EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000011303 (Gene tree)
Gene ID: 111232243
Gene Symbol: -
Alias: sfrs1a|sfrs1l|wu:fb52g10|wu:fb97g12|zgc:66146
Full Name: serine/arginine-rich splicing factor 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 3219 bases
Position: chrBDQW01000330.1:1053094-1056312
Accession: 111232243
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000015516	RRM_1	PF00076.22	2.4e-32	1	2
ENSSDUP00000015516	RRM_1	PF00076.22	2.4e-32	2	2
ENSSDUP00000015493	RRM_1	PF00076.22	3e-32	1	2
ENSSDUP00000015493	RRM_1	PF00076.22	3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000015802	-	696	-	ENSSDUP00000015516	231 (aa)	-	-
ENSSDUT00000015780	-	1343	XM_022759681	ENSSDUP00000015493	245 (aa)	XP_022615402	UPI00054BFE09

Gene Model

Click here to download ENSSDUG00000011303's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG
sdu05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000011303's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000011303	-	99	75.641	ENSSDUG00000003929	-	83	79.798
ENSSDUG00000011303	-	77	70.718	ENSSDUG00000018908	srsf9	73	70.166
ENSSDUG00000011303	-	68	43.646	ENSSDUG00000005766	srsf5b	59	47.399
ENSSDUG00000011303	-	83	84.135	ENSSDUG00000003887	-	79	84.135
ENSSDUG00000011303	-	71	41.714	ENSSDUG00000006103	srsf5a	59	42.286

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000011303	-	98	84.362	ENSG00000136450	SRSF1	95	91.935	Homo_sapiens
ENSSDUG00000011303	-	83	87.958	ENSAPOG00000008542	-	80	87.437	Acanthochromis_polyacanthus
ENSSDUG00000011303	-	100	98.776	ENSAPOG00000002748	-	100	98.776	Acanthochromis_polyacanthus
ENSSDUG00000011303	-	83	87.958	ENSAMEG00000002635	SRSF1	77	88.482	Ailuropoda_melanoleuca
ENSSDUG00000011303	-	100	98.701	ENSACIG00000008091	srsf1a	100	98.701	Amphilophus_citrinellus
ENSSDUG00000011303	-	83	87.437	ENSAOCG00000000337	-	80	87.437	Amphiprion_ocellaris
ENSSDUG00000011303	-	100	99.184	ENSAOCG00000010671	-	100	99.184	Amphiprion_ocellaris
ENSSDUG00000011303	-	83	87.437	ENSAPEG00000023352	-	79	87.437	Amphiprion_percula
ENSSDUG00000011303	-	100	99.184	ENSAPEG00000009915	-	100	99.184	Amphiprion_percula
ENSSDUG00000011303	-	100	98.381	ENSATEG00000022403	-	100	98.381	Anabas_testudineus
ENSSDUG00000011303	-	86	85.859	ENSATEG00000021567	-	92	83.333	Anabas_testudineus
ENSSDUG00000011303	-	83	90.155	ENSACAG00000005542	-	78	92.228	Anolis_carolinensis
ENSSDUG00000011303	-	84	66.495	ENSANAG00000025417	-	73	67.016	Aotus_nancymaae
ENSSDUG00000011303	-	98	84.362	ENSANAG00000020583	-	93	91.176	Aotus_nancymaae
ENSSDUG00000011303	-	57	74.839	ENSAMXG00000024373	-	72	78.710	Astyanax_mexicanus
ENSSDUG00000011303	-	95	81.590	ENSAMXG00000035996	srsf1a	79	89.899	Astyanax_mexicanus
ENSSDUG00000011303	-	98	84.362	ENSBTAG00000014766	SRSF1	88	85.650	Bos_taurus
ENSSDUG00000011303	-	98	84.362	ENSCJAG00000041713	-	93	91.176	Callithrix_jacchus
ENSSDUG00000011303	-	83	81.865	ENSCJAG00000008111	-	86	82.902	Callithrix_jacchus
ENSSDUG00000011303	-	98	84.362	ENSCAFG00000017430	SRSF1	88	85.650	Canis_familiaris
