EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000011608 (Gene tree)
Gene ID: 111232990
Gene Symbol: pcbp3
Alias: -
Full Name: poly(rC)-binding protein 3-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 8690 bases
Position: chrBDQW01000018.1:706337-715026
Accession: 111232990
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000015920	KH_1	PF00013.29	1.6e-50	1	3
ENSSDUP00000015920	KH_1	PF00013.29	1.6e-50	2	3
ENSSDUP00000015920	KH_1	PF00013.29	1.6e-50	3	3
ENSSDUP00000015920	KH_2	PF07650.17	2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000016208	-	993	XM_022760710	ENSSDUP00000015920	330 (aa)	XP_022616431	-

Gene Model

Click here to download ENSSDUG00000011608's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000011608's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000011608	pcbp3	68	55.556	ENSSDUG00000023797	hnrpkl	51	55.556
ENSSDUG00000011608	pcbp3	74	67.347	ENSSDUG00000019371	zgc:110045	65	67.347
ENSSDUG00000011608	pcbp3	63	37.879	ENSSDUG00000002110	KHSRP	52	37.879
ENSSDUG00000011608	pcbp3	92	39.683	ENSSDUG00000005975	-	53	39.683
ENSSDUG00000011608	pcbp3	62	38.806	ENSSDUG00000001795	-	81	32.278
ENSSDUG00000011608	pcbp3	68	55.556	ENSSDUG00000022165	hnrnpk	50	55.556
ENSSDUG00000011608	pcbp3	96	60.550	ENSSDUG00000015540	-	71	60.550
ENSSDUG00000011608	pcbp3	91	37.500	ENSSDUG00000023495	fubp3	67	37.500
ENSSDUG00000011608	pcbp3	88	41.818	ENSSDUG00000017581	igf2bp2b	62	34.932
ENSSDUG00000011608	pcbp3	96	70.181	ENSSDUG00000021325	pcbp2	95	70.181
ENSSDUG00000011608	pcbp3	96	70.245	ENSSDUG00000018636	PCBP2	95	70.245
ENSSDUG00000011608	pcbp3	89	61.409	ENSSDUG00000017719	pcbp4	69	61.409
ENSSDUG00000011608	pcbp3	62	42.188	ENSSDUG00000002390	khsrp	54	42.188
ENSSDUG00000011608	pcbp3	99	88.822	ENSSDUG00000008502	-	95	88.822

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000011608	pcbp3	99	88.889	ENSAPOG00000016582	-	97	88.889	Acanthochromis_polyacanthus
ENSSDUG00000011608	pcbp3	99	92.073	ENSAPOG00000020003	pcbp3	87	92.073	Acanthochromis_polyacanthus
ENSSDUG00000011608	pcbp3	97	85.163	ENSAMEG00000001697	-	95	85.163	Ailuropoda_melanoleuca
ENSSDUG00000011608	pcbp3	99	98.176	ENSACIG00000010933	pcbp3	95	98.176	Amphilophus_citrinellus
ENSSDUG00000011608	pcbp3	99	89.458	ENSACIG00000002739	-	97	89.458	Amphilophus_citrinellus
ENSSDUG00000011608	pcbp3	89	86.184	ENSAOCG00000007806	-	96	86.184	Amphiprion_ocellaris
ENSSDUG00000011608	pcbp3	99	89.881	ENSAOCG00000008592	-	98	89.881	Amphiprion_ocellaris
ENSSDUG00000011608	pcbp3	99	87.988	ENSAPEG00000005209	-	97	87.988	Amphiprion_percula
ENSSDUG00000011608	pcbp3	99	97.313	ENSAPEG00000008011	pcbp3	95	97.313	Amphiprion_percula
