EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000011598 (Gene tree)
Gene ID: 111220844
Gene Symbol: vars2
Alias: si:ch211-152p11.2
Full Name: valyl-tRNA synthetase 2%2C mitochondrial
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 28081 bases
Position: chrBDQW01000078.1:2425632-2453712
Accession: 111220844
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000015887	tRNA-synt_1g	PF09334.11	8.8e-16	1	1
ENSSDUP00000015887	Anticodon_1	PF08264.13	1.3e-35	1	1
ENSSDUP00000015887	tRNA-synt_1	PF00133.22	1.7e-198	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000016175	-	4708	XM_022744085	ENSSDUP00000015887	1079 (aa)	XP_022599806	UPI000BBE1763

Gene Model

Click here to download ENSSDUG00000011598's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu00970	Aminoacyl-tRNA biosynthesis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000011598's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000011598	vars2	96	48.015	ENSSDUG00000014177	vars	77	49.701

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000011598	vars2	100	84.488	ENSAPOG00000007396	vars2	100	84.488	Acanthochromis_polyacanthus
ENSSDUG00000011598	vars2	95	51.625	ENSAMEG00000012997	VARS2	92	52.085	Ailuropoda_melanoleuca
ENSSDUG00000011598	vars2	100	81.810	ENSACIG00000004344	vars2	99	81.163	Amphilophus_citrinellus
ENSSDUG00000011598	vars2	100	84.395	ENSAOCG00000000476	vars2	100	84.395	Amphiprion_ocellaris
ENSSDUG00000011598	vars2	100	84.303	ENSAPEG00000008646	vars2	97	84.303	Amphiprion_percula
ENSSDUG00000011598	vars2	100	85.767	ENSATEG00000012291	vars2	100	85.675	Anabas_testudineus
ENSSDUG00000011598	vars2	96	53.480	ENSACAG00000022093	VARS2	92	54.500	Anolis_carolinensis
ENSSDUG00000011598	vars2	97	50.614	ENSANAG00000038018	VARS2	93	51.373	Aotus_nancymaae
ENSSDUG00000011598	vars2	100	81.382	ENSACLG00000018673	vars2	100	81.198	Astatotilapia_calliptera
ENSSDUG00000011598	vars2	96	72.222	ENSAMXG00000017773	vars2	94	74.306	Astyanax_mexicanus
ENSSDUG00000011598	vars2	97	51.848	ENSBTAG00000010698	VARS2	93	52.544	Bos_taurus
ENSSDUG00000011598	vars2	97	50.425	ENSCJAG00000019826	VARS2	93	51.373	Callithrix_jacchus
ENSSDUG00000011598	vars2	97	52.083	ENSCAFG00000000454	VARS2	92	53.069	Canis_familiaris
ENSSDUG00000011598	vars2	84	56.940	ENSCAFG00020019387	VARS2	90	57.143	Canis_lupus_dingo
ENSSDUG00000011598	vars2	97	51.754	ENSCHIG00000007847	VARS2	93	52.446	Capra_hircus
ENSSDUG00000011598	vars2	98	51.831	ENSTSYG00000009904	VARS2	93	52.642	Carlito_syrichta
ENSSDUG00000011598	vars2	88	52.521	ENSCAPG00000017770	VARS2	99	52.521	Cavia_aperea
ENSSDUG00000011598	vars2	98	51.313	ENSCPOG00000021834	VARS2	92	52.584	Cavia_porcellus
ENSSDUG00000011598	vars2	99	50.047	ENSCCAG00000037907	VARS2	93	51.471	Cebus_capucinus
ENSSDUG00000011598	vars2	97	50.952	ENSCATG00000032554	VARS2	93	51.969	Cercocebus_atys
ENSSDUG00000011598	vars2	98	52.015	ENSCLAG00000002889	VARS2	93	52.688	Chinchilla_lanigera
ENSSDUG00000011598	vars2	96	51.294	ENSCSAG00000008327	VARS2	93	51.823	Chlorocebus_sabaeus
ENSSDUG00000011598	vars2	91	55.567	ENSCPBG00000021502	VARS2	96	55.567	Chrysemys_picta_bellii
ENSSDUG00000011598	vars2	97	51.236	ENSCANG00000014991	VARS2	92	51.808	Colobus_angolensis_palliatus
