EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000011949 (Gene tree)
Gene ID
111232241
Gene Symbol
rpa1
Alias
wu:fi14b08|zgc:55337|zgc:77092
Full Name
replication protein A1
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Plus strand
Length
33083 bases
Position
chrBDQW01000330.1:1361133-1394215
Accession
111232241
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000016419tRNA_anti-codonPF01336.252.8e-1211
ENSSDUP00000016384tRNA_anti-codonPF01336.253.1e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000016722-1743-ENSSDUP00000016419580 (aa)--
ENSSDUT00000016688-3923XM_022759678ENSSDUP00000016384600 (aa)XP_022615399UPI000BBE1365
Gene Model
Click here to download ENSSDUG00000011949's gene model file
Pathways
Pathway IDPathway NameSource
sdu03030DNA replicationKEGG
sdu03420Nucleotide excision repairKEGG
sdu03430Mismatch repairKEGG
sdu03440Homologous recombinationKEGG
sdu03460Fanconi anemia pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000011949's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000011949rpa19272.622ENSSDUG00000016358RPA19072.374
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000011949rpa110088.833ENSAPOG00000011658rpa110088.833Acanthochromis_polyacanthus
ENSSDUG00000011949rpa19469.457ENSAPOG00000019409RPA18469.457Acanthochromis_polyacanthus
ENSSDUG00000011949rpa19665.599ENSAMEG00000007706RPA19665.599Ailuropoda_melanoleuca
ENSSDUG00000011949rpa19680.069ENSACIG00000007277rpa19980.069Amphilophus_citrinellus
ENSSDUG00000011949rpa19562.521ENSACIG00000012881RPA19962.521Amphilophus_citrinellus
ENSSDUG00000011949rpa19959.380ENSAOCG00000009003RPA19959.690Amphiprion_ocellaris
ENSSDUG00000011949rpa110088.833ENSAOCG00000023376rpa110088.833Amphiprion_ocellaris
ENSSDUG00000011949rpa110089.167ENSAPEG00000008634rpa110089.167Amphiprion_percula
ENSSDUG00000011949rpa19670.721ENSAPEG00000019132RPA18770.721Amphiprion_percula
ENSSDUG00000011949rpa19589.912ENSATEG00000022024rpa110089.912Anabas_testudineus
ENSSDUG00000011949rpa19960.742ENSATEG00000006443RPA19960.742Anabas_testudineus
ENSSDUG00000011949rpa19654.436ENSAPLG00000012442RPA19955.188Anas_platyrhynchos
ENSSDUG00000011949rpa19959.370ENSACAG00000014490RPA19859.867Anolis_carolinensis
ENSSDUG00000011949rpa19667.145ENSANAG00000023456RPA19767.145Aotus_nancymaae
ENSSDUG00000011949rpa19962.362ENSACLG00000005223RPA19962.362Astatotilapia_calliptera
ENSSDUG00000011949rpa19488.829ENSACLG00000006640rpa19988.829Astatotilapia_calliptera
ENSSDUG00000011949rpa19979.000ENSAMXG00000008418rpa19981.183Astyanax_mexicanus
ENSSDUG00000011949rpa19964.157ENSBTAG00000009711RPA19964.157Bos_taurus
ENSSDUG00000011949rpa18531.128WBGene00017546rpa-17631.128Caenorhabditis_elegans
ENSSDUG00000011949rpa19962.704ENSCJAG00000001848RPA19963.132Callithrix_jacchus
ENSSDUG00000011949rpa19964.812ENSCAFG00000019249RPA19965.139Canis_familiaris
ENSSDUG00000011949rpa19964.812ENSCAFG00020009847RPA19965.139Canis_lupus_dingo
ENSSDUG00000011949rpa19964.321ENSCHIG00000026308RPA19964.484Capra_hircus
ENSSDUG00000011949rpa19963.355ENSTSYG00000003482-9963.355Carlito_syrichta
