EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000011949 (Gene tree)
Gene ID
111232241
Gene Symbol
rpa1
Alias
wu:fi14b08|zgc:55337|zgc:77092
Full Name
replication protein A1
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Plus strand
Length
33083 bases
Position
chrBDQW01000330.1:1361133-1394215
Accession
111232241
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000016419tRNA_anti-codonPF01336.252.8e-1211
ENSSDUP00000016384tRNA_anti-codonPF01336.253.1e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000016722-1743-ENSSDUP00000016419580 (aa)--
ENSSDUT00000016688-3923XM_022759678ENSSDUP00000016384600 (aa)XP_022615399UPI000BBE1365
Gene Model
Click here to download ENSSDUG00000011949's gene model file
Pathways
Pathway IDPathway NameSource
sdu03030DNA replicationKEGG
sdu03420Nucleotide excision repairKEGG
sdu03430Mismatch repairKEGG
sdu03440Homologous recombinationKEGG
sdu03460Fanconi anemia pathwayKEGG
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000011949rpa19272.622ENSSDUG00000016358RPA19072.374
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000011949rpa110088.833ENSAPOG00000011658rpa110088.833Acanthochromis_polyacanthus
ENSSDUG00000011949rpa19469.457ENSAPOG00000019409RPA18469.457Acanthochromis_polyacanthus
ENSSDUG00000011949rpa19665.599ENSAMEG00000007706RPA19665.599Ailuropoda_melanoleuca
ENSSDUG00000011949rpa19680.069ENSACIG00000007277rpa19980.069Amphilophus_citrinellus
ENSSDUG00000011949rpa19562.521ENSACIG00000012881RPA19962.521Amphilophus_citrinellus
ENSSDUG00000011949rpa19959.380ENSAOCG00000009003RPA19959.690Amphiprion_ocellaris
ENSSDUG00000011949rpa110088.833ENSAOCG00000023376rpa110088.833Amphiprion_ocellaris
ENSSDUG00000011949rpa110089.167ENSAPEG00000008634rpa110089.167Amphiprion_percula
ENSSDUG00000011949rpa19670.721ENSAPEG00000019132RPA18770.721Amphiprion_percula
ENSSDUG00000011949rpa19589.912ENSATEG00000022024rpa110089.912Anabas_testudineus
ENSSDUG00000011949rpa19960.742ENSATEG00000006443RPA19960.742Anabas_testudineus
ENSSDUG00000011949rpa19654.436ENSAPLG00000012442RPA19955.188Anas_platyrhynchos
ENSSDUG00000011949rpa19959.370ENSACAG00000014490RPA19859.867Anolis_carolinensis
ENSSDUG00000011949rpa19667.145ENSANAG00000023456RPA19767.145Aotus_nancymaae
ENSSDUG00000011949rpa19962.362ENSACLG00000005223RPA19962.362Astatotilapia_calliptera
ENSSDUG00000011949rpa19488.829ENSACLG00000006640rpa19988.829Astatotilapia_calliptera
ENSSDUG00000011949rpa19979.000ENSAMXG00000008418rpa19981.183Astyanax_mexicanus
ENSSDUG00000011949rpa19964.157ENSBTAG00000009711RPA19964.157Bos_taurus
ENSSDUG00000011949rpa18531.128WBGene00017546rpa-17631.128Caenorhabditis_elegans
ENSSDUG00000011949rpa19962.704ENSCJAG00000001848RPA19963.132Callithrix_jacchus
ENSSDUG00000011949rpa19964.812ENSCAFG00000019249RPA19965.139Canis_familiaris
ENSSDUG00000011949rpa19964.812ENSCAFG00020009847RPA19965.139Canis_lupus_dingo
ENSSDUG00000011949rpa19964.321ENSCHIG00000026308RPA19964.484Capra_hircus
ENSSDUG00000011949rpa19963.355ENSTSYG00000003482-9963.355Carlito_syrichta
ENSSDUG00000011949rpa19963.785ENSCPOG00000000035RPA19963.785Cavia_porcellus