ENSSDUG00000011608	pcbp3	99	89.091	ENSATEG00000009833	-	97	89.091	Anabas_testudineus
ENSSDUG00000011608	pcbp3	99	99.083	ENSATEG00000015787	-	100	99.083	Anabas_testudineus
ENSSDUG00000011608	pcbp3	97	83.529	ENSAPLG00000002975	-	95	83.529	Anas_platyrhynchos
ENSSDUG00000011608	pcbp3	96	77.841	ENSAPLG00000008951	-	78	77.841	Anas_platyrhynchos
ENSSDUG00000011608	pcbp3	97	88.728	ENSACAG00000004607	-	96	88.728	Anolis_carolinensis
ENSSDUG00000011608	pcbp3	97	84.404	ENSACAG00000009819	-	94	84.404	Anolis_carolinensis
ENSSDUG00000011608	pcbp3	76	88.104	ENSANAG00000030702	-	96	88.104	Aotus_nancymaae
ENSSDUG00000011608	pcbp3	99	89.297	ENSACLG00000003801	-	96	89.297	Astatotilapia_calliptera
ENSSDUG00000011608	pcbp3	99	97.015	ENSACLG00000011835	pcbp3	95	97.015	Astatotilapia_calliptera
ENSSDUG00000011608	pcbp3	96	66.471	ENSAMXG00000001760	zgc:110045	72	66.471	Astyanax_mexicanus
ENSSDUG00000011608	pcbp3	99	94.030	ENSAMXG00000003440	pcbp3	95	94.030	Astyanax_mexicanus
ENSSDUG00000011608	pcbp3	99	87.730	ENSAMXG00000013588	-	100	87.730	Astyanax_mexicanus
ENSSDUG00000011608	pcbp3	91	83.730	ENSCAFG00020019472	-	77	89.862	Canis_lupus_dingo
ENSSDUG00000011608	pcbp3	97	86.280	ENSCSAG00000007440	-	86	86.280	Chlorocebus_sabaeus
ENSSDUG00000011608	pcbp3	97	86.585	ENSCPBG00000012151	-	95	82.081	Chrysemys_picta_bellii
ENSSDUG00000011608	pcbp3	96	84.049	ENSCPBG00000000733	-	72	84.049	Chrysemys_picta_bellii
ENSSDUG00000011608	pcbp3	99	74.074	ENSCSEG00000016984	-	97	74.074	Cynoglossus_semilaevis
ENSSDUG00000011608	pcbp3	99	90.244	ENSCSEG00000000822	pcbp3	99	90.244	Cynoglossus_semilaevis
ENSSDUG00000011608	pcbp3	99	87.688	ENSCVAG00000005262	-	97	87.688	Cyprinodon_variegatus
ENSSDUG00000011608	pcbp3	99	97.605	ENSCVAG00000014482	pcbp3	95	97.605	Cyprinodon_variegatus
ENSSDUG00000011608	pcbp3	99	94.328	ENSDARG00000054378	pcbp3	97	94.328	Danio_rerio
ENSSDUG00000011608	pcbp3	97	75.000	ENSETEG00000015988	-	95	75.000	Echinops_telfairi
ENSSDUG00000011608	pcbp3	88	69.072	ENSEBUG00000016192	pcbp3	99	69.072	Eptatretus_burgeri
ENSSDUG00000011608	pcbp3	96	72.727	ENSEBUG00000007485	-	92	70.661	Eptatretus_burgeri
ENSSDUG00000011608	pcbp3	72	64.919	ENSEBUG00000005495	pcbp3	68	64.919	Eptatretus_burgeri
ENSSDUG00000011608	pcbp3	99	95.252	ENSELUG00000003521	pcbp3	95	95.252	Esox_lucius
ENSSDUG00000011608	pcbp3	99	87.463	ENSELUG00000001560	-	96	87.611	Esox_lucius
ENSSDUG00000011608	pcbp3	97	86.544	ENSFALG00000003949	-	95	86.544	Ficedula_albicollis
ENSSDUG00000011608	pcbp3	96	78.125	ENSFALG00000004411	-	74	78.125	Ficedula_albicollis
ENSSDUG00000011608	pcbp3	99	87.988	ENSFHEG00000006539	-	97	87.988	Fundulus_heteroclitus
ENSSDUG00000011608	pcbp3	99	92.331	ENSFHEG00000016615	pcbp3	95	92.331	Fundulus_heteroclitus