ENSSDUG00000011949rpa19963.785ENSCPOG00000000035RPA19963.785Cavia_porcellus
ENSSDUG00000011949rpa19953.420ENSCCAG00000010981RPA19953.834Cebus_capucinus
ENSSDUG00000011949rpa19963.458ENSCLAG00000005185-9963.458Chinchilla_lanigera
ENSSDUG00000011949rpa19960.131ENSCLAG00000015045-9960.131Chinchilla_lanigera
ENSSDUG00000011949rpa19954.160ENSCSAG00000013833RPA19954.323Chlorocebus_sabaeus
ENSSDUG00000011949rpa17571.330ENSCHOG00000009454-9971.330Choloepus_hoffmanni
ENSSDUG00000011949rpa19663.435ENSCHOG00000013540-9963.435Choloepus_hoffmanni
ENSSDUG00000011949rpa19963.339ENSCPBG00000020377RPA19964.211Chrysemys_picta_bellii
ENSSDUG00000011949rpa19943.636ENSCING00000023482-9943.636Ciona_intestinalis
ENSSDUG00000011949rpa19667.384ENSCANG00000030911RPA19767.384Colobus_angolensis_palliatus
ENSSDUG00000011949rpa19963.458ENSCGRG00001008197Rpa19963.622Cricetulus_griseus_chok1gshd
ENSSDUG00000011949rpa17869.978ENSCGRG00000000582Rpa19965.217Cricetulus_griseus_crigri
ENSSDUG00000011949rpa110080.725ENSCSEG00000013066rpa110080.725Cynoglossus_semilaevis
ENSSDUG00000011949rpa19954.735ENSCSEG00000012726RPA19956.014Cynoglossus_semilaevis
ENSSDUG00000011949rpa19071.190ENSCVAG00000013446-9654.348Cyprinodon_variegatus
ENSSDUG00000011949rpa110084.653ENSCVAG00000019431rpa110084.653Cyprinodon_variegatus
ENSSDUG00000011949rpa19976.667ENSDARG00000003938rpa19976.667Danio_rerio
ENSSDUG00000011949rpa19765.261ENSDNOG00000017218RPA19665.261Dasypus_novemcinctus
ENSSDUG00000011949rpa19964.157ENSDORG00000006199Rpa19964.321Dipodomys_ordii
ENSSDUG00000011949rpa19941.463FBgn0010173RpA-709942.182Drosophila_melanogaster
ENSSDUG00000011949rpa18272.165ENSETEG00000017608RPA18272.165Echinops_telfairi
ENSSDUG00000011949rpa19567.446ENSEASG00005009372RPA19967.269Equus_asinus_asinus
ENSSDUG00000011949rpa19964.321ENSECAG00000023886RPA19964.484Equus_caballus
ENSSDUG00000011949rpa17271.599ENSEEUG00000002186-6871.599Erinaceus_europaeus
ENSSDUG00000011949rpa18864.729ENSELUG00000006136RPA19964.729Esox_lucius
ENSSDUG00000011949rpa19980.858ENSELUG00000021071rpa19980.858Esox_lucius
ENSSDUG00000011949rpa19963.844ENSFCAG00000006306RPA19963.844Felis_catus
ENSSDUG00000011949rpa19962.520ENSFALG00000006575RPA19962.520Ficedula_albicollis
ENSSDUG00000011949rpa19964.706ENSFDAG00000007720RPA19964.706Fukomys_damarensis
ENSSDUG00000011949rpa110084.463ENSFHEG00000003580rpa110084.463Fundulus_heteroclitus
ENSSDUG00000011949rpa19978.356ENSGMOG00000010382rpa19978.356Gadus_morhua
ENSSDUG00000011949rpa19961.513ENSGALG00000003072RPA19961.513Gallus_gallus
ENSSDUG00000011949rpa110084.692ENSGAFG00000012916rpa110084.692Gambusia_affinis
ENSSDUG00000011949rpa19958.574ENSGAFG00000020953RPA19958.931Gambusia_affinis
ENSSDUG00000011949rpa110084.743ENSGACG00000010856rpa110084.743Gasterosteus_aculeatus
ENSSDUG00000011949rpa19963.011ENSGAGG00000013611RPA19963.011Gopherus_agassizii
ENSSDUG00000011949rpa19964.167ENSGGOG00000014186RPA19964.167Gorilla_gorilla
ENSSDUG00000011949rpa19660.000ENSHBUG00000009348RPA19960.000Haplochromis_burtoni
ENSSDUG00000011949rpa19990.833ENSHBUG00000017773rpa19990.833Haplochromis_burtoni
