EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000011930 (Gene tree)
Gene ID: 111226683
Gene Symbol: polr1d
Alias: im:7162148|zgc:136449
Full Name: DNA-directed RNA polymerases I and III subunit RPAC2-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 5025 bases
Position: chrBDQW01000161.1:4856994-4862018
Accession: 111226683
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000016333	RNA_pol_L_2	PF13656.6	4.6e-28	1	1
ENSSDUP00000016333	RNA_pol_L	PF01193.24	4.8e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000016636	-	1694	XM_022751959	ENSSDUP00000016333	114 (aa)	XP_022607680	UPI000BBE697E

Gene Model

Click here to download ENSSDUG00000011930's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03020	RNA polymerase	KEGG
sdu04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000011930's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000011930	polr1d	74	38.095	ENSSDUG00000018490	polr2j	69	38.095

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000011930	polr1d	94	67.290	ENSG00000186184	POLR1D	92	67.290	Homo_sapiens
ENSSDUG00000011930	polr1d	89	85.294	ENSAPOG00000021882	polr1d	96	85.294	Acanthochromis_polyacanthus
ENSSDUG00000011930	polr1d	94	68.224	ENSAMEG00000019095	POLR1D	86	68.224	Ailuropoda_melanoleuca
ENSSDUG00000011930	polr1d	100	90.435	ENSACIG00000013328	polr1d	100	90.435	Amphilophus_citrinellus
ENSSDUG00000011930	polr1d	100	84.211	ENSAOCG00000018500	polr1d	100	84.211	Amphiprion_ocellaris
ENSSDUG00000011930	polr1d	100	85.088	ENSAPEG00000009489	polr1d	100	85.088	Amphiprion_percula
ENSSDUG00000011930	polr1d	100	93.860	ENSATEG00000019322	polr1d	100	93.860	Anabas_testudineus
ENSSDUG00000011930	polr1d	97	63.964	ENSACAG00000015753	POLR1D	96	63.964	Anolis_carolinensis
ENSSDUG00000011930	polr1d	94	67.290	ENSANAG00000024486	POLR1D	80	67.290	Aotus_nancymaae
ENSSDUG00000011930	polr1d	100	92.982	ENSACLG00000023805	polr1d	100	92.982	Astatotilapia_calliptera
ENSSDUG00000011930	polr1d	99	74.336	ENSAMXG00000036118	polr1d	98	74.336	Astyanax_mexicanus
ENSSDUG00000011930	polr1d	94	66.355	ENSBTAG00000008642	POLR1D	80	66.355	Bos_taurus
ENSSDUG00000011930	polr1d	94	66.355	ENSBTAG00000033252	-	80	66.355	Bos_taurus
ENSSDUG00000011930	polr1d	70	35.000	WBGene00010230	rpac-19	56	35.000	Caenorhabditis_elegans
ENSSDUG00000011930	polr1d	94	68.224	ENSCJAG00000044669	POLR1D	80	68.224	Callithrix_jacchus
ENSSDUG00000011930	polr1d	94	68.224	ENSCAFG00000006755	POLR1D	80	68.224	Canis_familiaris
ENSSDUG00000011930	polr1d	94	67.290	ENSCHIG00000021910	POLR1D	80	67.290	Capra_hircus
ENSSDUG00000011930	polr1d	93	68.868	ENSTSYG00000026817	-	80	68.868	Carlito_syrichta
ENSSDUG00000011930	polr1d	93	59.259	ENSTSYG00000034852	-	89	59.259	Carlito_syrichta
ENSSDUG00000011930	polr1d	57	56.923	ENSCAPG00000006058	-	66	56.923	Cavia_aperea