ENSSDUG00000011608	pcbp3	98	74.366	ENSGMOG00000011992	pcbp3	96	74.438	Gadus_morhua
ENSSDUG00000011608	pcbp3	98	67.045	ENSGMOG00000008611	-	100	67.045	Gadus_morhua
ENSSDUG00000011608	pcbp3	97	88.921	ENSGALG00000004394	-	96	88.921	Gallus_gallus
ENSSDUG00000011608	pcbp3	98	85.714	ENSGALG00000013155	-	98	85.714	Gallus_gallus
ENSSDUG00000011608	pcbp3	99	96.096	ENSGAFG00000011430	pcbp3	96	96.096	Gambusia_affinis
ENSSDUG00000011608	pcbp3	99	87.164	ENSGAFG00000010274	-	95	87.164	Gambusia_affinis
ENSSDUG00000011608	pcbp3	99	82.153	ENSGACG00000002266	-	96	82.153	Gasterosteus_aculeatus
ENSSDUG00000011608	pcbp3	99	82.386	ENSGACG00000014955	-	97	82.386	Gasterosteus_aculeatus
ENSSDUG00000011608	pcbp3	85	84.649	ENSGAGG00000006956	-	93	84.649	Gopherus_agassizii
ENSSDUG00000011608	pcbp3	88	81.100	ENSGAGG00000000271	-	100	81.100	Gopherus_agassizii
ENSSDUG00000011608	pcbp3	99	97.305	ENSHBUG00000010697	pcbp3	95	97.305	Haplochromis_burtoni
ENSSDUG00000011608	pcbp3	99	89.297	ENSHBUG00000021782	-	96	89.297	Haplochromis_burtoni
ENSSDUG00000011608	pcbp3	99	97.305	ENSHCOG00000017868	pcbp3	95	97.305	Hippocampus_comes
ENSSDUG00000011608	pcbp3	99	83.832	ENSHCOG00000006067	-	96	83.832	Hippocampus_comes
ENSSDUG00000011608	pcbp3	99	93.433	ENSIPUG00000006238	pcbp3	97	93.433	Ictalurus_punctatus
ENSSDUG00000011608	pcbp3	99	86.269	ENSKMAG00000018530	-	97	84.592	Kryptolebias_marmoratus
ENSSDUG00000011608	pcbp3	99	97.015	ENSKMAG00000003046	pcbp3	95	97.015	Kryptolebias_marmoratus
ENSSDUG00000011608	pcbp3	99	90.606	ENSLBEG00000006201	pcbp3	95	90.606	Labrus_bergylta
ENSSDUG00000011608	pcbp3	99	78.550	ENSLBEG00000006542	-	96	79.154	Labrus_bergylta
ENSSDUG00000011608	pcbp3	96	86.286	ENSLACG00000010386	pcbp3	73	86.286	Latimeria_chalumnae
ENSSDUG00000011608	pcbp3	96	77.937	ENSLACG00000010804	zgc:110045	73	77.937	Latimeria_chalumnae
ENSSDUG00000011608	pcbp3	96	83.742	ENSLOCG00000005058	zgc:110045	79	83.742	Lepisosteus_oculatus
ENSSDUG00000011608	pcbp3	97	93.293	ENSLOCG00000009369	pcbp3	95	93.293	Lepisosteus_oculatus
ENSSDUG00000011608	pcbp3	99	92.355	ENSMAMG00000022336	pcbp3	93	92.355	Mastacembelus_armatus
ENSSDUG00000011608	pcbp3	99	87.879	ENSMAMG00000011620	-	97	87.879	Mastacembelus_armatus
ENSSDUG00000011608	pcbp3	99	96.726	ENSMZEG00005008993	pcbp3	99	96.726	Maylandia_zebra
ENSSDUG00000011608	pcbp3	99	88.344	ENSMZEG00005014882	-	95	88.450	Maylandia_zebra
ENSSDUG00000011608	pcbp3	97	78.035	ENSMGAG00000001883	-	95	78.035	Meleagris_gallopavo
ENSSDUG00000011608	pcbp3	96	78.125	ENSMGAG00000006794	-	74	78.125	Meleagris_gallopavo
ENSSDUG00000011608	pcbp3	99	89.297	ENSMMOG00000005216	-	96	89.297	Mola_mola