ENSSDUG00000011598	vars2	98	51.828	ENSCGRG00001021535	Vars2	93	52.642	Cricetulus_griseus_chok1gshd
ENSSDUG00000011598	vars2	98	51.828	ENSCGRG00000014112	Vars2	93	52.642	Cricetulus_griseus_crigri
ENSSDUG00000011598	vars2	99	70.334	ENSCSEG00000015432	vars2	94	82.635	Cynoglossus_semilaevis
ENSSDUG00000011598	vars2	66	80.141	ENSCVAG00000017765	vars2	98	80.141	Cyprinodon_variegatus
ENSSDUG00000011598	vars2	99	70.353	ENSDARG00000056717	vars2	100	70.260	Danio_rerio
ENSSDUG00000011598	vars2	80	50.229	ENSDORG00000008516	Vars2	92	50.755	Dipodomys_ordii
ENSSDUG00000011598	vars2	98	45.794	ENSETEG00000014844	VARS2	93	46.484	Echinops_telfairi
ENSSDUG00000011598	vars2	97	51.183	ENSEASG00005019997	VARS2	95	55.451	Equus_asinus_asinus
ENSSDUG00000011598	vars2	97	51.469	ENSECAG00000018202	VARS2	93	52.055	Equus_caballus
ENSSDUG00000011598	vars2	64	59.804	ENSEEUG00000012591	-	62	59.804	Erinaceus_europaeus
ENSSDUG00000011598	vars2	99	71.717	ENSELUG00000017824	vars2	99	71.179	Esox_lucius
ENSSDUG00000011598	vars2	95	51.901	ENSFCAG00000010531	VARS2	95	52.035	Felis_catus
ENSSDUG00000011598	vars2	98	51.080	ENSFDAG00000017216	VARS2	93	51.562	Fukomys_damarensis
ENSSDUG00000011598	vars2	94	74.729	ENSFHEG00000013932	vars2	98	74.209	Fundulus_heteroclitus
ENSSDUG00000011598	vars2	90	72.569	ENSGMOG00000018960	vars2	99	72.569	Gadus_morhua
ENSSDUG00000011598	vars2	93	78.909	ENSGAFG00000004737	vars2	92	78.909	Gambusia_affinis
ENSSDUG00000011598	vars2	94	80.910	ENSGACG00000001464	vars2	100	80.910	Gasterosteus_aculeatus
ENSSDUG00000011598	vars2	91	55.197	ENSGAGG00000011652	VARS2	98	55.197	Gopherus_agassizii
ENSSDUG00000011598	vars2	97	50.952	ENSGGOG00000014587	VARS2	93	51.969	Gorilla_gorilla
ENSSDUG00000011598	vars2	99	78.446	ENSHBUG00000002448	vars2	100	78.261	Haplochromis_burtoni
ENSSDUG00000011598	vars2	97	50.760	ENSHGLG00000012886	VARS2	90	51.758	Heterocephalus_glaber_female
ENSSDUG00000011598	vars2	97	50.665	ENSHGLG00100016535	VARS2	93	51.660	Heterocephalus_glaber_male
ENSSDUG00000011598	vars2	70	78.296	ENSHCOG00000017907	vars2	99	78.296	Hippocampus_comes
ENSSDUG00000011598	vars2	93	73.960	ENSIPUG00000015573	Vars2	95	73.288	Ictalurus_punctatus
ENSSDUG00000011598	vars2	97	50.614	ENSSTOG00000009924	VARS2	93	51.076	Ictidomys_tridecemlineatus
ENSSDUG00000011598	vars2	98	50.608	ENSJJAG00000011144	Vars2	93	51.808	Jaculus_jaculus
ENSSDUG00000011598	vars2	99	79.098	ENSKMAG00000001393	vars2	99	78.913	Kryptolebias_marmoratus
ENSSDUG00000011598	vars2	99	77.768	ENSLBEG00000011949	vars2	99	77.583	Labrus_bergylta
ENSSDUG00000011598	vars2	51	85.326	ENSLBEG00000005480	-	81	84.964	Labrus_bergylta
ENSSDUG00000011598	vars2	96	51.092	ENSLACG00000001576	-	99	51.187	Latimeria_chalumnae
ENSSDUG00000011598	vars2	98	51.779	ENSLAFG00000015183	VARS2	94	52.085	Loxodonta_africana
ENSSDUG00000011598	vars2	97	51.141	ENSMFAG00000042367	VARS2	93	51.772	Macaca_fascicularis
ENSSDUG00000011598	vars2	97	51.236	ENSMMUG00000018609	VARS2	93	51.870	Macaca_mulatta
ENSSDUG00000011598	vars2	97	51.426	ENSMNEG00000043163	VARS2	93	52.067	Macaca_nemestrina
ENSSDUG00000011598	vars2	97	50.857	ENSMLEG00000041728	VARS2	90	52.165	Mandrillus_leucophaeus