ENSSDUG00000011930	polr1d	58	56.061	ENSCPOG00000030450	-	67	56.061	Cavia_porcellus
ENSSDUG00000011930	polr1d	94	68.224	ENSCCAG00000021349	-	80	68.224	Cebus_capucinus
ENSSDUG00000011930	polr1d	94	50.467	ENSCCAG00000020191	-	78	50.467	Cebus_capucinus
ENSSDUG00000011930	polr1d	93	57.547	ENSCATG00000022900	-	79	57.547	Cercocebus_atys
ENSSDUG00000011930	polr1d	94	67.290	ENSCATG00000030710	-	80	67.290	Cercocebus_atys
ENSSDUG00000011930	polr1d	94	67.290	ENSCLAG00000017623	POLR1D	86	67.290	Chinchilla_lanigera
ENSSDUG00000011930	polr1d	89	77.228	ENSCPBG00000004719	POLR1D	100	77.228	Chrysemys_picta_bellii
ENSSDUG00000011930	polr1d	93	66.981	ENSCANG00000037694	-	80	66.981	Colobus_angolensis_palliatus
ENSSDUG00000011930	polr1d	94	67.290	ENSCANG00000028632	-	80	67.290	Colobus_angolensis_palliatus
ENSSDUG00000011930	polr1d	94	66.355	ENSCGRG00001021251	Polr1d	80	66.355	Cricetulus_griseus_chok1gshd
ENSSDUG00000011930	polr1d	94	66.355	ENSCGRG00000011639	Polr1d	80	66.355	Cricetulus_griseus_crigri
ENSSDUG00000011930	polr1d	93	91.509	ENSCSEG00000018268	polr1d	100	88.034	Cynoglossus_semilaevis
ENSSDUG00000011930	polr1d	100	82.456	ENSCVAG00000018527	polr1d	100	82.456	Cyprinodon_variegatus
ENSSDUG00000011930	polr1d	91	75.962	ENSDARG00000037570	polr1d	93	75.962	Danio_rerio
ENSSDUG00000011930	polr1d	94	66.355	ENSDNOG00000043676	-	80	66.355	Dasypus_novemcinctus
ENSSDUG00000011930	polr1d	94	65.421	ENSDNOG00000046247	-	80	65.421	Dasypus_novemcinctus
ENSSDUG00000011930	polr1d	94	66.355	ENSDORG00000029155	Polr1d	80	66.355	Dipodomys_ordii
ENSSDUG00000011930	polr1d	75	49.412	FBgn0086447	l(2)37Cg	80	49.412	Drosophila_melanogaster
ENSSDUG00000011930	polr1d	94	69.159	ENSETEG00000012797	POLR1D	86	69.159	Echinops_telfairi
ENSSDUG00000011930	polr1d	81	65.217	ENSEBUG00000011748	polr1d	64	65.217	Eptatretus_burgeri
ENSSDUG00000011930	polr1d	94	68.224	ENSEASG00005022487	POLR1D	83	68.224	Equus_asinus_asinus
ENSSDUG00000011930	polr1d	93	68.868	ENSEEUG00000013144	POLR1D	85	68.868	Erinaceus_europaeus
ENSSDUG00000011930	polr1d	97	80.357	ENSELUG00000005105	rpac2	98	80.357	Esox_lucius
ENSSDUG00000011930	polr1d	94	68.224	ENSFCAG00000030162	POLR1D	80	68.224	Felis_catus
ENSSDUG00000011930	polr1d	88	72.000	ENSFALG00000011463	POLR1D	99	72.000	Ficedula_albicollis
ENSSDUG00000011930	polr1d	94	66.355	ENSFDAG00000004463	POLR1D	80	66.355	Fukomys_damarensis
ENSSDUG00000011930	polr1d	100	85.088	ENSFHEG00000015410	polr1d	99	85.088	Fundulus_heteroclitus
ENSSDUG00000011930	polr1d	59	61.194	ENSGALG00000007470	POLR1D	66	61.194	Gallus_gallus
ENSSDUG00000011930	polr1d	100	86.842	ENSGAFG00000001693	polr1d	100	86.842	Gambusia_affinis
ENSSDUG00000011930	polr1d	96	91.743	ENSGACG00000018585	polr1d	92	91.743	Gasterosteus_aculeatus
ENSSDUG00000011930	polr1d	100	74.561	ENSGAGG00000008503	POLR1D	100	74.561	Gopherus_agassizii
