EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000011851 (Gene tree)
Gene ID: 111230590
Gene Symbol: rab42a
Alias: wu:fk59e12|zgc:73061
Full Name: ras-related protein Rab-39B-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 2474 bases
Position: chrBDQW01000273.1:2224678-2227151
Accession: 111230590
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000016235	MMR_HSR1	PF01926.23	5.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000016536	-	657	XM_022757375	ENSSDUP00000016235	218 (aa)	XP_022613096	UPI000BBF174B

Gene Model

Click here to download ENSSDUG00000011851's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000011851's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000011851	rab42a	52	30.702	ENSSDUG00000014258	RAP2B	90	30.709
ENSSDUG00000011851	rab42a	76	41.818	ENSSDUG00000005960	rab18b	80	41.818
ENSSDUG00000011851	rab42a	76	38.235	ENSSDUG00000005037	-	79	38.235
ENSSDUG00000011851	rab42a	74	34.940	ENSSDUG00000008011	-	79	34.940
ENSSDUG00000011851	rab42a	69	44.079	ENSSDUG00000001791	rab33ba	62	44.079
ENSSDUG00000011851	rab42a	72	38.217	ENSSDUG00000013496	-	75	38.217
ENSSDUG00000011851	rab42a	93	39.216	ENSSDUG00000002580	rab11a	94	39.216
ENSSDUG00000011851	rab42a	78	32.370	ENSSDUG00000016760	rab34b	54	32.370
ENSSDUG00000011851	rab42a	75	35.976	ENSSDUG00000009835	rab5aa	75	35.976
ENSSDUG00000011851	rab42a	100	55.046	ENSSDUG00000014091	-	100	55.046
ENSSDUG00000011851	rab42a	75	30.120	ENSSDUG00000014082	si:cabz01085950.1	82	30.120
ENSSDUG00000011851	rab42a	87	46.316	ENSSDUG00000013724	rab2a	89	46.316
ENSSDUG00000011851	rab42a	67	42.763	ENSSDUG00000019885	-	62	42.763
ENSSDUG00000011851	rab42a	85	31.088	ENSSDUG00000004119	rab36	63	31.088
ENSSDUG00000011851	rab42a	72	33.544	ENSSDUG00000023508	rab23	74	33.987
ENSSDUG00000011851	rab42a	97	33.175	ENSSDUG00000021882	rab6ba	94	33.175
ENSSDUG00000011851	rab42a	90	30.846	ENSSDUG00000010942	rab34a	75	30.846
ENSSDUG00000011851	rab42a	52	30.973	ENSSDUG00000017824	-	87	30.952
ENSSDUG00000011851	rab42a	73	41.875	ENSSDUG00000004633	RAB15	75	41.875
ENSSDUG00000011851	rab42a	75	43.293	ENSSDUG00000004950	rab35b	80	43.293
ENSSDUG00000011851	rab42a	69	33.775	ENSSDUG00000019086	hrasb	85	32.927
ENSSDUG00000011851	rab42a	77	32.738	ENSSDUG00000006618	RAB17	73	32.738
ENSSDUG00000011851	rab42a	79	43.023	ENSSDUG00000016888	rab1ab	88	37.198
ENSSDUG00000011851	rab42a	72	38.217	ENSSDUG00000018970	RAB6B	73	38.217
ENSSDUG00000011851	rab42a	87	31.937	ENSSDUG00000016858	-	96	31.937
ENSSDUG00000011851	rab42a	75	35.366	ENSSDUG00000017131	rab22a	84	35.366
ENSSDUG00000011851	rab42a	79	42.775	ENSSDUG00000004445	zgc:171927	80	42.775
ENSSDUG00000011851	rab42a	82	36.702	ENSSDUG00000008151	zgc:101559	80	36.702
ENSSDUG00000011851	rab42a	84	41.530	ENSSDUG00000013558	rab11bb	83	41.530
ENSSDUG00000011851	rab42a	85	32.796	ENSSDUG00000009122	rheb	94	32.796
ENSSDUG00000011851	rab42a	80	42.857	ENSSDUG00000005719	si:dkey-16l2.16	82	42.857
ENSSDUG00000011851	rab42a	76	37.059	ENSSDUG00000003386	rab9a	83	37.059
ENSSDUG00000011851	rab42a	74	44.099	ENSSDUG00000006260	rab25b	82	44.099
