EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000011453 (Gene tree)
Gene ID: 111227176
Gene Symbol: RNPS1
Alias: wu:fa19a11|zgc:65775
Full Name: RNA-binding protein with serine-rich domain 1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 4072 bases
Position: chrBDQW01000169.1:3311215-3315286
Accession: 111227176
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000015692	RRM_1	PF00076.22	5.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000015981	RNPS1-201	2158	XM_022752597	ENSSDUP00000015692	280 (aa)	XP_022608318	UPI000BBED005

Gene Model

Click here to download ENSSDUG00000011453's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000011453's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000011453	RNPS1	84	71.369	ENSG00000205937	RNPS1	85	70.833	Homo_sapiens
ENSSDUG00000011453	RNPS1	83	83.117	ENSAPOG00000017310	RNPS1	74	81.304	Acanthochromis_polyacanthus
ENSSDUG00000011453	RNPS1	84	71.250	ENSAMEG00000017861	RNPS1	78	70.711	Ailuropoda_melanoleuca
ENSSDUG00000011453	RNPS1	77	73.023	ENSACIG00000014367	-	77	71.163	Amphilophus_citrinellus
ENSSDUG00000011453	RNPS1	83	92.641	ENSAOCG00000002404	RNPS1	83	92.641	Amphiprion_ocellaris
ENSSDUG00000011453	RNPS1	82	92.609	ENSAPEG00000006497	RNPS1	80	92.609	Amphiprion_percula
ENSSDUG00000011453	RNPS1	83	94.372	ENSATEG00000024267	RNPS1	83	94.372	Anabas_testudineus
ENSSDUG00000011453	RNPS1	84	70.954	ENSANAG00000028802	RNPS1	85	70.417	Aotus_nancymaae
ENSSDUG00000011453	RNPS1	83	81.385	ENSACLG00000025942	RNPS1	82	79.654	Astatotilapia_calliptera
ENSSDUG00000011453	RNPS1	83	73.077	ENSAMXG00000006330	-	81	66.995	Astyanax_mexicanus
ENSSDUG00000011453	RNPS1	85	71.311	ENSBTAG00000009969	RNPS1	86	70.782	Bos_taurus
ENSSDUG00000011453	RNPS1	84	71.369	ENSCJAG00000014969	RNPS1	90	67.907	Callithrix_jacchus
ENSSDUG00000011453	RNPS1	84	71.250	ENSCAFG00000019397	RNPS1	78	70.711	Canis_familiaris
ENSSDUG00000011453	RNPS1	84	71.250	ENSCAFG00020026159	RNPS1	86	69.802	Canis_lupus_dingo
ENSSDUG00000011453	RNPS1	75	67.907	ENSTSYG00000031848	-	87	67.907	Carlito_syrichta
ENSSDUG00000011453	RNPS1	84	71.369	ENSTSYG00000001629	RNPS1	85	70.833	Carlito_syrichta
ENSSDUG00000011453	RNPS1	84	71.250	ENSCAPG00000007731	RNPS1	78	70.711	Cavia_aperea
ENSSDUG00000011453	RNPS1	84	71.369	ENSCPOG00000002066	RNPS1	85	70.833	Cavia_porcellus
ENSSDUG00000011453	RNPS1	84	70.954	ENSCCAG00000034480	RNPS1	85	70.417	Cebus_capucinus
ENSSDUG00000011453	RNPS1	93	67.045	ENSCATG00000042361	-	80	67.782	Cercocebus_atys
ENSSDUG00000011453	RNPS1	84	71.369	ENSCATG00000013756	RNPS1	85	70.833	Cercocebus_atys
ENSSDUG00000011453	RNPS1	84	71.369	ENSCLAG00000015546	RNPS1	85	70.833	Chinchilla_lanigera
ENSSDUG00000011453	RNPS1	97	74.275	ENSCSAG00000005219	-	81	69.583	Chlorocebus_sabaeus
ENSSDUG00000011453	RNPS1	84	71.967	ENSCHOG00000004866	RNPS1	78	71.429	Choloepus_hoffmanni
ENSSDUG00000011453	RNPS1	56	56.122	ENSCING00000016317	-	82	56.731	Ciona_intestinalis
ENSSDUG00000011453	RNPS1	84	71.369	ENSCANG00000041307	RNPS1	85	70.833	Colobus_angolensis_palliatus