ENSSDUG00000011598	vars2	99	83.225	ENSMAMG00000020339	vars2	99	83.225	Mastacembelus_armatus
ENSSDUG00000011598	vars2	100	81.290	ENSMZEG00005017669	vars2	100	81.106	Maylandia_zebra
ENSSDUG00000011598	vars2	98	51.727	ENSMAUG00000018946	Vars2	93	52.590	Mesocricetus_auratus
ENSSDUG00000011598	vars2	82	56.054	ENSMICG00000005365	VARS2	92	58.463	Microcebus_murinus
ENSSDUG00000011598	vars2	89	58.786	ENSMOCG00000014607	Vars2	91	60.400	Microtus_ochrogaster
ENSSDUG00000011598	vars2	100	80.463	ENSMMOG00000012122	vars2	100	80.463	Mola_mola
ENSSDUG00000011598	vars2	94	51.163	ENSMODG00000015848	VARS2	91	51.327	Monodelphis_domestica
ENSSDUG00000011598	vars2	99	81.129	ENSMALG00000009217	vars2	99	82.840	Monopterus_albus
ENSSDUG00000011598	vars2	97	52.232	MGP_CAROLIEiJ_G0021529	Vars2	97	55.709	Mus_caroli
ENSSDUG00000011598	vars2	97	51.954	ENSMUSG00000038838	Vars2	96	55.536	Mus_musculus
ENSSDUG00000011598	vars2	98	51.507	MGP_PahariEiJ_G0020523	Vars2	93	56.607	Mus_pahari
ENSSDUG00000011598	vars2	97	52.145	MGP_SPRETEiJ_G0022436	Vars2	97	55.363	Mus_spretus
ENSSDUG00000011598	vars2	97	52.087	ENSMPUG00000011643	VARS2	94	52.224	Mustela_putorius_furo
ENSSDUG00000011598	vars2	93	52.871	ENSMLUG00000002356	VARS2	87	53.360	Myotis_lucifugus
ENSSDUG00000011598	vars2	97	48.004	ENSNGAG00000020607	Vars2	93	48.438	Nannospalax_galili
ENSSDUG00000011598	vars2	62	73.871	ENSNBRG00000001624	vars2	57	73.871	Neolamprologus_brichardi
ENSSDUG00000011598	vars2	96	50.336	ENSNLEG00000005625	VARS2	91	51.338	Nomascus_leucogenys
ENSSDUG00000011598	vars2	79	55.833	ENSMEUG00000014475	VARS2	89	55.833	Notamacropus_eugenii
ENSSDUG00000011598	vars2	89	52.915	ENSOPRG00000000682	VARS2	83	59.036	Ochotona_princeps
ENSSDUG00000011598	vars2	97	51.326	ENSODEG00000017965	VARS2	93	51.859	Octodon_degus
ENSSDUG00000011598	vars2	93	61.606	ENSONIG00000004734	vars2	100	61.606	Oreochromis_niloticus
ENSSDUG00000011598	vars2	68	45.382	ENSOANG00000000398	-	92	43.878	Ornithorhynchus_anatinus
ENSSDUG00000011598	vars2	97	48.244	ENSOCUG00000021496	VARS2	60	49.563	Oryctolagus_cuniculus
ENSSDUG00000011598	vars2	99	74.494	ENSORLG00000010632	vars2	99	74.309	Oryzias_latipes
ENSSDUG00000011598	vars2	99	74.401	ENSORLG00020018584	vars2	95	76.323	Oryzias_latipes_hni
ENSSDUG00000011598	vars2	94	76.870	ENSORLG00015010408	vars2	99	74.401	Oryzias_latipes_hsok
ENSSDUG00000011598	vars2	95	76.482	ENSOMEG00000008360	vars2	95	76.397	Oryzias_melastigma
ENSSDUG00000011598	vars2	97	51.277	ENSOGAG00000006087	VARS2	91	51.758	Otolemur_garnettii
ENSSDUG00000011598	vars2	97	51.136	ENSOARG00000010844	VARS2	92	51.808	Ovis_aries
ENSSDUG00000011598	vars2	97	51.143	ENSPPAG00000041141	VARS2	93	52.067	Pan_paniscus
ENSSDUG00000011598	vars2	95	52.186	ENSPPRG00000006751	VARS2	93	52.326	Panthera_pardus
ENSSDUG00000011598	vars2	95	52.141	ENSPTIG00000017799	VARS2	97	52.830	Panthera_tigris_altaica
ENSSDUG00000011598	vars2	97	51.143	ENSPTRG00000034497	VARS2	93	52.067	Pan_troglodytes
ENSSDUG00000011598	vars2	97	51.048	ENSPANG00000018481	VARS2	91	53.616	Papio_anubis
ENSSDUG00000011598	vars2	100	67.620	ENSPKIG00000011372	vars2	99	67.620	Paramormyrops_kingsleyae