ENSSDUG00000011851	rab42a	96	38.967	ENSSDUG00000005627	rab15	96	38.967
ENSSDUG00000011851	rab42a	75	35.119	ENSSDUG00000006543	RAB29	84	35.119
ENSSDUG00000011851	rab42a	75	31.928	ENSSDUG00000014765	rabl2	71	31.928
ENSSDUG00000011851	rab42a	78	42.012	ENSSDUG00000006307	-	84	42.012
ENSSDUG00000011851	rab42a	72	38.217	ENSSDUG00000009251	rab6bb	75	38.217
ENSSDUG00000011851	rab42a	72	38.994	ENSSDUG00000019738	si:dkey-13a21.4	78	38.994
ENSSDUG00000011851	rab42a	78	41.279	ENSSDUG00000008505	rab12	70	41.279
ENSSDUG00000011851	rab42a	76	36.145	ENSSDUG00000023163	rras2	81	36.145
ENSSDUG00000011851	rab42a	75	37.195	ENSSDUG00000023008	rab5c	74	37.195
ENSSDUG00000011851	rab42a	77	31.737	ENSSDUG00000007311	rhebl1	88	31.737
ENSSDUG00000011851	rab42a	84	42.077	ENSSDUG00000002965	rab11ba	83	42.458
ENSSDUG00000011851	rab42a	82	42.135	ENSSDUG00000022535	RAB1A	87	42.135
ENSSDUG00000011851	rab42a	97	38.967	ENSSDUG00000009735	rab25a	94	38.967
ENSSDUG00000011851	rab42a	73	32.919	ENSSDUG00000017779	kras	98	31.414
ENSSDUG00000011851	rab42a	72	40.625	ENSSDUG00000013968	rab33a	67	40.625
ENSSDUG00000011851	rab42a	85	30.151	ENSSDUG00000015078	rasl11a	75	30.151
ENSSDUG00000011851	rab42a	98	38.318	ENSSDUG00000004551	rab14	97	38.318
ENSSDUG00000011851	rab42a	76	40.000	ENSSDUG00000003823	rab18a	80	40.000
ENSSDUG00000011851	rab42a	84	39.674	ENSSDUG00000004698	rab1ba	91	39.674
ENSSDUG00000011851	rab42a	84	41.530	ENSSDUG00000002934	-	83	41.530
ENSSDUG00000011851	rab42a	70	37.013	ENSSDUG00000010675	si:ch73-116o1.2	75	36.747
ENSSDUG00000011851	rab42a	73	44.375	ENSSDUG00000013325	rab30	78	44.375
ENSSDUG00000011851	rab42a	75	38.323	ENSSDUG00000007575	rab9b	81	38.323
ENSSDUG00000011851	rab42a	98	38.785	ENSSDUG00000013050	-	97	38.785
ENSSDUG00000011851	rab42a	98	40.000	ENSSDUG00000006278	rab11al	95	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000011851	rab42a	100	96.789	ENSAPOG00000009188	rab42a	100	96.789	Acanthochromis_polyacanthus
ENSSDUG00000011851	rab42a	100	97.706	ENSACIG00000003102	rab42a	100	97.706	Amphilophus_citrinellus
ENSSDUG00000011851	rab42a	100	96.330	ENSAOCG00000012921	rab42a	83	96.330	Amphiprion_ocellaris
ENSSDUG00000011851	rab42a	100	96.330	ENSAPEG00000007713	rab42a	83	96.330	Amphiprion_percula
ENSSDUG00000011851	rab42a	100	94.037	ENSATEG00000009052	rab42a	100	94.037	Anabas_testudineus
ENSSDUG00000011851	rab42a	100	96.330	ENSACLG00000007514	rab42a	100	96.330	Astatotilapia_calliptera
ENSSDUG00000011851	rab42a	100	90.367	ENSAMXG00000032729	rab42a	100	90.367	Astyanax_mexicanus
ENSSDUG00000011851	rab42a	100	94.037	ENSCSEG00000010582	rab42a	100	94.037	Cynoglossus_semilaevis
ENSSDUG00000011851	rab42a	100	47.032	ENSDARG00000102580	CU571310.1	99	47.032	Danio_rerio
ENSSDUG00000011851	rab42a	100	91.743	ENSDARG00000034215	rab42a	100	91.743	Danio_rerio
ENSSDUG00000011851	rab42a	100	89.908	ENSELUG00000010345	rab42a	100	89.908	Esox_lucius
ENSSDUG00000011851	rab42a	100	96.330	ENSFHEG00000013106	rab42a	100	96.330	Fundulus_heteroclitus
ENSSDUG00000011851	rab42a	100	96.330	ENSGAFG00000002141	rab42a	100	96.330	Gambusia_affinis