ENSSDUG00000011949rpa19953.420ENSCCAG00000010981RPA19953.834Cebus_capucinus
ENSSDUG00000011949rpa19963.458ENSCLAG00000005185-9963.458Chinchilla_lanigera
ENSSDUG00000011949rpa19960.131ENSCLAG00000015045-9960.131Chinchilla_lanigera
ENSSDUG00000011949rpa19954.160ENSCSAG00000013833RPA19954.323Chlorocebus_sabaeus
ENSSDUG00000011949rpa17571.330ENSCHOG00000009454-9971.330Choloepus_hoffmanni
ENSSDUG00000011949rpa19663.435ENSCHOG00000013540-9963.435Choloepus_hoffmanni
ENSSDUG00000011949rpa19963.339ENSCPBG00000020377RPA19964.211Chrysemys_picta_bellii
ENSSDUG00000011949rpa19943.636ENSCING00000023482-9943.636Ciona_intestinalis
ENSSDUG00000011949rpa19667.384ENSCANG00000030911RPA19767.384Colobus_angolensis_palliatus
ENSSDUG00000011949rpa19963.458ENSCGRG00001008197Rpa19963.622Cricetulus_griseus_chok1gshd
ENSSDUG00000011949rpa17869.978ENSCGRG00000000582Rpa19965.217Cricetulus_griseus_crigri
ENSSDUG00000011949rpa110080.725ENSCSEG00000013066rpa110080.725Cynoglossus_semilaevis
ENSSDUG00000011949rpa19954.735ENSCSEG00000012726RPA19956.014Cynoglossus_semilaevis
ENSSDUG00000011949rpa19071.190ENSCVAG00000013446-9654.348Cyprinodon_variegatus
ENSSDUG00000011949rpa110084.653ENSCVAG00000019431rpa110084.653Cyprinodon_variegatus
ENSSDUG00000011949rpa19976.667ENSDARG00000003938rpa19976.667Danio_rerio
ENSSDUG00000011949rpa19765.261ENSDNOG00000017218RPA19665.261Dasypus_novemcinctus
ENSSDUG00000011949rpa19964.157ENSDORG00000006199Rpa19964.321Dipodomys_ordii
ENSSDUG00000011949rpa19941.463FBgn0010173RpA-709942.182Drosophila_melanogaster
ENSSDUG00000011949rpa18272.165ENSETEG00000017608RPA18272.165Echinops_telfairi
ENSSDUG00000011949rpa19567.446ENSEASG00005009372RPA19967.269Equus_asinus_asinus
ENSSDUG00000011949rpa19964.321ENSECAG00000023886RPA19964.484Equus_caballus
ENSSDUG00000011949rpa17271.599ENSEEUG00000002186-6871.599Erinaceus_europaeus
ENSSDUG00000011949rpa18864.729ENSELUG00000006136RPA19964.729Esox_lucius
ENSSDUG00000011949rpa19980.858ENSELUG00000021071rpa19980.858Esox_lucius
ENSSDUG00000011949rpa19963.844ENSFCAG00000006306RPA19963.844Felis_catus
ENSSDUG00000011949rpa19962.520ENSFALG00000006575RPA19962.520Ficedula_albicollis
ENSSDUG00000011949rpa19964.706ENSFDAG00000007720RPA19964.706Fukomys_damarensis
ENSSDUG00000011949rpa110084.463ENSFHEG00000003580rpa110084.463Fundulus_heteroclitus
ENSSDUG00000011949rpa19978.356ENSGMOG00000010382rpa19978.356Gadus_morhua
ENSSDUG00000011949rpa19961.513ENSGALG00000003072RPA19961.513Gallus_gallus
ENSSDUG00000011949rpa110084.692ENSGAFG00000012916rpa110084.692Gambusia_affinis
ENSSDUG00000011949rpa19958.574ENSGAFG00000020953RPA19958.931Gambusia_affinis
ENSSDUG00000011949rpa110084.743ENSGACG00000010856rpa110084.743Gasterosteus_aculeatus
ENSSDUG00000011949rpa19963.011ENSGAGG00000013611RPA19963.011Gopherus_agassizii
ENSSDUG00000011949rpa19964.167ENSGGOG00000014186RPA19964.167Gorilla_gorilla
ENSSDUG00000011949rpa19660.000ENSHBUG00000009348RPA19960.000Haplochromis_burtoni
ENSSDUG00000011949rpa19990.833ENSHBUG00000017773rpa19990.833Haplochromis_burtoni