ENSSDUG00000011608	pcbp3	99	88.131	ENSMMOG00000000730	pcbp3	88	88.131	Mola_mola
ENSSDUG00000011608	pcbp3	77	85.780	ENSMODG00000027884	-	95	85.780	Monodelphis_domestica
ENSSDUG00000011608	pcbp3	99	98.792	ENSMALG00000000691	pcbp3	96	98.792	Monopterus_albus
ENSSDUG00000011608	pcbp3	97	79.651	ENSMPUG00000001779	-	87	79.651	Mustela_putorius_furo
ENSSDUG00000011608	pcbp3	99	99.080	ENSNBRG00000016409	-	95	99.080	Neolamprologus_brichardi
ENSSDUG00000011608	pcbp3	99	90.504	ENSNBRG00000016714	-	97	90.504	Neolamprologus_brichardi
ENSSDUG00000011608	pcbp3	96	89.086	ENSOPRG00000003431	-	99	89.086	Ochotona_princeps
ENSSDUG00000011608	pcbp3	99	92.068	ENSONIG00000012122	-	98	92.068	Oreochromis_niloticus
ENSSDUG00000011608	pcbp3	99	87.164	ENSONIG00000004611	-	97	87.164	Oreochromis_niloticus
ENSSDUG00000011608	pcbp3	97	86.239	ENSOCUG00000002696	-	86	86.239	Oryctolagus_cuniculus
ENSSDUG00000011608	pcbp3	99	87.164	ENSORLG00000022739	-	97	87.164	Oryzias_latipes
ENSSDUG00000011608	pcbp3	99	89.851	ENSORLG00000000059	pcbp3	100	89.851	Oryzias_latipes
ENSSDUG00000011608	pcbp3	99	89.851	ENSORLG00020012671	pcbp3	97	89.851	Oryzias_latipes_hni
ENSSDUG00000011608	pcbp3	99	88.991	ENSORLG00020006124	-	96	88.991	Oryzias_latipes_hni
ENSSDUG00000011608	pcbp3	99	89.851	ENSORLG00015000429	pcbp3	97	89.851	Oryzias_latipes_hsok
ENSSDUG00000011608	pcbp3	99	87.164	ENSORLG00015008051	-	95	87.164	Oryzias_latipes_hsok
ENSSDUG00000011608	pcbp3	92	91.089	ENSOMEG00000020811	pcbp3	96	91.089	Oryzias_melastigma
ENSSDUG00000011608	pcbp3	99	88.991	ENSOMEG00000020162	-	96	88.991	Oryzias_melastigma
ENSSDUG00000011608	pcbp3	97	80.682	ENSOGAG00000008044	-	96	80.682	Otolemur_garnettii
ENSSDUG00000011608	pcbp3	99	88.450	ENSPKIG00000019329	pcbp3	97	88.450	Paramormyrops_kingsleyae
ENSSDUG00000011608	pcbp3	78	82.673	ENSPKIG00000020913	-	91	82.673	Paramormyrops_kingsleyae
ENSSDUG00000011608	pcbp3	97	75.219	ENSPSIG00000014970	-	95	75.802	Pelodiscus_sinensis
ENSSDUG00000011608	pcbp3	74	84.898	ENSPSIG00000008350	-	67	84.898	Pelodiscus_sinensis
ENSSDUG00000011608	pcbp3	99	95.575	ENSPMGG00000022383	pcbp3	97	95.575	Periophthalmus_magnuspinnatus
ENSSDUG00000011608	pcbp3	72	85.106	ENSPMAG00000004637	-	97	85.106	Petromyzon_marinus
ENSSDUG00000011608	pcbp3	98	67.267	ENSPMAG00000004551	pcbp3	89	67.267	Petromyzon_marinus
ENSSDUG00000011608	pcbp3	97	92.988	ENSPCIG00000028092	-	95	92.988	Phascolarctos_cinereus
ENSSDUG00000011608	pcbp3	98	87.087	ENSPLAG00000004074	-	89	87.087	Poecilia_latipinna
ENSSDUG00000011608	pcbp3	99	92.754	ENSPLAG00000011449	pcbp3	88	92.754	Poecilia_latipinna
ENSSDUG00000011608	pcbp3	99	97.872	ENSPMEG00000021239	pcbp3	97	95.614	Poecilia_mexicana
