EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000011654 (Gene tree)
Gene ID: 111229026
Gene Symbol: gfi1aa
Alias: gfi1.1|gfi1a|zgc:113277
Full Name: zinc finger protein Gfi-1-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 4217 bases
Position: chrBDQW01000226.1:2898215-2902431
Accession: 111229026
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000015976	zf-C2H2	PF00096.26	1.9e-23	1	5
ENSSDUP00000015976	zf-C2H2	PF00096.26	1.9e-23	2	5
ENSSDUP00000015976	zf-C2H2	PF00096.26	1.9e-23	3	5
ENSSDUP00000015976	zf-C2H2	PF00096.26	1.9e-23	4	5
ENSSDUP00000015976	zf-C2H2	PF00096.26	1.9e-23	5	5
ENSSDUP00000015976	zf-met	PF12874.7	2.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000016266	-	1738	XM_022755176	ENSSDUP00000015976	402 (aa)	XP_022610897	UPI000BBE5B80

Gene Model

Click here to download ENSSDUG00000011654's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000011654's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000011654	gfi1aa	53	31.274	ENSSDUG00000009421	-	85	45.455
ENSSDUG00000011654	gfi1aa	53	33.508	ENSSDUG00000010305	-	62	33.508
ENSSDUG00000011654	gfi1aa	53	43.860	ENSSDUG00000008943	-	94	44.375
ENSSDUG00000011654	gfi1aa	73	42.857	ENSSDUG00000004835	-	90	44.025
ENSSDUG00000011654	gfi1aa	50	40.476	ENSSDUG00000020595	-	93	42.384
ENSSDUG00000011654	gfi1aa	63	44.444	ENSSDUG00000011170	znf236	53	44.444
ENSSDUG00000011654	gfi1aa	53	45.000	ENSSDUG00000009439	-	94	45.000
ENSSDUG00000011654	gfi1aa	54	40.146	ENSSDUG00000016734	-	60	40.146
ENSSDUG00000011654	gfi1aa	65	47.619	ENSSDUG00000015204	-	80	47.619
ENSSDUG00000011654	gfi1aa	60	36.441	ENSSDUG00000018060	snai2	77	37.719
ENSSDUG00000011654	gfi1aa	51	41.071	ENSSDUG00000013904	-	68	44.860
ENSSDUG00000011654	gfi1aa	53	37.671	ENSSDUG00000000946	-	96	43.919
ENSSDUG00000011654	gfi1aa	53	44.643	ENSSDUG00000007336	-	95	44.643
ENSSDUG00000011654	gfi1aa	52	47.205	ENSSDUG00000009601	-	95	46.250
ENSSDUG00000011654	gfi1aa	100	61.538	ENSSDUG00000022410	gfi1ab	100	61.538
ENSSDUG00000011654	gfi1aa	59	41.912	ENSSDUG00000019932	ZNF319	86	41.912

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000011654	gfi1aa	100	90.299	ENSAPOG00000005043	gfi1aa	100	90.299	Acanthochromis_polyacanthus
ENSSDUG00000011654	gfi1aa	100	84.328	ENSACIG00000021378	gfi1aa	100	84.328	Amphilophus_citrinellus
ENSSDUG00000011654	gfi1aa	100	89.552	ENSAOCG00000022957	gfi1aa	100	89.552	Amphiprion_ocellaris
ENSSDUG00000011654	gfi1aa	100	89.801	ENSAPEG00000014539	gfi1aa	100	89.801	Amphiprion_percula
ENSSDUG00000011654	gfi1aa	100	85.821	ENSATEG00000019026	gfi1aa	99	89.046	Anabas_testudineus
ENSSDUG00000011654	gfi1aa	100	86.070	ENSACLG00000008641	gfi1aa	100	86.070	Astatotilapia_calliptera
ENSSDUG00000011654	gfi1aa	100	63.210	ENSDARG00000020746	gfi1aa	100	62.592	Danio_rerio
ENSSDUG00000011654	gfi1aa	100	83.333	ENSHBUG00000007389	gfi1aa	100	83.333	Haplochromis_burtoni
ENSSDUG00000011654	gfi1aa	100	77.861	ENSKMAG00000002148	gfi1aa	100	77.861	Kryptolebias_marmoratus
ENSSDUG00000011654	gfi1aa	100	82.090	ENSLBEG00000006603	gfi1aa	100	82.090	Labrus_bergylta
ENSSDUG00000011654	gfi1aa	100	82.090	ENSMAMG00000004896	gfi1aa	100	81.841	Mastacembelus_armatus
ENSSDUG00000011654	gfi1aa	100	86.070	ENSMZEG00005004578	gfi1aa	100	86.070	Maylandia_zebra
ENSSDUG00000011654	gfi1aa	83	80.743	ENSMMOG00000006167	gfi1aa	99	80.743	Mola_mola
ENSSDUG00000011654	gfi1aa	100	85.821	ENSNBRG00000002673	gfi1aa	100	85.821	Neolamprologus_brichardi
ENSSDUG00000011654	gfi1aa	100	83.333	ENSPNYG00000002189	gfi1aa	100	83.333	Pundamilia_nyererei
ENSSDUG00000011654	gfi1aa	100	84.767	ENSSMAG00000006797	gfi1aa	100	85.258	Scophthalmus_maximus
ENSSDUG00000011654	gfi1aa	100	93.548	ENSSLDG00000016512	gfi1aa	100	93.548	Seriola_lalandi_dorsalis
ENSSDUG00000011654	gfi1aa	86	88.372	ENSSPAG00000000927	gfi1aa	94	88.372	Stegastes_partitus
ENSSDUG00000011654	gfi1aa	100	80.397	ENSTRUG00000004744	gfi1aa	100	80.397	Takifugu_rubripes