ENSSDUG00000011598	vars2	58	63.994	ENSPSIG00000006206	VARS2	92	63.721	Pelodiscus_sinensis
ENSSDUG00000011598	vars2	99	72.475	ENSPMGG00000000465	vars2	96	74.085	Periophthalmus_magnuspinnatus
ENSSDUG00000011598	vars2	97	52.050	ENSPEMG00000014691	Vars2	93	52.441	Peromyscus_maniculatus_bairdii
ENSSDUG00000011598	vars2	95	51.212	ENSPCIG00000015040	VARS2	92	51.833	Phascolarctos_cinereus
ENSSDUG00000011598	vars2	98	76.714	ENSPFOG00000017616	vars2	94	77.918	Poecilia_formosa
ENSSDUG00000011598	vars2	99	76.525	ENSPLAG00000019778	vars2	95	78.168	Poecilia_latipinna
ENSSDUG00000011598	vars2	99	76.340	ENSPMEG00000011123	vars2	95	77.973	Poecilia_mexicana
ENSSDUG00000011598	vars2	97	68.780	ENSPREG00000014998	vars2	94	70.452	Poecilia_reticulata
ENSSDUG00000011598	vars2	97	51.143	ENSPPYG00000016424	VARS2	93	52.165	Pongo_abelii
ENSSDUG00000011598	vars2	64	54.667	ENSPCAG00000006946	VARS2	77	54.667	Procavia_capensis
ENSSDUG00000011598	vars2	96	50.904	ENSPCOG00000014839	VARS2	90	51.572	Propithecus_coquereli
ENSSDUG00000011598	vars2	98	50.943	ENSPVAG00000004197	VARS2	93	51.761	Pteropus_vampyrus
ENSSDUG00000011598	vars2	87	86.523	ENSPNYG00000010314	vars2	100	86.523	Pundamilia_nyererei
ENSSDUG00000011598	vars2	96	72.004	ENSPNAG00000026793	vars2	95	71.950	Pygocentrus_nattereri
ENSSDUG00000011598	vars2	97	51.576	ENSRNOG00000000833	Vars2	93	51.957	Rattus_norvegicus
ENSSDUG00000011598	vars2	97	51.189	ENSRBIG00000032725	VARS2	93	51.812	Rhinopithecus_bieti
ENSSDUG00000011598	vars2	97	50.952	ENSRROG00000043847	VARS2	93	51.969	Rhinopithecus_roxellana
ENSSDUG00000011598	vars2	97	49.676	ENSSBOG00000033240	VARS2	91	50.384	Saimiri_boliviensis_boliviensis
ENSSDUG00000011598	vars2	97	51.464	ENSSHAG00000009307	VARS2	93	52.372	Sarcophilus_harrisii
ENSSDUG00000011598	vars2	98	68.431	ENSSFOG00015016187	vars2	95	69.032	Scleropages_formosus
ENSSDUG00000011598	vars2	100	84.523	ENSSMAG00000020842	vars2	99	84.523	Scophthalmus_maximus
ENSSDUG00000011598	vars2	100	95.564	ENSSLDG00000015492	vars2	100	95.564	Seriola_lalandi_dorsalis
ENSSDUG00000011598	vars2	51	62.222	ENSSARG00000003786	-	61	62.222	Sorex_araneus
ENSSDUG00000011598	vars2	80	60.490	ENSSPUG00000014700	VARS2	88	60.490	Sphenodon_punctatus
ENSSDUG00000011598	vars2	99	80.389	ENSSPAG00000004654	vars2	100	79.093	Stegastes_partitus
ENSSDUG00000011598	vars2	97	52.000	ENSSSCG00000001384	VARS2	90	56.813	Sus_scrofa
ENSSDUG00000011598	vars2	99	75.399	ENSTRUG00000005264	vars2	99	75.740	Takifugu_rubripes
ENSSDUG00000011598	vars2	97	73.073	ENSTNIG00000005916	vars2	95	73.745	Tetraodon_nigroviridis
ENSSDUG00000011598	vars2	90	53.807	ENSTTRG00000012243	VARS2	86	57.317	Tursiops_truncatus
ENSSDUG00000011598	vars2	97	51.610	ENSUAMG00000026124	VARS2	99	53.135	Ursus_americanus
ENSSDUG00000011598	vars2	97	51.564	ENSUMAG00000019894	VARS2	94	52.077	Ursus_maritimus
ENSSDUG00000011598	vars2	97	52.178	ENSVVUG00000010754	VARS2	87	53.280	Vulpes_vulpes
ENSSDUG00000011598	vars2	88	52.642	ENSXETG00000003036	vars2	98	52.642	Xenopus_tropicalis
ENSSDUG00000011598	vars2	97	78.612	ENSXCOG00000003455	vars2	99	78.116	Xiphophorus_couchianus
ENSSDUG00000011598	vars2	99	79.186	ENSXMAG00000013523	vars2	99	78.889	Xiphophorus_maculatus