ENSSDUG00000011303	-	98	84.362	ENSCAFG00020025632	-	88	85.650	Canis_lupus_dingo
ENSSDUG00000011303	-	83	89.119	ENSCHIG00000010787	SRSF1	78	91.192	Capra_hircus
ENSSDUG00000011303	-	98	84.362	ENSTSYG00000013899	-	93	91.176	Carlito_syrichta
ENSSDUG00000011303	-	98	84.362	ENSCPOG00000032681	-	88	85.650	Cavia_porcellus
ENSSDUG00000011303	-	98	84.362	ENSCCAG00000029484	-	93	91.176	Cebus_capucinus
ENSSDUG00000011303	-	98	84.362	ENSCATG00000042294	-	93	91.176	Cercocebus_atys
ENSSDUG00000011303	-	98	84.362	ENSCLAG00000014707	-	88	85.650	Chinchilla_lanigera
ENSSDUG00000011303	-	99	83.197	ENSCSAG00000005642	-	88	84.753	Chlorocebus_sabaeus
ENSSDUG00000011303	-	83	89.119	ENSCHOG00000001899	SRSF1	78	91.192	Choloepus_hoffmanni
ENSSDUG00000011303	-	98	85.597	ENSCPBG00000009851	-	88	86.996	Chrysemys_picta_bellii
ENSSDUG00000011303	-	98	84.362	ENSCANG00000029726	-	93	91.176	Colobus_angolensis_palliatus
ENSSDUG00000011303	-	98	84.362	ENSCGRG00001000670	Srsf1	88	85.650	Cricetulus_griseus_chok1gshd
ENSSDUG00000011303	-	98	84.362	ENSCGRG00000005590	Srsf1	88	85.650	Cricetulus_griseus_crigri
ENSSDUG00000011303	-	82	81.250	ENSCSEG00000009973	-	79	81.250	Cynoglossus_semilaevis
ENSSDUG00000011303	-	100	97.200	ENSCSEG00000014272	-	100	97.200	Cynoglossus_semilaevis
ENSSDUG00000011303	-	82	87.113	ENSCVAG00000005458	-	90	86.813	Cyprinodon_variegatus
ENSSDUG00000011303	-	100	98.776	ENSCVAG00000018617	-	100	98.776	Cyprinodon_variegatus
ENSSDUG00000011303	-	83	85.714	ENSDARG00000057691	srsf1a	99	86.911	Danio_rerio
ENSSDUG00000011303	-	83	91.192	ENSDARG00000017843	srsf1b	79	93.264	Danio_rerio
ENSSDUG00000011303	-	98	84.362	ENSDNOG00000011737	-	88	85.650	Dasypus_novemcinctus
ENSSDUG00000011303	-	98	84.362	ENSDORG00000015082	Srsf1	88	85.650	Dipodomys_ordii
ENSSDUG00000011303	-	77	88.889	ENSETEG00000005349	-	62	90.000	Echinops_telfairi
ENSSDUG00000011303	-	98	84.362	ENSEASG00005002922	-	88	85.650	Equus_asinus_asinus
ENSSDUG00000011303	-	83	89.119	ENSECAG00000016654	SRSF1	78	91.192	Equus_caballus
ENSSDUG00000011303	-	77	90.000	ENSEEUG00000009255	-	62	91.111	Erinaceus_europaeus
ENSSDUG00000011303	-	99	94.378	ENSELUG00000021646	srsf1a	99	94.378	Esox_lucius
ENSSDUG00000011303	-	98	84.362	ENSFCAG00000002250	-	90	90.608	Felis_catus
ENSSDUG00000011303	-	78	94.340	ENSFALG00000005062	-	93	67.797	Ficedula_albicollis
ENSSDUG00000011303	-	98	84.362	ENSFDAG00000010646	-	88	85.650	Fukomys_damarensis
ENSSDUG00000011303	-	100	98.367	ENSFHEG00000003174	srsf1a	100	98.367	Fundulus_heteroclitus
ENSSDUG00000011303	-	85	89.796	ENSGMOG00000014787	-	80	89.005	Gadus_morhua
ENSSDUG00000011303	-	83	90.674	ENSGALG00000005525	SRSF1	78	92.746	Gallus_gallus
ENSSDUG00000011303	-	83	85.864	ENSGACG00000020621	srsf1b	78	85.340	Gasterosteus_aculeatus
ENSSDUG00000011303	-	98	85.597	ENSGAGG00000022965	-	88	86.996	Gopherus_agassizii
ENSSDUG00000011303	-	98	84.362	ENSGGOG00000004386	SRSF1	93	91.176	Gorilla_gorilla
ENSSDUG00000011303	-	100	98.776	ENSHBUG00000016788	srsf1a	100	98.776	Haplochromis_burtoni
