EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000011557 (Gene tree)
Gene ID: 111220864
Gene Symbol: ddx39b
Alias: bat1|zgc:63773
Full Name: spliceosome RNA helicase DDX39B
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 15998 bases
Position: chrBDQW01000078.1:2392389-2408386
Accession: 111220864
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000015851	ResIII	PF04851.15	4.6e-07	1	1
ENSSDUP00000015851	DEAD	PF00270.29	2.6e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000016140	-	2273	XM_022744119	ENSSDUP00000015851	432 (aa)	XP_022599840	UPI000BBEF16C

Gene Model

Click here to download ENSSDUG00000011557's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG
sdu03015	mRNA surveillance pathway	KEGG
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000011557's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000011557	ddx39b	86	31.266	ENSSDUG00000008456	fam193b	62	31.266
ENSSDUG00000011557	ddx39b	88	34.794	ENSSDUG00000015980	ddx20	51	34.794
ENSSDUG00000011557	ddx39b	83	32.418	ENSSDUG00000018855	ddx27	50	32.418
ENSSDUG00000011557	ddx39b	100	87.963	ENSSDUG00000020224	ddx39aa	100	87.731
ENSSDUG00000011557	ddx39b	91	37.755	ENSSDUG00000010103	eif4a2	92	38.021
ENSSDUG00000011557	ddx39b	84	30.295	ENSSDUG00000007138	kif14	57	30.295
ENSSDUG00000011557	ddx39b	85	30.607	ENSSDUG00000003930	zgc:193690	83	30.607
ENSSDUG00000011557	ddx39b	88	30.318	ENSSDUG00000004279	-	65	30.025
ENSSDUG00000011557	ddx39b	80	91.908	ENSSDUG00000009075	DDX39A	100	91.908
ENSSDUG00000011557	ddx39b	87	32.905	ENSSDUG00000000334	ddx19	82	32.905
ENSSDUG00000011557	ddx39b	95	35.071	ENSSDUG00000007530	-	78	35.492
ENSSDUG00000011557	ddx39b	86	38.275	ENSSDUG00000004913	eif4a1b	91	38.378
ENSSDUG00000011557	ddx39b	84	38.082	ENSSDUG00000021512	eif4a3	90	38.005
ENSSDUG00000011557	ddx39b	89	35.751	ENSSDUG00000009713	ddx61	78	35.751
ENSSDUG00000011557	ddx39b	87	32.021	ENSSDUG00000009696	ddx49	76	32.021
ENSSDUG00000011557	ddx39b	78	36.686	ENSSDUG00000018110	ddx47	64	36.686
ENSSDUG00000011557	ddx39b	88	36.412	ENSSDUG00000019695	ddx6	77	36.412

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000011557	ddx39b	100	93.519	ENSG00000198563	DDX39B	100	93.287	Homo_sapiens
ENSSDUG00000011557	ddx39b	100	93.750	ENSAMEG00000009508	DDX39B	99	93.519	Ailuropoda_melanoleuca
ENSSDUG00000011557	ddx39b	99	97.892	ENSACIG00000004534	ddx39b	98	97.892	Amphilophus_citrinellus
ENSSDUG00000011557	ddx39b	100	98.148	ENSATEG00000012366	ddx39b	100	98.148	Anabas_testudineus
ENSSDUG00000011557	ddx39b	100	93.072	ENSACAG00000012240	DDX39B	100	92.610	Anolis_carolinensis
ENSSDUG00000011557	ddx39b	100	93.519	ENSANAG00000030372	DDX39B	100	93.287	Aotus_nancymaae
ENSSDUG00000011557	ddx39b	99	95.392	ENSACLG00000018759	ddx39b	99	95.392	Astatotilapia_calliptera
ENSSDUG00000011557	ddx39b	100	94.037	ENSAMXG00000017837	ddx39b	100	93.349	Astyanax_mexicanus