ENSSDUG00000011930	polr1d	94	67.290	ENSGGOG00000004235	POLR1D	80	67.290	Gorilla_gorilla
ENSSDUG00000011930	polr1d	100	92.982	ENSHBUG00000002111	polr1d	100	92.982	Haplochromis_burtoni
ENSSDUG00000011930	polr1d	94	65.421	ENSHGLG00000003202	POLR1D	80	65.421	Heterocephalus_glaber_female
ENSSDUG00000011930	polr1d	94	65.421	ENSHGLG00100009393	POLR1D	80	65.421	Heterocephalus_glaber_male
ENSSDUG00000011930	polr1d	100	80.702	ENSHCOG00000003258	polr1d	100	80.702	Hippocampus_comes
ENSSDUG00000011930	polr1d	100	77.391	ENSIPUG00000014810	polr1d	100	77.391	Ictalurus_punctatus
ENSSDUG00000011930	polr1d	94	67.290	ENSSTOG00000013877	POLR1D	80	67.290	Ictidomys_tridecemlineatus
ENSSDUG00000011930	polr1d	94	66.355	ENSJJAG00000022671	-	89	66.355	Jaculus_jaculus
ENSSDUG00000011930	polr1d	94	52.336	ENSJJAG00000021667	-	63	52.336	Jaculus_jaculus
ENSSDUG00000011930	polr1d	100	85.088	ENSKMAG00000015256	polr1d	100	85.088	Kryptolebias_marmoratus
ENSSDUG00000011930	polr1d	100	92.982	ENSLBEG00000015919	polr1d	100	92.982	Labrus_bergylta
ENSSDUG00000011930	polr1d	94	67.593	ENSLACG00000006810	POLR1D	90	67.593	Latimeria_chalumnae
ENSSDUG00000011930	polr1d	62	80.282	ENSLOCG00000014976	polr1d	96	80.282	Lepisosteus_oculatus
ENSSDUG00000011930	polr1d	94	67.290	ENSLAFG00000032290	POLR1D	80	67.290	Loxodonta_africana
ENSSDUG00000011930	polr1d	94	67.290	ENSMFAG00000045264	POLR1D	83	67.290	Macaca_fascicularis
ENSSDUG00000011930	polr1d	94	67.290	ENSMMUG00000020386	POLR1D	92	67.290	Macaca_mulatta
ENSSDUG00000011930	polr1d	71	62.963	ENSMMUG00000041570	-	73	62.963	Macaca_mulatta
ENSSDUG00000011930	polr1d	94	67.290	ENSMNEG00000008630	-	80	67.290	Macaca_nemestrina
ENSSDUG00000011930	polr1d	93	53.774	ENSMNEG00000038120	-	78	53.774	Macaca_nemestrina
ENSSDUG00000011930	polr1d	94	67.290	ENSMLEG00000041048	-	80	67.290	Mandrillus_leucophaeus
ENSSDUG00000011930	polr1d	93	58.491	ENSMLEG00000032251	-	79	58.491	Mandrillus_leucophaeus
ENSSDUG00000011930	polr1d	89	91.176	ENSMAMG00000014834	polr1d	95	91.176	Mastacembelus_armatus
ENSSDUG00000011930	polr1d	89	89.216	ENSMZEG00005006638	polr1d	90	89.216	Maylandia_zebra
ENSSDUG00000011930	polr1d	81	75.000	ENSMGAG00000005322	POLR1D	84	75.000	Meleagris_gallopavo
ENSSDUG00000011930	polr1d	94	66.355	ENSMAUG00000001946	Polr1d	80	66.355	Mesocricetus_auratus
ENSSDUG00000011930	polr1d	98	50.893	ENSMICG00000007349	-	84	50.893	Microcebus_murinus
ENSSDUG00000011930	polr1d	94	66.355	ENSMICG00000016883	-	80	66.355	Microcebus_murinus
ENSSDUG00000011930	polr1d	94	65.421	ENSMOCG00000021288	Polr1d	80	65.421	Microtus_ochrogaster
ENSSDUG00000011930	polr1d	100	89.474	ENSMMOG00000009605	polr1d	100	89.474	Mola_mola
ENSSDUG00000011930	polr1d	100	71.053	ENSMODG00000023881	POLR1D	100	71.053	Monodelphis_domestica
ENSSDUG00000011930	polr1d	100	87.719	ENSMALG00000010652	polr1d	100	87.719	Monopterus_albus