ENSSDUG00000011851	rab42a	100	96.330	ENSHBUG00000015126	rab42a	82	96.330	Haplochromis_burtoni
ENSSDUG00000011851	rab42a	100	87.615	ENSIPUG00000011376	rab42a	100	87.615	Ictalurus_punctatus
ENSSDUG00000011851	rab42a	100	95.413	ENSKMAG00000007267	rab42a	100	95.413	Kryptolebias_marmoratus
ENSSDUG00000011851	rab42a	100	96.789	ENSLBEG00000001193	rab42a	100	96.789	Labrus_bergylta
ENSSDUG00000011851	rab42a	100	64.220	ENSLACG00000012755	-	100	64.220	Latimeria_chalumnae
ENSSDUG00000011851	rab42a	100	83.486	ENSLOCG00000003453	rab42a	100	83.486	Lepisosteus_oculatus
ENSSDUG00000011851	rab42a	100	50.685	ENSLOCG00000015825	-	99	50.685	Lepisosteus_oculatus
ENSSDUG00000011851	rab42a	100	98.165	ENSMAMG00000002296	rab42a	100	98.165	Mastacembelus_armatus
ENSSDUG00000011851	rab42a	100	96.330	ENSMZEG00005012460	rab42a	82	96.330	Maylandia_zebra
ENSSDUG00000011851	rab42a	100	93.578	ENSMMOG00000014358	rab42a	100	93.578	Mola_mola
ENSSDUG00000011851	rab42a	100	96.789	ENSNBRG00000021487	rab42a	82	96.789	Neolamprologus_brichardi
ENSSDUG00000011851	rab42a	100	96.789	ENSORLG00000022335	rab42a	100	96.789	Oryzias_latipes
ENSSDUG00000011851	rab42a	100	96.789	ENSORLG00020013895	rab42a	100	96.789	Oryzias_latipes_hni
ENSSDUG00000011851	rab42a	100	96.789	ENSORLG00015004273	rab42a	100	96.789	Oryzias_latipes_hsok
ENSSDUG00000011851	rab42a	100	96.789	ENSOMEG00000020418	rab42a	100	96.789	Oryzias_melastigma
ENSSDUG00000011851	rab42a	99	46.544	ENSPKIG00000015234	-	99	46.544	Paramormyrops_kingsleyae
ENSSDUG00000011851	rab42a	100	78.082	ENSPKIG00000021215	-	100	78.082	Paramormyrops_kingsleyae
ENSSDUG00000011851	rab42a	90	97.462	ENSPMGG00000024112	rab42a	90	97.462	Periophthalmus_magnuspinnatus
ENSSDUG00000011851	rab42a	100	95.413	ENSPFOG00000004838	rab42a	82	95.413	Poecilia_formosa
ENSSDUG00000011851	rab42a	100	95.872	ENSPLAG00000005628	rab42a	100	95.872	Poecilia_latipinna
ENSSDUG00000011851	rab42a	100	95.413	ENSPMEG00000019497	rab42a	100	95.413	Poecilia_mexicana
ENSSDUG00000011851	rab42a	100	96.330	ENSPREG00000013962	rab42a	100	96.330	Poecilia_reticulata
ENSSDUG00000011851	rab42a	100	96.330	ENSPNYG00000010325	rab42a	82	96.330	Pundamilia_nyererei
ENSSDUG00000011851	rab42a	100	89.908	ENSPNAG00000016567	rab42a	100	89.908	Pygocentrus_nattereri
ENSSDUG00000011851	rab42a	100	84.404	ENSSFOG00015020732	rab42a	100	84.404	Scleropages_formosus
ENSSDUG00000011851	rab42a	100	46.119	ENSSFOG00015016000	-	97	46.119	Scleropages_formosus
ENSSDUG00000011851	rab42a	100	96.330	ENSSMAG00000020311	rab42a	100	96.330	Scophthalmus_maximus
ENSSDUG00000011851	rab42a	100	100.000	ENSSLDG00000020354	rab42a	100	100.000	Seriola_lalandi_dorsalis
ENSSDUG00000011851	rab42a	100	98.165	ENSSPAG00000016167	rab42a	100	98.165	Stegastes_partitus
ENSSDUG00000011851	rab42a	100	97.248	ENSTRUG00000010224	rab42a	100	97.248	Takifugu_rubripes
ENSSDUG00000011851	rab42a	100	96.789	ENSXCOG00000003428	rab42a	100	96.789	Xiphophorus_couchianus
ENSSDUG00000011851	rab42a	100	96.789	ENSXMAG00000028376	rab42a	100	96.789	Xiphophorus_maculatus