ENSSDUG00000011557	ddx39b	100	93.519	ENSBTAG00000014490	DDX39B	100	93.287	Bos_taurus
ENSSDUG00000011557	ddx39b	100	93.519	ENSCJAG00000003152	DDX39B	100	93.287	Callithrix_jacchus
ENSSDUG00000011557	ddx39b	100	93.750	ENSCAFG00000000509	DDX39B	100	96.129	Canis_familiaris
ENSSDUG00000011557	ddx39b	100	93.750	ENSCAFG00020020530	DDX39B	100	93.519	Canis_lupus_dingo
ENSSDUG00000011557	ddx39b	100	93.519	ENSCHIG00000004579	DDX39B	100	93.287	Capra_hircus
ENSSDUG00000011557	ddx39b	100	81.019	ENSTSYG00000029741	-	91	81.308	Carlito_syrichta
ENSSDUG00000011557	ddx39b	100	93.519	ENSTSYG00000010226	-	100	93.287	Carlito_syrichta
ENSSDUG00000011557	ddx39b	100	93.287	ENSCAPG00000010066	DDX39B	100	93.056	Cavia_aperea
ENSSDUG00000011557	ddx39b	100	93.287	ENSCPOG00000002335	DDX39B	100	93.056	Cavia_porcellus
ENSSDUG00000011557	ddx39b	100	93.519	ENSCCAG00000027897	DDX39B	100	93.287	Cebus_capucinus
ENSSDUG00000011557	ddx39b	99	84.615	ENSCATG00000043709	DDX39B	99	84.382	Cercocebus_atys
ENSSDUG00000011557	ddx39b	100	93.287	ENSCLAG00000014555	DDX39B	100	93.056	Chinchilla_lanigera
ENSSDUG00000011557	ddx39b	99	93.706	ENSCSAG00000008517	DDX39B	100	93.473	Chlorocebus_sabaeus
ENSSDUG00000011557	ddx39b	63	95.971	ENSCPBG00000014671	-	100	95.971	Chrysemys_picta_bellii
ENSSDUG00000011557	ddx39b	100	93.519	ENSCANG00000041217	DDX39B	100	93.287	Colobus_angolensis_palliatus
ENSSDUG00000011557	ddx39b	82	81.461	ENSCGRG00001021916	-	88	81.461	Cricetulus_griseus_chok1gshd
ENSSDUG00000011557	ddx39b	58	91.165	ENSCGRG00001017315	-	95	89.048	Cricetulus_griseus_chok1gshd
ENSSDUG00000011557	ddx39b	58	91.165	ENSCGRG00000012479	-	76	90.763	Cricetulus_griseus_crigri
ENSSDUG00000011557	ddx39b	100	94.023	ENSDARG00000036069	ddx39b	100	94.023	Danio_rerio
ENSSDUG00000011557	ddx39b	100	93.519	ENSDNOG00000010215	DDX39B	100	93.287	Dasypus_novemcinctus
ENSSDUG00000011557	ddx39b	88	94.180	ENSDORG00000004985	Ddx39b	100	93.915	Dipodomys_ordii
ENSSDUG00000011557	ddx39b	88	81.481	ENSETEG00000009649	DDX39B	87	80.952	Echinops_telfairi
ENSSDUG00000011557	ddx39b	100	93.519	ENSEASG00005017156	DDX39B	100	93.287	Equus_asinus_asinus
ENSSDUG00000011557	ddx39b	100	93.519	ENSECAG00000007750	DDX39B	100	93.287	Equus_caballus
ENSSDUG00000011557	ddx39b	100	94.444	ENSELUG00000017904	ddx39b	100	93.750	Esox_lucius
ENSSDUG00000011557	ddx39b	100	93.750	ENSFCAG00000004497	DDX39B	100	93.519	Felis_catus
ENSSDUG00000011557	ddx39b	100	93.287	ENSFDAG00000011074	DDX39B	100	93.056	Fukomys_damarensis
ENSSDUG00000011557	ddx39b	73	96.203	ENSGAGG00000001300	-	80	96.203	Gopherus_agassizii
ENSSDUG00000011557	ddx39b	100	93.519	ENSGGOG00000005989	DDX39B	100	93.287	Gorilla_gorilla
ENSSDUG00000011557	ddx39b	100	92.593	ENSHGLG00000019248	DDX39B	100	92.593	Heterocephalus_glaber_female
ENSSDUG00000011557	ddx39b	100	92.593	ENSHGLG00100011850	DDX39B	100	92.593	Heterocephalus_glaber_male
ENSSDUG00000011557	ddx39b	100	92.890	ENSIPUG00000015733	DDX39B	94	92.890	Ictalurus_punctatus