ENSSDUG00000011608	pcbp3	99	89.877	ENSPMEG00000006653	-	96	88.889	Poecilia_mexicana
ENSSDUG00000011608	pcbp3	99	90.000	ENSPREG00000015736	pcbp3	99	90.000	Poecilia_reticulata
ENSSDUG00000011608	pcbp3	99	89.297	ENSPREG00000020585	-	96	89.297	Poecilia_reticulata
ENSSDUG00000011608	pcbp3	99	89.583	ENSPNYG00000012326	pcbp3	96	89.583	Pundamilia_nyererei
ENSSDUG00000011608	pcbp3	99	89.297	ENSPNYG00000013205	-	96	89.297	Pundamilia_nyererei
ENSSDUG00000011608	pcbp3	99	87.761	ENSPNAG00000015104	pcbp3	97	87.761	Pygocentrus_nattereri
ENSSDUG00000011608	pcbp3	99	92.239	ENSPNAG00000008541	-	95	92.239	Pygocentrus_nattereri
ENSSDUG00000011608	pcbp3	97	86.280	ENSRNOG00000001245	Pcbp3	95	86.280	Rattus_norvegicus
ENSSDUG00000011608	pcbp3	97	79.552	ENSRBIG00000028177	-	96	79.552	Rhinopithecus_bieti
ENSSDUG00000011608	pcbp3	97	82.571	ENSSHAG00000007890	-	95	82.029	Sarcophilus_harrisii
ENSSDUG00000011608	pcbp3	99	94.311	ENSSFOG00015010205	pcbp3	100	94.311	Scleropages_formosus
ENSSDUG00000011608	pcbp3	99	92.814	ENSSFOG00015014706	pcbp3	95	92.814	Scleropages_formosus
ENSSDUG00000011608	pcbp3	97	78.528	ENSSFOG00015007118	-	93	78.528	Scleropages_formosus
ENSSDUG00000011608	pcbp3	99	92.073	ENSSMAG00000011929	pcbp3	98	92.073	Scophthalmus_maximus
ENSSDUG00000011608	pcbp3	99	87.651	ENSSMAG00000003135	-	97	87.651	Scophthalmus_maximus
ENSSDUG00000011608	pcbp3	100	100.000	ENSSLDG00000008518	pcbp3	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000011608	pcbp3	99	87.761	ENSSLDG00000020161	-	95	87.761	Seriola_lalandi_dorsalis
ENSSDUG00000011608	pcbp3	96	79.360	ENSSPUG00000013214	-	91	85.172	Sphenodon_punctatus
ENSSDUG00000011608	pcbp3	99	85.843	ENSSPAG00000023341	-	95	85.843	Stegastes_partitus
ENSSDUG00000011608	pcbp3	89	86.184	ENSSPAG00000004190	-	96	86.184	Stegastes_partitus
ENSSDUG00000011608	pcbp3	97	79.769	ENSTGUG00000003316	-	95	79.769	Taeniopygia_guttata
ENSSDUG00000011608	pcbp3	97	80.488	ENSTGUG00000008158	-	95	80.488	Taeniopygia_guttata
ENSSDUG00000011608	pcbp3	98	84.000	ENSTRUG00000006280	-	96	84.000	Takifugu_rubripes
ENSSDUG00000011608	pcbp3	99	92.216	ENSTRUG00000013604	pcbp3	99	88.889	Takifugu_rubripes
ENSSDUG00000011608	pcbp3	97	86.667	ENSTTRG00000015075	-	96	86.667	Tursiops_truncatus
ENSSDUG00000011608	pcbp3	97	80.925	ENSXETG00000011483	pcbp1	95	80.925	Xenopus_tropicalis
ENSSDUG00000011608	pcbp3	92	78.834	ENSXETG00000010491	pcbp2	72	78.834	Xenopus_tropicalis
ENSSDUG00000011608	pcbp3	99	95.614	ENSXCOG00000020481	pcbp3	97	95.614	Xiphophorus_couchianus
ENSSDUG00000011608	pcbp3	99	89.970	ENSXMAG00000028711	-	97	90.881	Xiphophorus_maculatus
ENSSDUG00000011608	pcbp3	99	97.313	ENSXMAG00000008175	pcbp3	95	97.313	Xiphophorus_maculatus