ENSSDUG00000011949rpa19964.216ENSHGLG00000008846RPA19964.379Heterocephalus_glaber_female
ENSSDUG00000011949rpa19959.967ENSHGLG00100000799-9959.967Heterocephalus_glaber_male
ENSSDUG00000011949rpa19964.216ENSHGLG00100017755-9964.379Heterocephalus_glaber_male
ENSSDUG00000011949rpa19954.235ENSHGLG00100002005-9954.486Heterocephalus_glaber_male
ENSSDUG00000011949rpa19944.186ENSHCOG00000000351RPA19844.132Hippocampus_comes
ENSSDUG00000011949rpa110075.530ENSHCOG00000001401rpa110075.530Hippocampus_comes
ENSSDUG00000011949rpa19977.980ENSIPUG00000004400rpa19977.980Ictalurus_punctatus
ENSSDUG00000011949rpa19660.201ENSSTOG00000022475RPA19960.201Ictidomys_tridecemlineatus
ENSSDUG00000011949rpa19665.372ENSJJAG00000000876Rpa19865.372Jaculus_jaculus
ENSSDUG00000011949rpa110081.669ENSKMAG00000005605rpa110081.803Kryptolebias_marmoratus
ENSSDUG00000011949rpa19960.826ENSKMAG00000000234RPA19960.826Kryptolebias_marmoratus
ENSSDUG00000011949rpa19869.074ENSLBEG00000002281RPA18469.074Labrus_bergylta
ENSSDUG00000011949rpa19985.099ENSLBEG00000021604rpa19985.099Labrus_bergylta
ENSSDUG00000011949rpa18163.136ENSLACG00000007210RPA19961.963Latimeria_chalumnae
ENSSDUG00000011949rpa19972.607ENSLOCG00000006397rpa19972.893Lepisosteus_oculatus
ENSSDUG00000011949rpa19962.419ENSLAFG00000015354RPA19962.419Loxodonta_africana
ENSSDUG00000011949rpa18063.232ENSMFAG00000036138-9863.232Macaca_fascicularis
ENSSDUG00000011949rpa19959.375ENSMMUG00000002442-9959.375Macaca_mulatta
ENSSDUG00000011949rpa19963.980ENSMMUG00000011604-9963.980Macaca_mulatta
ENSSDUG00000011949rpa19962.908ENSMNEG00000031632-9962.908Macaca_nemestrina
ENSSDUG00000011949rpa19658.855ENSMNEG00000029837-9765.939Macaca_nemestrina
ENSSDUG00000011949rpa19661.409ENSMLEG00000038768-9861.409Mandrillus_leucophaeus
ENSSDUG00000011949rpa19871.395ENSMAMG00000020097RPA19170.203Mastacembelus_armatus
ENSSDUG00000011949rpa110091.000ENSMAMG00000017993rpa110091.000Mastacembelus_armatus
ENSSDUG00000011949rpa19990.500ENSMZEG00005007551rpa19990.500Maylandia_zebra
ENSSDUG00000011949rpa19962.362ENSMZEG00005024731RPA19962.362Maylandia_zebra
ENSSDUG00000011949rpa19960.992ENSMGAG00000005315RPA19860.992Meleagris_gallopavo
ENSSDUG00000011949rpa19664.696ENSMAUG00000010474Rpa19865.085Mesocricetus_auratus
ENSSDUG00000011949rpa19964.262ENSMICG00000012867RPA19964.262Microcebus_murinus
ENSSDUG00000011949rpa19963.875ENSMOCG00000013019Rpa19963.875Microtus_ochrogaster
ENSSDUG00000011949rpa110085.167ENSMMOG00000014292rpa110087.241Mola_mola
ENSSDUG00000011949rpa19862.709ENSMMOG00000010868RPA19862.709Mola_mola
ENSSDUG00000011949rpa19963.295ENSMODG00000010549RPA19963.295Monodelphis_domestica
ENSSDUG00000011949rpa19969.820ENSMALG00000001208RPA18769.820Monopterus_albus
ENSSDUG00000011949rpa110090.500ENSMALG00000011453rpa110090.500Monopterus_albus
ENSSDUG00000011949rpa19963.458MGP_CAROLIEiJ_G0016734Rpa19963.562Mus_caroli
ENSSDUG00000011949rpa19962.298ENSMUSG00000000751Rpa19962.399Mus_musculus
ENSSDUG00000011949rpa19963.415MGP_PahariEiJ_G0017871Rpa19963.518Mus_pahari
ENSSDUG00000011949rpa19962.197MGP_SPRETEiJ_G0017577Rpa19962.298Mus_spretus