ENSSDUG00000011949rpa19964.216ENSHGLG00000008846RPA19964.379Heterocephalus_glaber_female
ENSSDUG00000011949rpa19959.967ENSHGLG00100000799-9959.967Heterocephalus_glaber_male
ENSSDUG00000011949rpa19964.216ENSHGLG00100017755-9964.379Heterocephalus_glaber_male
ENSSDUG00000011949rpa19954.235ENSHGLG00100002005-9954.486Heterocephalus_glaber_male
ENSSDUG00000011949rpa19944.186ENSHCOG00000000351RPA19844.132Hippocampus_comes
ENSSDUG00000011949rpa110075.530ENSHCOG00000001401rpa110075.530Hippocampus_comes
ENSSDUG00000011949rpa19977.980ENSIPUG00000004400rpa19977.980Ictalurus_punctatus
ENSSDUG00000011949rpa19660.201ENSSTOG00000022475RPA19960.201Ictidomys_tridecemlineatus
ENSSDUG00000011949rpa19665.372ENSJJAG00000000876Rpa19865.372Jaculus_jaculus
ENSSDUG00000011949rpa110081.669ENSKMAG00000005605rpa110081.803Kryptolebias_marmoratus
ENSSDUG00000011949rpa19960.826ENSKMAG00000000234RPA19960.826Kryptolebias_marmoratus
ENSSDUG00000011949rpa19869.074ENSLBEG00000002281RPA18469.074Labrus_bergylta
ENSSDUG00000011949rpa19985.099ENSLBEG00000021604rpa19985.099Labrus_bergylta
ENSSDUG00000011949rpa18163.136ENSLACG00000007210RPA19961.963Latimeria_chalumnae
ENSSDUG00000011949rpa19972.607ENSLOCG00000006397rpa19972.893Lepisosteus_oculatus
ENSSDUG00000011949rpa19962.419ENSLAFG00000015354RPA19962.419Loxodonta_africana
ENSSDUG00000011949rpa18063.232ENSMFAG00000036138-9863.232Macaca_fascicularis
ENSSDUG00000011949rpa19959.375ENSMMUG00000002442-9959.375Macaca_mulatta
ENSSDUG00000011949rpa19963.980ENSMMUG00000011604-9963.980Macaca_mulatta
ENSSDUG00000011949rpa19962.908ENSMNEG00000031632-9962.908Macaca_nemestrina
ENSSDUG00000011949rpa19658.855ENSMNEG00000029837-9765.939Macaca_nemestrina
ENSSDUG00000011949rpa19661.409ENSMLEG00000038768-9861.409Mandrillus_leucophaeus
ENSSDUG00000011949rpa19871.395ENSMAMG00000020097RPA19170.203Mastacembelus_armatus
ENSSDUG00000011949rpa110091.000ENSMAMG00000017993rpa110091.000Mastacembelus_armatus
ENSSDUG00000011949rpa19990.500ENSMZEG00005007551rpa19990.500Maylandia_zebra
ENSSDUG00000011949rpa19962.362ENSMZEG00005024731RPA19962.362Maylandia_zebra
ENSSDUG00000011949rpa19960.992ENSMGAG00000005315RPA19860.992Meleagris_gallopavo
ENSSDUG00000011949rpa19664.696ENSMAUG00000010474Rpa19865.085Mesocricetus_auratus
ENSSDUG00000011949rpa19964.262ENSMICG00000012867RPA19964.262Microcebus_murinus
ENSSDUG00000011949rpa19963.875ENSMOCG00000013019Rpa19963.875Microtus_ochrogaster
ENSSDUG00000011949rpa110085.167ENSMMOG00000014292rpa110087.241Mola_mola
ENSSDUG00000011949rpa19862.709ENSMMOG00000010868RPA19862.709Mola_mola
ENSSDUG00000011949rpa19963.295ENSMODG00000010549RPA19963.295Monodelphis_domestica
ENSSDUG00000011949rpa19969.820ENSMALG00000001208RPA18769.820Monopterus_albus
ENSSDUG00000011949rpa110090.500ENSMALG00000011453rpa110090.500Monopterus_albus
ENSSDUG00000011949rpa19963.458MGP_CAROLIEiJ_G0016734Rpa19963.562Mus_caroli
ENSSDUG00000011949rpa19962.298ENSMUSG00000000751Rpa19962.399Mus_musculus
ENSSDUG00000011949rpa19963.415MGP_PahariEiJ_G0017871Rpa19963.518Mus_pahari
ENSSDUG00000011949rpa19962.197MGP_SPRETEiJ_G0017577Rpa19962.298Mus_spretus
