnau1apb	99	86.880	Oryzias_melastigma
ENSSDUG00000011109	trnau1apb	99	58.651	ENSPKIG00000007995	trnau1apb	99	58.263	Paramormyrops_kingsleyae
ENSSDUG00000011109	trnau1apb	71	41.224	ENSPSIG00000004189	-	78	38.710	Pelodiscus_sinensis
ENSSDUG00000011109	trnau1apb	99	62.722	ENSPMGG00000018509	trnau1apb	88	82.160	Periophthalmus_magnuspinnatus
ENSSDUG00000011109	trnau1apb	99	81.844	ENSPFOG00000003938	trnau1apb	99	83.478	Poecilia_formosa
ENSSDUG00000011109	trnau1apb	99	81.844	ENSPLAG00000015480	trnau1apb	99	83.478	Poecilia_latipinna
ENSSDUG00000011109	trnau1apb	99	81.844	ENSPMEG00000012743	trnau1apb	99	83.478	Poecilia_mexicana
ENSSDUG00000011109	trnau1apb	99	80.980	ENSPREG00000015035	trnau1apb	99	82.609	Poecilia_reticulata
ENSSDUG00000011109	trnau1apb	99	82.164	ENSPNYG00000012127	trnau1apb	99	79.592	Pundamilia_nyererei
ENSSDUG00000011109	trnau1apb	99	65.689	ENSPNAG00000019138	trnau1apb	98	66.864	Pygocentrus_nattereri
ENSSDUG00000011109	trnau1apb	99	60.116	ENSSFOG00015014158	trnau1apb	99	62.353	Scleropages_formosus
ENSSDUG00000011109	trnau1apb	100	90.588	ENSSMAG00000001745	trnau1apb	100	90.588	Scophthalmus_maximus
ENSSDUG00000011109	trnau1apb	100	99.412	ENSSLDG00000012947	trnau1apb	100	99.412	Seriola_lalandi_dorsalis
ENSSDUG00000011109	trnau1apb	71	34.884	ENSSPUG00000016701	-	82	35.743	Sphenodon_punctatus
ENSSDUG00000011109	trnau1apb	99	94.690	ENSSPAG00000006917	trnau1apb	99	94.690	Stegastes_partitus
ENSSDUG00000011109	trnau1apb	99	81.818	ENSTRUG00000008608	trnau1apb	99	80.925	Takifugu_rubripes
ENSSDUG00000011109	trnau1apb	99	69.345	ENSTNIG00000000916	trnau1apb	99	67.262	Tetraodon_nigroviridis
ENSSDUG00000011109	trnau1apb	94	73.780	ENSXCOG00000007974	trnau1apb	94	74.847	Xiphophorus_couchianus
ENSSDUG00000011109	trnau1apb	99	82.133	ENSXMAG00000029918	trnau1apb	99	83.768	Xiphophorus_maculatus