ENSSDUG00000011557	ddx39b	100	93.056	ENSSTOG00000012838	DDX39B	100	92.824	Ictidomys_tridecemlineatus
ENSSDUG00000011557	ddx39b	100	92.824	ENSJJAG00000005660	-	100	92.593	Jaculus_jaculus
ENSSDUG00000011557	ddx39b	99	81.967	ENSLBEG00000012254	ddx39b	99	81.967	Labrus_bergylta
ENSSDUG00000011557	ddx39b	65	81.495	ENSLBEG00000017177	-	81	81.495	Labrus_bergylta
ENSSDUG00000011557	ddx39b	100	84.703	ENSLACG00000002110	DDX39B	100	84.703	Latimeria_chalumnae
ENSSDUG00000011557	ddx39b	100	93.287	ENSLAFG00000014202	DDX39B	100	93.056	Loxodonta_africana
ENSSDUG00000011557	ddx39b	100	93.519	ENSMFAG00000034233	DDX39B	100	93.287	Macaca_fascicularis
ENSSDUG00000011557	ddx39b	100	93.519	ENSMMUG00000008839	DDX39B	100	93.287	Macaca_mulatta
ENSSDUG00000011557	ddx39b	100	93.519	ENSMNEG00000041059	DDX39B	100	93.287	Macaca_nemestrina
ENSSDUG00000011557	ddx39b	100	93.519	ENSMLEG00000043791	DDX39B	100	93.287	Mandrillus_leucophaeus
ENSSDUG00000011557	ddx39b	99	95.622	ENSMZEG00005017654	ddx39b	99	95.622	Maylandia_zebra
ENSSDUG00000011557	ddx39b	100	93.287	ENSMAUG00000008059	Ddx39b	100	93.056	Mesocricetus_auratus
ENSSDUG00000011557	ddx39b	100	93.519	ENSMICG00000017349	DDX39B	100	93.287	Microcebus_murinus
ENSSDUG00000011557	ddx39b	100	93.287	ENSMOCG00000011169	Ddx39b	100	93.056	Microtus_ochrogaster
ENSSDUG00000011557	ddx39b	88	93.684	ENSMODG00000015791	DDX39B	88	93.421	Monodelphis_domestica
ENSSDUG00000011557	ddx39b	100	93.287	ENSMUSG00000019432	Ddx39b	100	96.622	Mus_musculus
ENSSDUG00000011557	ddx39b	100	93.287	MGP_PahariEiJ_G0020513	Ddx39b	100	96.622	Mus_pahari
ENSSDUG00000011557	ddx39b	100	93.287	MGP_SPRETEiJ_G0022424	Ddx39b	100	93.056	Mus_spretus
ENSSDUG00000011557	ddx39b	100	93.750	ENSMPUG00000011407	DDX39B	100	93.519	Mustela_putorius_furo
ENSSDUG00000011557	ddx39b	72	96.141	ENSMLUG00000001681	DDX39B	100	96.141	Myotis_lucifugus
ENSSDUG00000011557	ddx39b	100	93.519	ENSNGAG00000022948	Ddx39b	100	93.287	Nannospalax_galili
ENSSDUG00000011557	ddx39b	66	95.789	ENSNLEG00000006094	DDX39B	81	95.789	Nomascus_leucogenys
ENSSDUG00000011557	ddx39b	86	96.847	ENSMEUG00000008264	DDX39B	86	96.847	Notamacropus_eugenii
ENSSDUG00000011557	ddx39b	100	93.750	ENSOPRG00000011923	DDX39B	100	93.519	Ochotona_princeps
ENSSDUG00000011557	ddx39b	100	93.287	ENSODEG00000018083	DDX39B	100	93.056	Octodon_degus
ENSSDUG00000011557	ddx39b	100	96.759	ENSONIG00000004740	ddx39b	100	96.759	Oreochromis_niloticus
ENSSDUG00000011557	ddx39b	56	90.456	ENSOANG00000008361	DDX39B	95	90.041	Ornithorhynchus_anatinus
ENSSDUG00000011557	ddx39b	100	90.380	ENSOCUG00000024126	DDX39B	100	90.157	Oryctolagus_cuniculus
ENSSDUG00000011557	ddx39b	83	88.503	ENSOGAG00000009067	-	100	95.370	Otolemur_garnettii
ENSSDUG00000011557	ddx39b	100	92.610	ENSOGAG00000028850	-	100	92.379	Otolemur_garnettii
ENSSDUG00000011557	ddx39b	100	93.519	ENSOARG00000008787	DDX39B	98	93.287	Ovis_aries
