EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000011424 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 9450 bases
Position: chrBDQW01000226.1:2859010-2868459
Accession: 111228913
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000015707	ResIII	PF04851.15	4.2e-10	1	1
ENSSDUP00000015707	DEAD	PF00270.29	1.6e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000015995	-	2574	XM_022755024	ENSSDUP00000015707	858 (aa)	XP_022610745	-

Gene Model

Click here to download ENSSDUG00000011424's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000011424's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000011424	hfm1	82	31.509	ENSSDUG00000021410	snrnp200	64	31.509
ENSSDUG00000011424	hfm1	77	32.278	ENSSDUG00000010897	ascc3	59	32.278

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000011424	hfm1	100	64.527	ENSG00000162669	HFM1	64	64.527	Homo_sapiens
ENSSDUG00000011424	hfm1	100	88.618	ENSAPOG00000005304	hfm1	100	88.618	Acanthochromis_polyacanthus
ENSSDUG00000011424	hfm1	93	66.303	ENSAMEG00000000432	HFM1	57	66.303	Ailuropoda_melanoleuca
ENSSDUG00000011424	hfm1	93	84.318	ENSACIG00000021553	hfm1	77	84.318	Amphilophus_citrinellus
ENSSDUG00000011424	hfm1	100	89.872	ENSAOCG00000022839	hfm1	100	89.872	Amphiprion_ocellaris
ENSSDUG00000011424	hfm1	100	89.535	ENSAPEG00000014316	hfm1	100	89.535	Amphiprion_percula
ENSSDUG00000011424	hfm1	93	88.554	ENSATEG00000019181	hfm1	68	88.357	Anabas_testudineus
ENSSDUG00000011424	hfm1	93	66.345	ENSAPLG00000013639	HFM1	58	66.345	Anas_platyrhynchos
ENSSDUG00000011424	hfm1	100	63.668	ENSANAG00000029513	HFM1	65	63.668	Aotus_nancymaae
ENSSDUG00000011424	hfm1	99	81.818	ENSACLG00000009033	hfm1	100	81.818	Astatotilapia_calliptera
ENSSDUG00000011424	hfm1	99	75.666	ENSAMXG00000006108	hfm1	61	75.666	Astyanax_mexicanus
ENSSDUG00000011424	hfm1	99	63.401	ENSBTAG00000020856	HFM1	61	63.401	Bos_taurus
ENSSDUG00000011424	hfm1	100	63.977	ENSCJAG00000001843	HFM1	64	63.977	Callithrix_jacchus
ENSSDUG00000011424	hfm1	93	66.223	ENSCAFG00000020187	HFM1	57	66.223	Canis_familiaris
ENSSDUG00000011424	hfm1	99	66.063	ENSTSYG00000014250	HFM1	62	66.063	Carlito_syrichta
ENSSDUG00000011424	hfm1	93	65.375	ENSCPOG00000007421	HFM1	59	65.375	Cavia_porcellus
ENSSDUG00000011424	hfm1	96	63.743	ENSCCAG00000033206	HFM1	60	63.743	Cebus_capucinus
ENSSDUG00000011424	hfm1	100	65.659	ENSCATG00000030987	HFM1	62	65.659	Cercocebus_atys
ENSSDUG00000011424	hfm1	93	66.296	ENSCLAG00000005173	HFM1	55	66.296	Chinchilla_lanigera