ENSSDUG00000011949rpa19964.542ENSMPUG00000013119RPA19964.542Mustela_putorius_furo
ENSSDUG00000011949rpa19963.695ENSMLUG00000006113RPA19963.695Myotis_lucifugus
ENSSDUG00000011949rpa19564.966ENSNGAG00000004522Rpa19464.966Nannospalax_galili
ENSSDUG00000011949rpa19588.592ENSNBRG00000020595rpa19988.592Neolamprologus_brichardi
ENSSDUG00000011949rpa19860.535ENSNBRG00000009672RPA19760.535Neolamprologus_brichardi
ENSSDUG00000011949rpa19963.681ENSNLEG00000017149RPA19963.622Nomascus_leucogenys
ENSSDUG00000011949rpa19654.992ENSMEUG00000006714RPA19754.992Notamacropus_eugenii
ENSSDUG00000011949rpa19960.709ENSODEG00000009038RPA19763.545Octodon_degus
ENSSDUG00000011949rpa19988.562ENSONIG00000013135rpa19988.562Oreochromis_niloticus
ENSSDUG00000011949rpa19864.570ENSOANG00000010880RPA19964.570Ornithorhynchus_anatinus
ENSSDUG00000011949rpa19961.778ENSOCUG00000001504RPA19961.778Oryctolagus_cuniculus
ENSSDUG00000011949rpa19566.157ENSORLG00000003368RPA19166.157Oryzias_latipes
ENSSDUG00000011949rpa19986.455ENSORLG00000004856rpa19986.455Oryzias_latipes
ENSSDUG00000011949rpa19986.789ENSORLG00020008980rpa19986.789Oryzias_latipes_hni
ENSSDUG00000011949rpa19963.771ENSORLG00020015284RPA19763.771Oryzias_latipes_hni
ENSSDUG00000011949rpa19957.210ENSORLG00015020383RPA19957.210Oryzias_latipes_hsok
ENSSDUG00000011949rpa19986.789ENSORLG00015013982rpa19986.789Oryzias_latipes_hsok
ENSSDUG00000011949rpa17167.640ENSORLG00015005867-9367.640Oryzias_latipes_hsok
ENSSDUG00000011949rpa19460.924ENSOMEG00000011040RPA19960.924Oryzias_melastigma
ENSSDUG00000011949rpa19983.278ENSOMEG00000004704rpa19983.278Oryzias_melastigma
ENSSDUG00000011949rpa17574.176ENSOGAG00000029379-9874.176Otolemur_garnettii
ENSSDUG00000011949rpa19964.052ENSOGAG00000005581-9964.052Otolemur_garnettii
ENSSDUG00000011949rpa19964.321ENSOARG00000014479RPA19964.484Ovis_aries
ENSSDUG00000011949rpa19963.844ENSPPAG00000039680RPA19963.785Pan_paniscus
ENSSDUG00000011949rpa19963.681ENSPPRG00000011807RPA19963.681Panthera_pardus
ENSSDUG00000011949rpa19963.681ENSPTIG00000007898RPA19963.681Panthera_tigris_altaica
ENSSDUG00000011949rpa19964.007ENSPTRG00000008539RPA19963.948Pan_troglodytes
ENSSDUG00000011949rpa19963.785ENSPANG00000024592RPA19963.785Papio_anubis
ENSSDUG00000011949rpa19974.752ENSPKIG00000008053rpa19875.537Paramormyrops_kingsleyae
ENSSDUG00000011949rpa19764.310ENSPSIG00000015617RPA19864.310Pelodiscus_sinensis
ENSSDUG00000011949rpa19663.506ENSPMGG00000000543RPA19963.148Periophthalmus_magnuspinnatus
ENSSDUG00000011949rpa19687.299ENSPMGG00000011589rpa19887.299Periophthalmus_magnuspinnatus
ENSSDUG00000011949rpa19964.860ENSPEMG00000021061Rpa19964.860Peromyscus_maniculatus_bairdii
ENSSDUG00000011949rpa19962.969ENSPCIG00000019049RPA19963.132Phascolarctos_cinereus
ENSSDUG00000011949rpa110085.191ENSPFOG00000003987rpa110085.191Poecilia_formosa
ENSSDUG00000011949rpa19459.547ENSPLAG00000008844-9659.547Poecilia_latipinna
ENSSDUG00000011949rpa110085.025ENSPLAG00000004984rpa110085.025Poecilia_latipinna
ENSSDUG00000011949rpa110085.358ENSPMEG00000020602rpa110085.358Poecilia_mexicana