ENSSDUG00000011949rpa19964.542ENSMPUG00000013119RPA19964.542Mustela_putorius_furo
ENSSDUG00000011949rpa19963.695ENSMLUG00000006113RPA19963.695Myotis_lucifugus
ENSSDUG00000011949rpa19564.966ENSNGAG00000004522Rpa19464.966Nannospalax_galili
ENSSDUG00000011949rpa19588.592ENSNBRG00000020595rpa19988.592Neolamprologus_brichardi
ENSSDUG00000011949rpa19860.535ENSNBRG00000009672RPA19760.535Neolamprologus_brichardi
ENSSDUG00000011949rpa19963.681ENSNLEG00000017149RPA19963.622Nomascus_leucogenys
ENSSDUG00000011949rpa19654.992ENSMEUG00000006714RPA19754.992Notamacropus_eugenii
ENSSDUG00000011949rpa19960.709ENSODEG00000009038RPA19763.545Octodon_degus
ENSSDUG00000011949rpa19988.562ENSONIG00000013135rpa19988.562Oreochromis_niloticus
ENSSDUG00000011949rpa19864.570ENSOANG00000010880RPA19964.570Ornithorhynchus_anatinus
ENSSDUG00000011949rpa19961.778ENSOCUG00000001504RPA19961.778Oryctolagus_cuniculus
ENSSDUG00000011949rpa19566.157ENSORLG00000003368RPA19166.157Oryzias_latipes
ENSSDUG00000011949rpa19986.455ENSORLG00000004856rpa19986.455Oryzias_latipes
ENSSDUG00000011949rpa19986.789ENSORLG00020008980rpa19986.789Oryzias_latipes_hni
ENSSDUG00000011949rpa19963.771ENSORLG00020015284RPA19763.771Oryzias_latipes_hni
ENSSDUG00000011949rpa19957.210ENSORLG00015020383RPA19957.210Oryzias_latipes_hsok
ENSSDUG00000011949rpa19986.789ENSORLG00015013982rpa19986.789Oryzias_latipes_hsok
ENSSDUG00000011949rpa17167.640ENSORLG00015005867-9367.640Oryzias_latipes_hsok
ENSSDUG00000011949rpa19460.924ENSOMEG00000011040RPA19960.924Oryzias_melastigma
ENSSDUG00000011949rpa19983.278ENSOMEG00000004704rpa19983.278Oryzias_melastigma
ENSSDUG00000011949rpa17574.176ENSOGAG00000029379-9874.176Otolemur_garnettii
ENSSDUG00000011949rpa19964.052ENSOGAG00000005581-9964.052Otolemur_garnettii
ENSSDUG00000011949rpa19964.321ENSOARG00000014479RPA19964.484Ovis_aries
ENSSDUG00000011949rpa19963.844ENSPPAG00000039680RPA19963.785Pan_paniscus
ENSSDUG00000011949rpa19963.681ENSPPRG00000011807RPA19963.681Panthera_pardus
ENSSDUG00000011949rpa19963.681ENSPTIG00000007898RPA19963.681Panthera_tigris_altaica
ENSSDUG00000011949rpa19964.007ENSPTRG00000008539RPA19963.948Pan_troglodytes
ENSSDUG00000011949rpa19963.785ENSPANG00000024592RPA19963.785Papio_anubis
ENSSDUG00000011949rpa19974.752ENSPKIG00000008053rpa19875.537Paramormyrops_kingsleyae
ENSSDUG00000011949rpa19764.310ENSPSIG00000015617RPA19864.310Pelodiscus_sinensis
ENSSDUG00000011949rpa19663.506ENSPMGG00000000543RPA19963.148Periophthalmus_magnuspinnatus
ENSSDUG00000011949rpa19687.299ENSPMGG00000011589rpa19887.299Periophthalmus_magnuspinnatus
ENSSDUG00000011949rpa19964.860ENSPEMG00000021061Rpa19964.860Peromyscus_maniculatus_bairdii
ENSSDUG00000011949rpa19962.969ENSPCIG00000019049RPA19963.132Phascolarctos_cinereus
ENSSDUG00000011949rpa110085.191ENSPFOG00000003987rpa110085.191Poecilia_formosa
ENSSDUG00000011949rpa19459.547ENSPLAG00000008844-9659.547Poecilia_latipinna
ENSSDUG00000011949rpa110085.025ENSPLAG00000004984rpa110085.025Poecilia_latipinna
ENSSDUG00000011949rpa110085.358ENSPMEG00000020602rpa110085.358Poecilia_mexicana