ENSSDUG00000011424	hfm1	78	51.261	ENSCSAVG00000005094	-	100	51.261	Ciona_savignyi
ENSSDUG00000011424	hfm1	90	62.594	ENSCGRG00001016995	Hfm1	57	62.594	Cricetulus_griseus_chok1gshd
ENSSDUG00000011424	hfm1	93	64.649	ENSCGRG00000017181	Hfm1	58	64.649	Cricetulus_griseus_crigri
ENSSDUG00000011424	hfm1	93	82.909	ENSCSEG00000017659	hfm1	76	82.909	Cynoglossus_semilaevis
ENSSDUG00000011424	hfm1	80	82.254	ENSCVAG00000005075	hfm1	86	82.254	Cyprinodon_variegatus
ENSSDUG00000011424	hfm1	99	74.568	ENSDARG00000104288	hfm1	80	74.568	Danio_rerio
ENSSDUG00000011424	hfm1	92	65.450	ENSDNOG00000004776	HFM1	55	65.450	Dasypus_novemcinctus
ENSSDUG00000011424	hfm1	93	63.679	ENSDORG00000014661	Hfm1	58	63.679	Dipodomys_ordii
ENSSDUG00000011424	hfm1	90	66.292	ENSEASG00005015424	HFM1	80	66.292	Equus_asinus_asinus
ENSSDUG00000011424	hfm1	93	66.385	ENSECAG00000024039	HFM1	56	66.385	Equus_caballus
ENSSDUG00000011424	hfm1	100	80.233	ENSELUG00000018944	hfm1	98	80.233	Esox_lucius
ENSSDUG00000011424	hfm1	93	66.264	ENSFCAG00000029116	HFM1	57	66.264	Felis_catus
ENSSDUG00000011424	hfm1	93	66.787	ENSFALG00000001781	HFM1	58	66.787	Ficedula_albicollis
ENSSDUG00000011424	hfm1	96	64.527	ENSFDAG00000020816	HFM1	58	64.527	Fukomys_damarensis
ENSSDUG00000011424	hfm1	93	74.788	ENSGMOG00000017436	hfm1	86	74.788	Gadus_morhua
ENSSDUG00000011424	hfm1	99	82.715	ENSGAFG00000018093	hfm1	100	82.715	Gambusia_affinis
ENSSDUG00000011424	hfm1	93	81.675	ENSGACG00000015686	hfm1	85	81.675	Gasterosteus_aculeatus
ENSSDUG00000011424	hfm1	100	64.411	ENSGGOG00000038524	HFM1	64	64.411	Gorilla_gorilla
ENSSDUG00000011424	hfm1	93	83.515	ENSHBUG00000007309	hfm1	79	83.515	Haplochromis_burtoni
ENSSDUG00000011424	hfm1	99	79.741	ENSHCOG00000019632	hfm1	100	79.741	Hippocampus_comes
ENSSDUG00000011424	hfm1	99	73.993	ENSIPUG00000017020	hfm1	98	73.993	Ictalurus_punctatus
ENSSDUG00000011424	hfm1	96	63.244	ENSJJAG00000017198	Hfm1	61	63.244	Jaculus_jaculus
ENSSDUG00000011424	hfm1	93	83.353	ENSKMAG00000002282	hfm1	85	83.353	Kryptolebias_marmoratus
ENSSDUG00000011424	hfm1	100	84.517	ENSLBEG00000006759	hfm1	99	84.517	Labrus_bergylta
ENSSDUG00000011424	hfm1	93	68.389	ENSLACG00000010698	HFM1	79	68.510	Latimeria_chalumnae
ENSSDUG00000011424	hfm1	93	73.188	ENSLOCG00000004931	hfm1	76	73.188	Lepisosteus_oculatus
ENSSDUG00000011424	hfm1	75	67.463	ENSLAFG00000015903	-	90	67.463	Loxodonta_africana
ENSSDUG00000011424	hfm1	100	63.152	ENSMFAG00000003649	HFM1	62	63.152	Macaca_fascicularis
ENSSDUG00000011424	hfm1	100	65.659	ENSMMUG00000006819	HFM1	62	65.659	Macaca_mulatta