ENSSDUG00000011930	polr1d	91	66.346	MGP_CAROLIEiJ_G0028034	Polr1d	78	66.346	Mus_caroli
ENSSDUG00000011930	polr1d	98	62.500	ENSMUSG00000029642	Polr1d	84	62.500	Mus_musculus
ENSSDUG00000011930	polr1d	94	64.486	MGP_PahariEiJ_G0024600	Polr1d	80	64.486	Mus_pahari
ENSSDUG00000011930	polr1d	98	63.393	MGP_SPRETEiJ_G0029032	Polr1d	84	63.393	Mus_spretus
ENSSDUG00000011930	polr1d	94	61.682	ENSMLUG00000004118	-	80	61.682	Myotis_lucifugus
ENSSDUG00000011930	polr1d	94	67.290	ENSMLUG00000027169	-	80	67.290	Myotis_lucifugus
ENSSDUG00000011930	polr1d	95	66.667	ENSNGAG00000006014	Polr1d	93	66.667	Nannospalax_galili
ENSSDUG00000011930	polr1d	100	92.982	ENSNBRG00000020327	polr1d	100	92.982	Neolamprologus_brichardi
ENSSDUG00000011930	polr1d	94	67.290	ENSNLEG00000000358	POLR1D	80	67.290	Nomascus_leucogenys
ENSSDUG00000011930	polr1d	93	56.604	ENSODEG00000014801	-	77	56.604	Octodon_degus
ENSSDUG00000011930	polr1d	93	67.925	ENSODEG00000005294	-	80	67.925	Octodon_degus
ENSSDUG00000011930	polr1d	93	75.472	ENSOANG00000008708	-	98	75.472	Ornithorhynchus_anatinus
ENSSDUG00000011930	polr1d	94	67.290	ENSOCUG00000015706	POLR1D	66	67.290	Oryctolagus_cuniculus
ENSSDUG00000011930	polr1d	100	82.456	ENSORLG00000010257	polr1d	100	82.456	Oryzias_latipes
ENSSDUG00000011930	polr1d	100	82.456	ENSORLG00020000533	polr1d	77	82.456	Oryzias_latipes_hni
ENSSDUG00000011930	polr1d	100	81.579	ENSORLG00015013267	polr1d	75	81.579	Oryzias_latipes_hsok
ENSSDUG00000011930	polr1d	100	80.702	ENSOMEG00000014912	polr1d	76	80.702	Oryzias_melastigma
ENSSDUG00000011930	polr1d	98	66.071	ENSOGAG00000014601	POLR1D	84	66.071	Otolemur_garnettii
ENSSDUG00000011930	polr1d	94	67.290	ENSOARG00000017005	POLR1D	82	67.290	Ovis_aries
ENSSDUG00000011930	polr1d	94	67.290	ENSPPAG00000028138	POLR1D	80	67.290	Pan_paniscus
ENSSDUG00000011930	polr1d	94	68.224	ENSPPRG00000003381	POLR1D	80	68.224	Panthera_pardus
ENSSDUG00000011930	polr1d	94	68.224	ENSPTIG00000018137	POLR1D	80	68.224	Panthera_tigris_altaica
ENSSDUG00000011930	polr1d	94	67.290	ENSPTRG00000005734	POLR1D	80	67.290	Pan_troglodytes
ENSSDUG00000011930	polr1d	94	67.290	ENSPANG00000020259	-	80	67.290	Papio_anubis
ENSSDUG00000011930	polr1d	93	57.547	ENSPANG00000035051	-	79	57.547	Papio_anubis
ENSSDUG00000011930	polr1d	85	78.351	ENSPKIG00000021891	polr1d	98	60.163	Paramormyrops_kingsleyae
ENSSDUG00000011930	polr1d	100	71.053	ENSPSIG00000011822	POLR1D	88	71.053	Pelodiscus_sinensis
ENSSDUG00000011930	polr1d	100	72.807	ENSPMGG00000012998	POLR1D	84	72.807	Periophthalmus_magnuspinnatus
ENSSDUG00000011930	polr1d	100	80.702	ENSPMGG00000010359	polr1d	99	80.702	Periophthalmus_magnuspinnatus
ENSSDUG00000011930	polr1d	94	66.355	ENSPEMG00000006336	-	82	66.355	Peromyscus_maniculatus_bairdii
ENSSDUG00000011930	polr1d	97	57.658	ENSPMAG00000004228	polr1d	92	57.658	Petromyzon_marinus