ENSSDUG00000011949rpa19458.937ENSPMEG00000003627-9659.223Poecilia_mexicana
ENSSDUG00000011949rpa19377.818ENSPREG00000010174rpa19577.679Poecilia_reticulata
ENSSDUG00000011949rpa19571.106ENSPREG00000010119RPA18471.106Poecilia_reticulata
ENSSDUG00000011949rpa19963.889ENSPCOG00000001799RPA19963.889Propithecus_coquereli
ENSSDUG00000011949rpa19963.192ENSPVAG00000002149RPA19963.192Pteropus_vampyrus
ENSSDUG00000011949rpa19962.205ENSPNYG00000024165RPA19962.205Pundamilia_nyererei
ENSSDUG00000011949rpa19990.833ENSPNYG00000016316rpa19990.833Pundamilia_nyererei
ENSSDUG00000011949rpa19969.916ENSPNAG00000008599rpa19672.077Pygocentrus_nattereri
ENSSDUG00000011949rpa19670.388ENSRNOG00000003123Rpa19964.368Rattus_norvegicus
ENSSDUG00000011949rpa19963.622ENSRBIG00000036587RPA19963.622Rhinopithecus_bieti
ENSSDUG00000011949rpa19958.728ENSRROG00000043278RPA19958.728Rhinopithecus_roxellana
ENSSDUG00000011949rpa19732.026YAR007CRFA19732.026Saccharomyces_cerevisiae
ENSSDUG00000011949rpa19165.302ENSSBOG00000030233RPA19765.775Saimiri_boliviensis_boliviensis
ENSSDUG00000011949rpa19962.848ENSSHAG00000007969RPA19863.666Sarcophilus_harrisii
ENSSDUG00000011949rpa19980.629ENSSFOG00015005362rpa19280.629Scleropages_formosus
ENSSDUG00000011949rpa19271.847ENSSMAG00000019746RPA19958.904Scophthalmus_maximus
ENSSDUG00000011949rpa110099.310ENSSLDG00000011806rpa110099.310Seriola_lalandi_dorsalis
ENSSDUG00000011949rpa19271.991ENSSLDG00000020784RPA18471.918Seriola_lalandi_dorsalis
ENSSDUG00000011949rpa19651.607ENSSARG00000007506RPA18772.727Sorex_araneus
ENSSDUG00000011949rpa19762.585ENSSPUG00000007223RPA19862.585Sphenodon_punctatus
ENSSDUG00000011949rpa19963.621ENSSPAG00000011165RPA19864.583Stegastes_partitus
ENSSDUG00000011949rpa110089.667ENSSPAG00000009903rpa110089.667Stegastes_partitus
ENSSDUG00000011949rpa19667.864ENSSSCG00000017822RPA19964.667Sus_scrofa
ENSSDUG00000011949rpa19961.741ENSTGUG00000005775RPA19961.741Taeniopygia_guttata
ENSSDUG00000011949rpa19369.626ENSTRUG00000000405RPA18068.778Takifugu_rubripes
ENSSDUG00000011949rpa110085.000ENSTRUG00000003616rpa110085.000Takifugu_rubripes
ENSSDUG00000011949rpa110086.438ENSTNIG00000016199rpa19986.721Tetraodon_nigroviridis
ENSSDUG00000011949rpa17571.364ENSTBEG00000002709RPA17471.364Tupaia_belangeri
ENSSDUG00000011949rpa19963.339ENSTTRG00000001169RPA19963.666Tursiops_truncatus
ENSSDUG00000011949rpa18673.077ENSUAMG00000015676RPA19573.077Ursus_americanus
ENSSDUG00000011949rpa19964.167ENSUMAG00000009328RPA19964.216Ursus_maritimus
ENSSDUG00000011949rpa19962.007ENSVPAG00000009443RPA19962.007Vicugna_pacos
ENSSDUG00000011949rpa19964.321ENSVVUG00000021715RPA19964.648Vulpes_vulpes
ENSSDUG00000011949rpa19967.045ENSXETG00000013538rpa19968.595Xenopus_tropicalis
ENSSDUG00000011949rpa19563.233ENSXCOG00000009899-9963.233Xiphophorus_couchianus
ENSSDUG00000011949rpa19384.229ENSXCOG00000010068rpa19484.229Xiphophorus_couchianus
ENSSDUG00000011949rpa110084.027ENSXMAG00000004102rpa110084.973Xiphophorus_maculatus
ENSSDUG00000011949rpa19570.880ENSXMAG00000010333RPA18270.880Xiphophorus_maculatus

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