ENSSDUG00000011424	hfm1	99	85.930	ENSMAMG00000004623	hfm1	100	85.930	Mastacembelus_armatus
ENSSDUG00000011424	hfm1	99	81.818	ENSMZEG00005004679	hfm1	100	81.818	Maylandia_zebra
ENSSDUG00000011424	hfm1	86	65.274	ENSMGAG00000008437	HFM1	95	65.274	Meleagris_gallopavo
ENSSDUG00000011424	hfm1	93	65.012	ENSMAUG00000018858	Hfm1	57	65.012	Mesocricetus_auratus
ENSSDUG00000011424	hfm1	96	63.986	ENSMICG00000037935	HFM1	60	63.986	Microcebus_murinus
ENSSDUG00000011424	hfm1	93	65.860	ENSMOCG00000014812	Hfm1	58	65.860	Microtus_ochrogaster
ENSSDUG00000011424	hfm1	100	88.310	ENSMMOG00000006148	hfm1	99	88.310	Mola_mola
ENSSDUG00000011424	hfm1	100	90.000	ENSMALG00000002401	hfm1	100	90.000	Monopterus_albus
ENSSDUG00000011424	hfm1	84	71.186	MGP_CAROLIEiJ_G0027496	Hfm1	53	71.186	Mus_caroli
ENSSDUG00000011424	hfm1	93	65.496	ENSMUSG00000043410	Hfm1	58	65.496	Mus_musculus
ENSSDUG00000011424	hfm1	96	64.019	MGP_PahariEiJ_G0017268	Hfm1	60	64.019	Mus_pahari
ENSSDUG00000011424	hfm1	93	66.102	MGP_SPRETEiJ_G0028495	Hfm1	58	66.102	Mus_spretus
ENSSDUG00000011424	hfm1	93	66.505	ENSMPUG00000004594	HFM1	56	66.505	Mustela_putorius_furo
ENSSDUG00000011424	hfm1	93	66.022	ENSMLUG00000010200	HFM1	57	66.022	Myotis_lucifugus
ENSSDUG00000011424	hfm1	99	81.935	ENSNBRG00000002910	hfm1	100	81.935	Neolamprologus_brichardi
ENSSDUG00000011424	hfm1	100	62.850	ENSNLEG00000010285	HFM1	64	62.850	Nomascus_leucogenys
ENSSDUG00000011424	hfm1	85	64.516	ENSMEUG00000015788	HFM1	53	64.516	Notamacropus_eugenii
ENSSDUG00000011424	hfm1	93	61.185	ENSOPRG00000013916	HFM1	58	61.185	Ochotona_princeps
ENSSDUG00000011424	hfm1	93	84.606	ENSONIG00000010590	hfm1	79	84.606	Oreochromis_niloticus
ENSSDUG00000011424	hfm1	91	83.822	ENSORLG00000026844	hfm1	99	83.822	Oryzias_latipes
ENSSDUG00000011424	hfm1	100	71.567	ENSORLG00020002951	hfm1	70	71.567	Oryzias_latipes_hni
ENSSDUG00000011424	hfm1	100	77.560	ENSOMEG00000016474	hfm1	63	77.560	Oryzias_melastigma
ENSSDUG00000011424	hfm1	93	65.700	ENSOGAG00000032369	HFM1	67	65.700	Otolemur_garnettii
ENSSDUG00000011424	hfm1	93	66.626	ENSOARG00000015812	HFM1	58	66.626	Ovis_aries
ENSSDUG00000011424	hfm1	100	64.761	ENSPPAG00000024582	HFM1	70	64.761	Pan_paniscus
ENSSDUG00000011424	hfm1	93	66.264	ENSPPRG00000003270	HFM1	57	66.264	Panthera_pardus
ENSSDUG00000011424	hfm1	93	66.264	ENSPTIG00000018881	HFM1	57	66.264	Panthera_tigris_altaica
ENSSDUG00000011424	hfm1	100	66.264	ENSPTRG00000000948	HFM1	62	66.264	Pan_troglodytes