ENSSDUG00000011453	RNPS1	84	71.369	ENSCGRG00001020431	Rnps1	85	70.833	Cricetulus_griseus_chok1gshd
ENSSDUG00000011453	RNPS1	76	70.968	ENSCGRG00000014021	Rnps1	77	70.370	Cricetulus_griseus_crigri
ENSSDUG00000011453	RNPS1	82	66.810	ENSCSEG00000000402	RNPS1	76	64.103	Cynoglossus_semilaevis
ENSSDUG00000011453	RNPS1	82	90.435	ENSCSEG00000015997	RNPS1	80	90.435	Cynoglossus_semilaevis
ENSSDUG00000011453	RNPS1	77	82.870	ENSCVAG00000010868	RNPS1	77	80.093	Cyprinodon_variegatus
ENSSDUG00000011453	RNPS1	83	75.641	ENSDARG00000116743	rnps1	83	75.641	Danio_rerio
ENSSDUG00000011453	RNPS1	83	75.641	ENSDARG00000100188	RNPS1	83	75.641	Danio_rerio
ENSSDUG00000011453	RNPS1	84	71.250	ENSDNOG00000016081	RNPS1	78	70.711	Dasypus_novemcinctus
ENSSDUG00000011453	RNPS1	70	52.284	ENSDNOG00000038751	-	99	51.759	Dasypus_novemcinctus
ENSSDUG00000011453	RNPS1	84	70.954	ENSDORG00000001755	Rnps1	85	70.417	Dipodomys_ordii
ENSSDUG00000011453	RNPS1	84	71.250	ENSEASG00005004862	RNPS1	78	70.711	Equus_asinus_asinus
ENSSDUG00000011453	RNPS1	84	71.784	ENSFCAG00000007690	RNPS1	85	71.250	Felis_catus
ENSSDUG00000011453	RNPS1	84	72.500	ENSFALG00000004868	RNPS1	84	71.967	Ficedula_albicollis
ENSSDUG00000011453	RNPS1	84	70.954	ENSFDAG00000003386	RNPS1	85	70.417	Fukomys_damarensis
ENSSDUG00000011453	RNPS1	77	92.130	ENSFHEG00000011705	RNPS1	77	92.130	Fundulus_heteroclitus
ENSSDUG00000011453	RNPS1	84	72.614	ENSGALG00000009288	RNPS1	85	72.083	Gallus_gallus
ENSSDUG00000011453	RNPS1	77	82.870	ENSGAFG00000005457	RNPS1	77	80.093	Gambusia_affinis
ENSSDUG00000011453	RNPS1	83	80.603	ENSGACG00000011261	RNPS1	83	93.534	Gasterosteus_aculeatus
ENSSDUG00000011453	RNPS1	84	71.250	ENSGAGG00000010452	RNPS1	78	70.711	Gopherus_agassizii
ENSSDUG00000011453	RNPS1	84	71.369	ENSGGOG00000014275	RNPS1	85	70.833	Gorilla_gorilla
ENSSDUG00000011453	RNPS1	73	68.750	ENSGGOG00000026421	-	79	68.750	Gorilla_gorilla
ENSSDUG00000011453	RNPS1	82	63.043	ENSHBUG00000017337	-	82	65.517	Haplochromis_burtoni
ENSSDUG00000011453	RNPS1	83	80.952	ENSHBUG00000002494	RNPS1	82	79.221	Haplochromis_burtoni
ENSSDUG00000011453	RNPS1	84	71.369	ENSHGLG00000013957	RNPS1	85	70.833	Heterocephalus_glaber_female
ENSSDUG00000011453	RNPS1	79	68.889	ENSHGLG00000006292	-	87	70.507	Heterocephalus_glaber_female
ENSSDUG00000011453	RNPS1	84	71.369	ENSHGLG00100003539	RNPS1	85	70.833	Heterocephalus_glaber_male
ENSSDUG00000011453	RNPS1	83	76.793	ENSHCOG00000004424	RNPS1	83	83.122	Hippocampus_comes
ENSSDUG00000011453	RNPS1	84	59.244	ENSSTOG00000013200	RNPS1	50	78.400	Ictidomys_tridecemlineatus
ENSSDUG00000011453	RNPS1	84	71.369	ENSJJAG00000015576	-	85	70.833	Jaculus_jaculus
ENSSDUG00000011453	RNPS1	83	80.519	ENSKMAG00000009135	RNPS1	82	77.922	Kryptolebias_marmoratus
ENSSDUG00000011453	RNPS1	84	71.369	ENSMFAG00000042142	RNPS1	85	70.833	Macaca_fascicularis
ENSSDUG00000011453	RNPS1	71	70.098	ENSMMUG00000019238	-	79	70.098	Macaca_mulatta
ENSSDUG00000011453	RNPS1	86	69.796	ENSMMUG00000041726	-	84	67.782	Macaca_mulatta