ENSSDUG00000011303	-	70	88.415	ENSHGLG00000000600	-	76	90.854	Heterocephalus_glaber_female
ENSSDUG00000011303	-	70	88.415	ENSHGLG00000000669	-	76	90.854	Heterocephalus_glaber_female
ENSSDUG00000011303	-	98	84.362	ENSHGLG00100016906	-	88	85.650	Heterocephalus_glaber_male
ENSSDUG00000011303	-	84	89.447	ENSHCOG00000018918	srsf1a	88	85.714	Hippocampus_comes
ENSSDUG00000011303	-	84	87.562	ENSIPUG00000017039	srsf1a	80	89.552	Ictalurus_punctatus
ENSSDUG00000011303	-	83	90.625	ENSIPUG00000008750	srsf1b	78	93.229	Ictalurus_punctatus
ENSSDUG00000011303	-	98	84.362	ENSSTOG00000000243	-	91	90.608	Ictidomys_tridecemlineatus
ENSSDUG00000011303	-	98	84.362	ENSJJAG00000000102	-	88	85.650	Jaculus_jaculus
ENSSDUG00000011303	-	52	82.787	ENSJJAG00000014464	-	92	86.179	Jaculus_jaculus
ENSSDUG00000011303	-	100	97.561	ENSKMAG00000019232	srsf1a	100	97.561	Kryptolebias_marmoratus
ENSSDUG00000011303	-	100	100.000	ENSLBEG00000020864	-	100	100.000	Labrus_bergylta
ENSSDUG00000011303	-	83	81.122	ENSLBEG00000015294	-	79	82.653	Labrus_bergylta
ENSSDUG00000011303	-	83	91.146	ENSLACG00000014160	srsf1a	72	91.146	Latimeria_chalumnae
ENSSDUG00000011303	-	83	90.104	ENSLOCG00000005994	srsf1a	78	93.229	Lepisosteus_oculatus
ENSSDUG00000011303	-	83	89.119	ENSLAFG00000025743	SRSF1	78	91.192	Loxodonta_africana
ENSSDUG00000011303	-	98	84.362	ENSMFAG00000040003	-	93	91.176	Macaca_fascicularis
ENSSDUG00000011303	-	98	84.362	ENSMMUG00000004725	SRSF1	93	91.176	Macaca_mulatta
ENSSDUG00000011303	-	99	81.148	ENSMMUG00000003260	-	93	88.542	Macaca_mulatta
ENSSDUG00000011303	-	99	81.557	ENSMNEG00000015983	-	88	83.408	Macaca_nemestrina
ENSSDUG00000011303	-	98	84.362	ENSMNEG00000027680	-	93	91.176	Macaca_nemestrina
ENSSDUG00000011303	-	83	89.119	ENSMLEG00000040509	SRSF1	78	91.192	Mandrillus_leucophaeus
ENSSDUG00000011303	-	99	81.818	ENSMLEG00000015243	-	88	81.448	Mandrillus_leucophaeus
ENSSDUG00000011303	-	83	91.146	ENSMAMG00000019691	-	80	90.625	Mastacembelus_armatus
ENSSDUG00000011303	-	100	99.184	ENSMAMG00000018454	-	100	99.184	Mastacembelus_armatus
ENSSDUG00000011303	-	83	89.005	ENSMAMG00000019687	-	91	84.753	Mastacembelus_armatus
ENSSDUG00000011303	-	98	84.362	ENSMAUG00000021845	Srsf1	88	85.650	Mesocricetus_auratus
ENSSDUG00000011303	-	98	84.362	ENSMICG00000013639	-	93	91.176	Microcebus_murinus
ENSSDUG00000011303	-	98	84.362	ENSMOCG00000001996	Srsf1	88	85.650	Microtus_ochrogaster
ENSSDUG00000011303	-	100	99.567	ENSMMOG00000014354	srsf1a	100	99.567	Mola_mola
ENSSDUG00000011303	-	77	89.503	ENSMODG00000014781	-	62	90.055	Monodelphis_domestica
ENSSDUG00000011303	-	86	77.778	ENSMALG00000007763	-	77	81.675	Monopterus_albus
ENSSDUG00000011303	-	84	98.446	ENSMALG00000017129	-	76	98.446	Monopterus_albus
ENSSDUG00000011303	-	98	84.362	MGP_CAROLIEiJ_G0016943	Srsf1	90	90.608	Mus_caroli
ENSSDUG00000011303	-	98	84.362	ENSMUSG00000018379	Srsf1	90	90.608	Mus_musculus
ENSSDUG00000011303	-	98	84.362	MGP_PahariEiJ_G0018074	Srsf1	88	85.650	Mus_pahari