ENSSDUG00000011424	hfm1	100	65.659	ENSPANG00000009838	HFM1	62	65.659	Papio_anubis
ENSSDUG00000011424	hfm1	98	71.495	ENSPKIG00000003810	hfm1	99	71.495	Paramormyrops_kingsleyae
ENSSDUG00000011424	hfm1	93	81.727	ENSPMGG00000011059	hfm1	100	81.727	Periophthalmus_magnuspinnatus
ENSSDUG00000011424	hfm1	93	65.617	ENSPEMG00000022852	Hfm1	57	65.617	Peromyscus_maniculatus_bairdii
ENSSDUG00000011424	hfm1	93	66.143	ENSPCIG00000014233	HFM1	56	66.143	Phascolarctos_cinereus
ENSSDUG00000011424	hfm1	93	82.424	ENSPFOG00000017194	hfm1	79	82.424	Poecilia_formosa
ENSSDUG00000011424	hfm1	93	82.303	ENSPLAG00000000571	hfm1	76	81.699	Poecilia_latipinna
ENSSDUG00000011424	hfm1	94	81.818	ENSPMEG00000019475	hfm1	77	81.818	Poecilia_mexicana
ENSSDUG00000011424	hfm1	99	82.326	ENSPREG00000007803	hfm1	100	82.326	Poecilia_reticulata
ENSSDUG00000011424	hfm1	100	65.202	ENSPPYG00000001163	HFM1	59	65.202	Pongo_abelii
ENSSDUG00000011424	hfm1	96	59.393	ENSPVAG00000009713	HFM1	61	59.393	Pteropus_vampyrus
ENSSDUG00000011424	hfm1	99	81.607	ENSPNYG00000001795	hfm1	100	81.607	Pundamilia_nyererei
ENSSDUG00000011424	hfm1	100	76.933	ENSPNAG00000010865	hfm1	88	76.933	Pygocentrus_nattereri
ENSSDUG00000011424	hfm1	96	63.785	ENSRNOG00000023299	Hfm1	60	63.785	Rattus_norvegicus
ENSSDUG00000011424	hfm1	100	64.846	ENSRROG00000045569	HFM1	63	64.846	Rhinopithecus_roxellana
ENSSDUG00000011424	hfm1	96	64.094	ENSSBOG00000027456	HFM1	61	64.094	Saimiri_boliviensis_boliviensis
ENSSDUG00000011424	hfm1	66	66.892	ENSSHAG00000014616	-	67	66.892	Sarcophilus_harrisii
ENSSDUG00000011424	hfm1	99	74.818	ENSSFOG00015020129	hfm1	59	74.818	Scleropages_formosus
ENSSDUG00000011424	hfm1	93	88.434	ENSSMAG00000006907	hfm1	85	85.189	Scophthalmus_maximus
ENSSDUG00000011424	hfm1	100	97.589	ENSSLDG00000016386	hfm1	100	97.589	Seriola_lalandi_dorsalis
ENSSDUG00000011424	hfm1	100	88.941	ENSSPAG00000001023	hfm1	100	88.941	Stegastes_partitus
ENSSDUG00000011424	hfm1	93	66.989	ENSSSCG00000006912	HFM1	60	66.989	Sus_scrofa
ENSSDUG00000011424	hfm1	93	66.505	ENSTGUG00000006172	HFM1	86	66.505	Taeniopygia_guttata
ENSSDUG00000011424	hfm1	53	82.505	ENSTNIG00000006962	hfm1	95	82.505	Tetraodon_nigroviridis
ENSSDUG00000011424	hfm1	93	66.264	ENSTTRG00000013933	HFM1	58	66.264	Tursiops_truncatus
ENSSDUG00000011424	hfm1	93	63.845	ENSVPAG00000011331	HFM1	57	63.845	Vicugna_pacos
ENSSDUG00000011424	hfm1	91	65.675	ENSVVUG00000020760	HFM1	81	65.675	Vulpes_vulpes
ENSSDUG00000011424	hfm1	99	81.954	ENSXMAG00000004178	hfm1	100	81.954	Xiphophorus_maculatus