ENSSDUG00000011557	ddx39b	100	93.519	ENSPPAG00000043072	DDX39B	100	93.287	Pan_paniscus
ENSSDUG00000011557	ddx39b	100	93.750	ENSPPRG00000001913	DDX39B	100	93.519	Panthera_pardus
ENSSDUG00000011557	ddx39b	100	92.824	ENSPTIG00000017669	DDX39B	100	92.593	Panthera_tigris_altaica
ENSSDUG00000011557	ddx39b	100	93.519	ENSPTRG00000032509	DDX39B	100	93.287	Pan_troglodytes
ENSSDUG00000011557	ddx39b	100	93.519	ENSPANG00000018609	DDX39B	100	93.287	Papio_anubis
ENSSDUG00000011557	ddx39b	100	92.449	ENSPKIG00000011324	ddx39b	100	92.220	Paramormyrops_kingsleyae
ENSSDUG00000011557	ddx39b	100	93.056	ENSPEMG00000016905	Ddx39b	100	92.824	Peromyscus_maniculatus_bairdii
ENSSDUG00000011557	ddx39b	100	93.519	ENSPCIG00000017572	DDX39B	100	93.287	Phascolarctos_cinereus
ENSSDUG00000011557	ddx39b	100	93.519	ENSPPYG00000016433	DDX39B	100	93.287	Pongo_abelii
ENSSDUG00000011557	ddx39b	66	95.775	ENSPCAG00000003484	DDX39B	100	95.775	Procavia_capensis
ENSSDUG00000011557	ddx39b	100	93.519	ENSPCOG00000018656	DDX39B	100	93.287	Propithecus_coquereli
ENSSDUG00000011557	ddx39b	100	93.519	ENSPVAG00000004653	DDX39B	100	93.287	Pteropus_vampyrus
ENSSDUG00000011557	ddx39b	98	86.792	ENSPNYG00000010382	ddx39b	98	86.885	Pundamilia_nyererei
ENSSDUG00000011557	ddx39b	100	94.266	ENSPNAG00000026926	ddx39b	100	93.349	Pygocentrus_nattereri
ENSSDUG00000011557	ddx39b	100	93.287	ENSRNOG00000000841	Ddx39b	100	93.056	Rattus_norvegicus
ENSSDUG00000011557	ddx39b	100	83.565	ENSRBIG00000031309	DDX39B	100	83.333	Rhinopithecus_bieti
ENSSDUG00000011557	ddx39b	100	93.519	ENSRROG00000039517	DDX39B	100	93.287	Rhinopithecus_roxellana
ENSSDUG00000011557	ddx39b	100	83.565	ENSSBOG00000035513	-	100	83.333	Saimiri_boliviensis_boliviensis
ENSSDUG00000011557	ddx39b	100	93.519	ENSSHAG00000003209	DDX39B	100	93.287	Sarcophilus_harrisii
ENSSDUG00000011557	ddx39b	100	92.906	ENSSFOG00015016107	ddx39b	100	92.677	Scleropages_formosus
ENSSDUG00000011557	ddx39b	100	99.306	ENSSLDG00000015763	ddx39b	100	99.306	Seriola_lalandi_dorsalis
ENSSDUG00000011557	ddx39b	88	82.804	ENSSARG00000005245	DDX39B	100	82.540	Sorex_araneus
ENSSDUG00000011557	ddx39b	100	93.287	ENSSPUG00000012805	DDX39B	100	92.824	Sphenodon_punctatus
ENSSDUG00000011557	ddx39b	100	93.519	ENSSSCG00000001400	DDX39B	100	96.532	Sus_scrofa
ENSSDUG00000011557	ddx39b	100	71.065	ENSTBEG00000003721	DDX39B	100	70.833	Tupaia_belangeri
ENSSDUG00000011557	ddx39b	100	85.355	ENSTTRG00000014074	DDX39B	100	85.126	Tursiops_truncatus
ENSSDUG00000011557	ddx39b	100	81.336	ENSUAMG00000027335	DDX39B	100	81.106	Ursus_americanus
ENSSDUG00000011557	ddx39b	100	84.954	ENSUMAG00000015124	DDX39B	100	84.722	Ursus_maritimus
ENSSDUG00000011557	ddx39b	62	86.325	ENSVPAG00000009167	-	74	85.470	Vicugna_pacos
ENSSDUG00000011557	ddx39b	100	93.750	ENSVVUG00000019518	DDX39B	99	93.519	Vulpes_vulpes
ENSSDUG00000011557	ddx39b	100	81.609	ENSXETG00000002498	ddx39b	100	80.184	Xenopus_tropicalis