ENSSDUG00000011949rpa19458.937ENSPMEG00000003627-9659.223Poecilia_mexicana
ENSSDUG00000011949rpa19377.818ENSPREG00000010174rpa19577.679Poecilia_reticulata
ENSSDUG00000011949rpa19571.106ENSPREG00000010119RPA18471.106Poecilia_reticulata
ENSSDUG00000011949rpa19963.889ENSPCOG00000001799RPA19963.889Propithecus_coquereli
ENSSDUG00000011949rpa19963.192ENSPVAG00000002149RPA19963.192Pteropus_vampyrus
ENSSDUG00000011949rpa19962.205ENSPNYG00000024165RPA19962.205Pundamilia_nyererei
ENSSDUG00000011949rpa19990.833ENSPNYG00000016316rpa19990.833Pundamilia_nyererei
ENSSDUG00000011949rpa19969.916ENSPNAG00000008599rpa19672.077Pygocentrus_nattereri
ENSSDUG00000011949rpa19670.388ENSRNOG00000003123Rpa19964.368Rattus_norvegicus
ENSSDUG00000011949rpa19963.622ENSRBIG00000036587RPA19963.622Rhinopithecus_bieti
ENSSDUG00000011949rpa19958.728ENSRROG00000043278RPA19958.728Rhinopithecus_roxellana
ENSSDUG00000011949rpa19732.026YAR007CRFA19732.026Saccharomyces_cerevisiae
ENSSDUG00000011949rpa19165.302ENSSBOG00000030233RPA19765.775Saimiri_boliviensis_boliviensis
ENSSDUG00000011949rpa19962.848ENSSHAG00000007969RPA19863.666Sarcophilus_harrisii
ENSSDUG00000011949rpa19980.629ENSSFOG00015005362rpa19280.629Scleropages_formosus
ENSSDUG00000011949rpa19271.847ENSSMAG00000019746RPA19958.904Scophthalmus_maximus
ENSSDUG00000011949rpa110099.310ENSSLDG00000011806rpa110099.310Seriola_lalandi_dorsalis
ENSSDUG00000011949rpa19271.991ENSSLDG00000020784RPA18471.918Seriola_lalandi_dorsalis
ENSSDUG00000011949rpa19651.607ENSSARG00000007506RPA18772.727Sorex_araneus
ENSSDUG00000011949rpa19762.585ENSSPUG00000007223RPA19862.585Sphenodon_punctatus
ENSSDUG00000011949rpa19963.621ENSSPAG00000011165RPA19864.583Stegastes_partitus
ENSSDUG00000011949rpa110089.667ENSSPAG00000009903rpa110089.667Stegastes_partitus
ENSSDUG00000011949rpa19667.864ENSSSCG00000017822RPA19964.667Sus_scrofa
ENSSDUG00000011949rpa19961.741ENSTGUG00000005775RPA19961.741Taeniopygia_guttata
ENSSDUG00000011949rpa19369.626ENSTRUG00000000405RPA18068.778Takifugu_rubripes
ENSSDUG00000011949rpa110085.000ENSTRUG00000003616rpa110085.000Takifugu_rubripes
ENSSDUG00000011949rpa110086.438ENSTNIG00000016199rpa19986.721Tetraodon_nigroviridis
ENSSDUG00000011949rpa17571.364ENSTBEG00000002709RPA17471.364Tupaia_belangeri
ENSSDUG00000011949rpa19963.339ENSTTRG00000001169RPA19963.666Tursiops_truncatus
ENSSDUG00000011949rpa18673.077ENSUAMG00000015676RPA19573.077Ursus_americanus
ENSSDUG00000011949rpa19964.167ENSUMAG00000009328RPA19964.216Ursus_maritimus
ENSSDUG00000011949rpa19962.007ENSVPAG00000009443RPA19962.007Vicugna_pacos
ENSSDUG00000011949rpa19964.321ENSVVUG00000021715RPA19964.648Vulpes_vulpes
ENSSDUG00000011949rpa19967.045ENSXETG00000013538rpa19968.595Xenopus_tropicalis
ENSSDUG00000011949rpa19563.233ENSXCOG00000009899-9963.233Xiphophorus_couchianus
ENSSDUG00000011949rpa19384.229ENSXCOG00000010068rpa19484.229Xiphophorus_couchianus
ENSSDUG00000011949rpa110084.027ENSXMAG00000004102rpa110084.973Xiphophorus_maculatus
ENSSDUG00000011949rpa19570.880ENSXMAG00000010333RPA18270.880Xiphophorus_maculatus

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