ENSSDUG00000011930	polr1d	100	70.175	ENSPCIG00000001673	POLR1D	100	70.175	Phascolarctos_cinereus
ENSSDUG00000011930	polr1d	100	87.719	ENSPFOG00000023343	polr1d	100	87.719	Poecilia_formosa
ENSSDUG00000011930	polr1d	100	87.719	ENSPLAG00000009675	polr1d	100	87.719	Poecilia_latipinna
ENSSDUG00000011930	polr1d	100	87.719	ENSPMEG00000004628	polr1d	100	87.719	Poecilia_mexicana
ENSSDUG00000011930	polr1d	100	87.719	ENSPREG00000022032	polr1d	100	87.719	Poecilia_reticulata
ENSSDUG00000011930	polr1d	94	65.421	ENSPCOG00000028175	POLR1D	80	65.421	Propithecus_coquereli
ENSSDUG00000011930	polr1d	100	92.982	ENSPNYG00000000107	polr1d	100	92.982	Pundamilia_nyererei
ENSSDUG00000011930	polr1d	96	72.477	ENSPNAG00000001512	polr1d	100	69.748	Pygocentrus_nattereri
ENSSDUG00000011930	polr1d	94	67.290	ENSRBIG00000036378	-	80	67.290	Rhinopithecus_bieti
ENSSDUG00000011930	polr1d	93	65.094	ENSRBIG00000000336	-	80	65.094	Rhinopithecus_bieti
ENSSDUG00000011930	polr1d	93	66.038	ENSRROG00000026751	-	80	66.038	Rhinopithecus_roxellana
ENSSDUG00000011930	polr1d	94	67.290	ENSRROG00000042232	-	80	67.290	Rhinopithecus_roxellana
ENSSDUG00000011930	polr1d	79	47.778	YNL113W	RPC19	70	44.444	Saccharomyces_cerevisiae
ENSSDUG00000011930	polr1d	87	66.667	ENSSBOG00000030146	-	73	66.667	Saimiri_boliviensis_boliviensis
ENSSDUG00000011930	polr1d	94	67.290	ENSSBOG00000028482	-	80	67.290	Saimiri_boliviensis_boliviensis
ENSSDUG00000011930	polr1d	97	68.468	ENSSHAG00000001190	POLR1D	86	68.468	Sarcophilus_harrisii
ENSSDUG00000011930	polr1d	96	75.455	ENSSFOG00015011375	polr1d	96	75.455	Scleropages_formosus
ENSSDUG00000011930	polr1d	100	96.491	ENSSMAG00000011861	polr1d	100	96.491	Scophthalmus_maximus
ENSSDUG00000011930	polr1d	99	89.474	ENSSLDG00000023871	polr1d	97	89.474	Seriola_lalandi_dorsalis
ENSSDUG00000011930	polr1d	94	68.224	ENSSARG00000007840	POLR1D	80	68.224	Sorex_araneus
ENSSDUG00000011930	polr1d	92	73.333	ENSSPUG00000005786	POLR1D	95	70.270	Sphenodon_punctatus
ENSSDUG00000011930	polr1d	100	91.228	ENSSPAG00000011764	polr1d	100	91.228	Stegastes_partitus
ENSSDUG00000011930	polr1d	94	66.355	ENSSSCG00000009310	POLR1D	80	66.355	Sus_scrofa
ENSSDUG00000011930	polr1d	84	71.875	ENSTGUG00000005450	POLR1D	100	71.875	Taeniopygia_guttata
ENSSDUG00000011930	polr1d	100	78.070	ENSTRUG00000019741	polr1d	100	78.070	Takifugu_rubripes
ENSSDUG00000011930	polr1d	98	65.179	ENSTBEG00000007006	POLR1D	90	65.179	Tupaia_belangeri
ENSSDUG00000011930	polr1d	94	68.224	ENSUAMG00000011413	POLR1D	80	68.224	Ursus_americanus
ENSSDUG00000011930	polr1d	94	68.224	ENSUMAG00000016968	POLR1D	84	68.224	Ursus_maritimus
ENSSDUG00000011930	polr1d	94	68.224	ENSVVUG00000009216	POLR1D	80	68.224	Vulpes_vulpes
ENSSDUG00000011930	polr1d	89	86.139	ENSXCOG00000011731	polr1d	78	86.139	Xiphophorus_couchianus
ENSSDUG00000011930	polr1d	89	85.149	ENSXMAG00000017538	polr1d	78	85.149	Xiphophorus_maculatus