ENSSDUG00000011453	RNPS1	86	70.204	ENSMNEG00000024827	-	84	68.201	Macaca_nemestrina
ENSSDUG00000011453	RNPS1	84	71.369	ENSMLEG00000036928	RNPS1	85	70.833	Mandrillus_leucophaeus
ENSSDUG00000011453	RNPS1	73	69.231	ENSMLEG00000040232	-	81	67.150	Mandrillus_leucophaeus
ENSSDUG00000011453	RNPS1	83	96.537	ENSMAMG00000021609	-	83	96.537	Mastacembelus_armatus
ENSSDUG00000011453	RNPS1	82	77.586	ENSMAMG00000021148	-	81	68.534	Mastacembelus_armatus
ENSSDUG00000011453	RNPS1	83	64.224	ENSMZEG00005006256	-	83	65.665	Maylandia_zebra
ENSSDUG00000011453	RNPS1	83	81.385	ENSMZEG00005012742	RNPS1	82	79.654	Maylandia_zebra
ENSSDUG00000011453	RNPS1	76	71.233	ENSMGAG00000010042	RNPS1	90	71.233	Meleagris_gallopavo
ENSSDUG00000011453	RNPS1	84	70.954	ENSMICG00000031543	RNPS1	85	70.417	Microcebus_murinus
ENSSDUG00000011453	RNPS1	84	71.369	ENSMOCG00000003429	Rnps1	85	70.833	Microtus_ochrogaster
ENSSDUG00000011453	RNPS1	76	76.526	ENSMMOG00000010863	RNPS1	77	76.279	Mola_mola
ENSSDUG00000011453	RNPS1	84	71.369	ENSMUSG00000034681	Rnps1	85	70.833	Mus_musculus
ENSSDUG00000011453	RNPS1	84	71.369	MGP_PahariEiJ_G0023498	Rnps1	85	70.833	Mus_pahari
ENSSDUG00000011453	RNPS1	84	71.369	MGP_SPRETEiJ_G0022092	Rnps1	85	70.833	Mus_spretus
ENSSDUG00000011453	RNPS1	84	71.250	ENSMLUG00000016808	RNPS1	78	70.711	Myotis_lucifugus
ENSSDUG00000011453	RNPS1	84	71.369	ENSNGAG00000023702	Rnps1	85	70.833	Nannospalax_galili
ENSSDUG00000011453	RNPS1	77	73.488	ENSNBRG00000023437	RNPS1	77	73.023	Neolamprologus_brichardi
ENSSDUG00000011453	RNPS1	88	69.880	ENSNLEG00000009243	RNPS1	98	69.262	Nomascus_leucogenys
ENSSDUG00000011453	RNPS1	84	70.833	ENSMEUG00000008882	RNPS1	78	70.293	Notamacropus_eugenii
ENSSDUG00000011453	RNPS1	84	70.833	ENSOPRG00000016422	RNPS1	78	70.293	Ochotona_princeps
ENSSDUG00000011453	RNPS1	60	53.293	ENSODEG00000002513	-	52	47.899	Octodon_degus
ENSSDUG00000011453	RNPS1	83	71.429	ENSORLG00000008033	RNPS1	94	72.816	Oryzias_latipes
ENSSDUG00000011453	RNPS1	82	71.304	ENSORLG00020020207	RNPS1	82	69.565	Oryzias_latipes_hni
ENSSDUG00000011453	RNPS1	82	71.739	ENSORLG00015000305	-	82	70.000	Oryzias_latipes_hsok
ENSSDUG00000011453	RNPS1	82	62.174	ENSORLG00015011183	RNPS1	72	69.397	Oryzias_latipes_hsok
ENSSDUG00000011453	RNPS1	71	69.756	ENSPPAG00000037836	-	86	69.756	Pan_paniscus
ENSSDUG00000011453	RNPS1	87	67.742	ENSPPAG00000011845	RNPS1	86	66.250	Pan_paniscus
ENSSDUG00000011453	RNPS1	84	71.784	ENSPPRG00000011255	RNPS1	85	71.250	Panthera_pardus
ENSSDUG00000011453	RNPS1	58	66.258	ENSPTIG00000015643	RNPS1	65	79.032	Panthera_tigris_altaica
ENSSDUG00000011453	RNPS1	73	69.231	ENSPTRG00000046326	-	81	69.231	Pan_troglodytes
ENSSDUG00000011453	RNPS1	84	71.369	ENSPTRG00000031310	RNPS1	85	70.833	Pan_troglodytes
ENSSDUG00000011453	RNPS1	84	71.369	ENSPANG00000015748	RNPS1	85	70.833	Papio_anubis
ENSSDUG00000011453	RNPS1	83	78.298	ENSPKIG00000023465	RNPS1	83	76.596	Paramormyrops_kingsleyae
ENSSDUG00000011453	RNPS1	84	72.083	ENSPSIG00000006048	RNPS1	78	71.548	Pelodiscus_sinensis