ENSSDUG00000011303	-	98	84.362	MGP_SPRETEiJ_G0017790	Srsf1	90	90.608	Mus_spretus
ENSSDUG00000011303	-	83	89.119	ENSMPUG00000015369	SRSF1	78	91.192	Mustela_putorius_furo
ENSSDUG00000011303	-	83	89.119	ENSMLUG00000011040	SRSF1	78	91.192	Myotis_lucifugus
ENSSDUG00000011303	-	85	87.310	ENSMLUG00000023995	-	77	86.911	Myotis_lucifugus
ENSSDUG00000011303	-	83	89.119	ENSNGAG00000011395	Srsf1	78	91.192	Nannospalax_galili
ENSSDUG00000011303	-	99	74.590	ENSNBRG00000008041	srsf1b	78	77.487	Neolamprologus_brichardi
ENSSDUG00000011303	-	98	84.362	ENSNLEG00000008088	-	93	91.176	Nomascus_leucogenys
ENSSDUG00000011303	-	52	86.179	ENSMEUG00000002783	-	98	86.290	Notamacropus_eugenii
ENSSDUG00000011303	-	56	87.121	ENSOPRG00000001234	-	72	90.152	Ochotona_princeps
ENSSDUG00000011303	-	98	84.362	ENSODEG00000011481	-	88	85.650	Octodon_degus
ENSSDUG00000011303	-	84	91.282	ENSONIG00000004860	-	79	90.625	Oreochromis_niloticus
ENSSDUG00000011303	-	100	98.776	ENSONIG00000013160	-	99	98.776	Oreochromis_niloticus
ENSSDUG00000011303	-	99	63.821	ENSOCUG00000010894	-	75	72.487	Oryctolagus_cuniculus
ENSSDUG00000011303	-	100	99.184	ENSORLG00000004580	srsf1a	100	99.184	Oryzias_latipes
ENSSDUG00000011303	-	100	99.184	ENSORLG00020009456	srsf1a	100	99.184	Oryzias_latipes_hni
ENSSDUG00000011303	-	100	99.134	ENSORLG00015014384	srsf1a	100	99.134	Oryzias_latipes_hsok
ENSSDUG00000011303	-	92	97.345	ENSOMEG00000004106	srsf1a	93	97.345	Oryzias_melastigma
ENSSDUG00000011303	-	87	89.706	ENSOGAG00000025950	-	78	91.192	Otolemur_garnettii
ENSSDUG00000011303	-	83	87.958	ENSOARG00000008323	SRSF1	77	87.958	Ovis_aries
ENSSDUG00000011303	-	98	84.362	ENSPPAG00000043403	-	93	91.176	Pan_paniscus
ENSSDUG00000011303	-	98	84.362	ENSPPRG00000004238	-	90	90.608	Panthera_pardus
ENSSDUG00000011303	-	98	84.362	ENSPTRG00000049077	SRSF1	93	91.176	Pan_troglodytes
ENSSDUG00000011303	-	98	84.362	ENSPANG00000022305	-	93	91.176	Papio_anubis
ENSSDUG00000011303	-	99	66.939	ENSPANG00000030275	-	89	64.000	Papio_anubis
ENSSDUG00000011303	-	83	90.104	ENSPKIG00000012857	srsf1b	78	93.229	Paramormyrops_kingsleyae
ENSSDUG00000011303	-	83	92.188	ENSPKIG00000007204	srsf1a	83	92.188	Paramormyrops_kingsleyae
ENSSDUG00000011303	-	83	83.420	ENSPSIG00000009000	-	72	92.481	Pelodiscus_sinensis
ENSSDUG00000011303	-	96	82.203	ENSPMGG00000005467	-	97	76.891	Periophthalmus_magnuspinnatus
ENSSDUG00000011303	-	100	96.429	ENSPMGG00000013112	-	100	96.429	Periophthalmus_magnuspinnatus
ENSSDUG00000011303	-	98	84.362	ENSPEMG00000021416	Srsf1	88	85.650	Peromyscus_maniculatus_bairdii
ENSSDUG00000011303	-	83	89.175	ENSPCIG00000006076	-	78	91.237	Phascolarctos_cinereus
ENSSDUG00000011303	-	84	87.310	ENSPFOG00000018325	-	69	87.565	Poecilia_formosa
ENSSDUG00000011303	-	84	87.310	ENSPLAG00000008416	srsf1b	78	87.565	Poecilia_latipinna
ENSSDUG00000011303	-	53	98.374	ENSPMEG00000020607	-	99	98.374	Poecilia_mexicana
ENSSDUG00000011303	-	53	98.374	ENSPMEG00000014312	-	99	98.374	Poecilia_mexicana
ENSSDUG00000011303	-	84	87.310	ENSPMEG00000002388	-	78	87.565	Poecilia_mexicana
ENSSDUG00000011303	-	100	98.776	ENSPREG00000009667	srsf1a	100	98.776	Poecilia_reticulata
ENSSDUG00000011303	-	98	84.362	ENSPPYG00000008240	SRSF1	88	85.650	Pongo_abelii
ENSSDUG00000011303	-	83	89.119	ENSPCAG00000005199	SRSF1	78	91.192	Procavia_capensis
ENSSDUG00000011303	-	84	71.717	ENSPCOG00000025736	-	93	72.251	Propithecus_coquereli
ENSSDUG00000011303	-	98	84.362	ENSPCOG00000023654	-	93	91.176	Propithecus_coquereli
ENSSDUG00000011303	-	57	95.714	ENSPVAG00000000519	-	53	95.714	Pteropus_vampyrus
ENSSDUG00000011303	-	83	92.670	ENSPNAG00000014601	srsf1b	78	92.670	Pygocentrus_nattereri
ENSSDUG00000011303	-	95	84.914	ENSPNAG00000022241	srsf1a	78	92.147	Pygocentrus_nattereri
ENSSDUG00000011303	-	83	89.119	ENSRNOG00000050323	Srsf1	78	91.192	Rattus_norvegicus
ENSSDUG00000011303	-	98	84.362	ENSRBIG00000034445	-	93	91.176	Rhinopithecus_bieti
ENSSDUG00000011303	-	98	84.362	ENSRROG00000041506	-	93	91.176	Rhinopithecus_roxellana
ENSSDUG00000011303	-	98	84.362	ENSSBOG00000025377	-	93	91.176	Saimiri_boliviensis_boliviensis
ENSSDUG00000011303	-	83	89.175	ENSSHAG00000002552	-	78	91.237	Sarcophilus_harrisii
ENSSDUG00000011303	-	83	93.194	ENSSFOG00015004800	srsf1a	77	93.194	Scleropages_formosus
ENSSDUG00000011303	-	83	85.000	ENSSMAG00000009719	-	78	85.000	Scophthalmus_maximus
ENSSDUG00000011303	-	100	98.776	ENSSMAG00000007018	-	100	98.776	Scophthalmus_maximus
ENSSDUG00000011303	-	98	70.614	ENSSLDG00000016895	-	77	83.696	Seriola_lalandi_dorsalis
ENSSDUG00000011303	-	100	100.000	ENSSLDG00000010543	-	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000011303	-	83	78.646	ENSSLDG00000016868	-	89	75.676	Seriola_lalandi_dorsalis
ENSSDUG00000011303	-	77	90.000	ENSSARG00000010949	-	62	91.111	Sorex_araneus
ENSSDUG00000011303	-	98	85.597	ENSSPUG00000000804	-	91	92.265	Sphenodon_punctatus
ENSSDUG00000011303	-	100	98.780	ENSSPAG00000022562	-	100	98.780	Stegastes_partitus
ENSSDUG00000011303	-	83	83.981	ENSSPAG00000014152	-	80	83.981	Stegastes_partitus
ENSSDUG00000011303	-	98	84.362	ENSSSCG00000017626	-	88	85.650	Sus_scrofa
ENSSDUG00000011303	-	57	89.474	ENSTGUG00000008416	-	72	92.481	Taeniopygia_guttata
ENSSDUG00000011303	-	100	98.776	ENSTRUG00000003691	srsf1a	100	98.776	Takifugu_rubripes
ENSSDUG00000011303	-	100	98.776	ENSTNIG00000016223	srsf1a	99	98.776	Tetraodon_nigroviridis
ENSSDUG00000011303	-	77	87.222	ENSTBEG00000015378	-	62	90.000	Tupaia_belangeri
ENSSDUG00000011303	-	56	87.121	ENSTTRG00000007310	SRSF1	72	90.152	Tursiops_truncatus
ENSSDUG00000011303	-	83	89.119	ENSUAMG00000009858	SRSF1	78	91.192	Ursus_americanus
ENSSDUG00000011303	-	98	84.362	ENSUMAG00000000455	-	88	85.650	Ursus_maritimus
ENSSDUG00000011303	-	83	88.601	ENSVPAG00000010094	SRSF1	78	90.674	Vicugna_pacos
ENSSDUG00000011303	-	98	84.362	ENSVVUG00000011882	-	88	85.650	Vulpes_vulpes
ENSSDUG00000011303	-	83	92.147	ENSXETG00000008954	srsf1	79	84.434	Xenopus_tropicalis
ENSSDUG00000011303	-	100	98.776	ENSXMAG00000011766	srsf1a	100	98.776	Xiphophorus_maculatus