ENSSDUG00000011453	RNPS1	84	71.369	ENSPEMG00000012797	Rnps1	85	70.833	Peromyscus_maniculatus_bairdii
ENSSDUG00000011453	RNPS1	84	70.954	ENSPCIG00000025012	RNPS1	85	70.417	Phascolarctos_cinereus
ENSSDUG00000011453	RNPS1	58	67.485	ENSPCIG00000016114	-	60	77.419	Phascolarctos_cinereus
ENSSDUG00000011453	RNPS1	77	83.796	ENSPFOG00000009978	RNPS1	77	81.019	Poecilia_formosa
ENSSDUG00000011453	RNPS1	77	83.796	ENSPLAG00000009343	RNPS1	77	81.019	Poecilia_latipinna
ENSSDUG00000011453	RNPS1	77	83.796	ENSPMEG00000008552	RNPS1	77	81.019	Poecilia_mexicana
ENSSDUG00000011453	RNPS1	77	83.796	ENSPREG00000001843	RNPS1	77	81.019	Poecilia_reticulata
ENSSDUG00000011453	RNPS1	84	69.167	ENSPCAG00000004514	RNPS1	78	68.619	Procavia_capensis
ENSSDUG00000011453	RNPS1	84	70.954	ENSPCOG00000005478	RNPS1	85	70.417	Propithecus_coquereli
ENSSDUG00000011453	RNPS1	84	71.250	ENSPVAG00000005105	RNPS1	78	70.711	Pteropus_vampyrus
ENSSDUG00000011453	RNPS1	83	81.385	ENSPNYG00000000585	RNPS1	82	79.654	Pundamilia_nyererei
ENSSDUG00000011453	RNPS1	84	71.250	ENSRNOG00000008703	Rnps1	78	70.711	Rattus_norvegicus
ENSSDUG00000011453	RNPS1	84	71.369	ENSRBIG00000038965	-	88	70.711	Rhinopithecus_bieti
ENSSDUG00000011453	RNPS1	84	71.369	ENSRROG00000041252	RNPS1	85	70.833	Rhinopithecus_roxellana
ENSSDUG00000011453	RNPS1	84	71.369	ENSSBOG00000027927	RNPS1	85	70.833	Saimiri_boliviensis_boliviensis
ENSSDUG00000011453	RNPS1	84	70.833	ENSSHAG00000016951	RNPS1	78	70.293	Sarcophilus_harrisii
ENSSDUG00000011453	RNPS1	82	75.107	ENSSFOG00015019341	-	73	68.670	Scleropages_formosus
ENSSDUG00000011453	RNPS1	83	76.596	ENSSFOG00015022746	RNPS1	85	71.915	Scleropages_formosus
ENSSDUG00000011453	RNPS1	83	82.684	ENSSMAG00000016933	RNPS1	82	80.087	Scophthalmus_maximus
ENSSDUG00000011453	RNPS1	98	99.267	ENSSLDG00000021341	RNPS1	99	99.267	Seriola_lalandi_dorsalis
ENSSDUG00000011453	RNPS1	84	71.250	ENSSPUG00000016588	RNPS1	78	70.711	Sphenodon_punctatus
ENSSDUG00000011453	RNPS1	83	93.506	ENSSPAG00000009383	RNPS1	83	93.506	Stegastes_partitus
ENSSDUG00000011453	RNPS1	84	71.667	ENSSSCG00000008048	RNPS1	78	71.130	Sus_scrofa
ENSSDUG00000011453	RNPS1	84	71.667	ENSTGUG00000003237	RNPS1	84	71.130	Taeniopygia_guttata
ENSSDUG00000011453	RNPS1	83	79.399	ENSTRUG00000008602	RNPS1	83	81.116	Takifugu_rubripes
ENSSDUG00000011453	RNPS1	82	80.603	ENSTNIG00000009753	RNPS1	81	82.328	Tetraodon_nigroviridis
ENSSDUG00000011453	RNPS1	87	72.289	ENSTBEG00000009098	RNPS1	88	70.711	Tupaia_belangeri
ENSSDUG00000011453	RNPS1	84	71.250	ENSTTRG00000008220	RNPS1	78	70.711	Tursiops_truncatus
ENSSDUG00000011453	RNPS1	84	71.250	ENSUAMG00000004462	RNPS1	88	70.711	Ursus_americanus
ENSSDUG00000011453	RNPS1	84	71.250	ENSUMAG00000022327	RNPS1	78	70.711	Ursus_maritimus
ENSSDUG00000011453	RNPS1	84	71.250	ENSVVUG00000009244	RNPS1	78	70.711	Vulpes_vulpes
ENSSDUG00000011453	RNPS1	82	62.288	ENSXETG00000024439	rnps1	71	67.580	Xenopus_tropicalis
ENSSDUG00000011453	RNPS1	83	80.087	ENSXMAG00000004827	RNPS1	82	77.922	Xiphophorus_maculatus