EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSSDUG00000011965 (Gene tree)
Gene ID
111223194
Gene Symbol
pabpc1b
Alias
-
Full Name
polyadenylate-binding protein 1
Gene Type
protein_coding
Species
Seriola_dumerili
Status
putative
Strand
Plus strand
Length
7110 bases
Position
chrBDQW01000110.1:7344024-7351133
Accession
111223194
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSSDUP00000016433PABPPF00658.184.6e-3211
ENSSDUP00000016400PABPPF00658.184.9e-3211
ENSSDUP00000016433RRM_5PF13893.66.6e-1012
ENSSDUP00000016433RRM_5PF13893.66.6e-1022
ENSSDUP00000016400RRM_5PF13893.61e-0912
ENSSDUP00000016400RRM_5PF13893.61e-0922
ENSSDUP00000016433RRM_1PF00076.221e-9014
ENSSDUP00000016433RRM_1PF00076.221e-9024
ENSSDUP00000016433RRM_1PF00076.221e-9034
ENSSDUP00000016433RRM_1PF00076.221e-9044
ENSSDUP00000016400RRM_1PF00076.229.2e-8514
ENSSDUP00000016400RRM_1PF00076.229.2e-8524
ENSSDUP00000016400RRM_1PF00076.229.2e-8534
ENSSDUP00000016400RRM_1PF00076.229.2e-8544
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSSDUT00000016704-3054XM_022747245ENSSDUP00000016400617 (aa)XP_022602966-
ENSSDUT00000016737-1896-ENSSDUP00000016433631 (aa)--
Gene Model
Click here to download ENSSDUG00000011965's gene model file
Pathways
Pathway IDPathway NameSource
sdu03013RNA transportKEGG
sdu03015mRNA surveillance pathwayKEGG
sdu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000011965's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSSDUG00000011965pabpc1b5731.056ENSSDUG00000011734trnau1apa7032.143
ENSSDUG00000011965pabpc1b5036.986ENSSDUG00000007239celf3b6236.986
ENSSDUG00000011965pabpc1b5930.000ENSSDUG00000010922-6131.469
ENSSDUG00000011965pabpc1b5534.091ENSSDUG00000011558celf16334.091
ENSSDUG00000011965pabpc1b5737.333ENSSDUG00000013544rbm195937.333
ENSSDUG00000011965pabpc1b5936.145ENSSDUG00000000045elavl48036.145
ENSSDUG00000011965pabpc1b5830.909ENSSDUG00000006128ncl7931.496
ENSSDUG00000011965pabpc1b5937.349ENSSDUG00000008140ELAVL28537.349
ENSSDUG00000011965pabpc1b9975.397ENSSDUG00000012683pabpc48986.000
ENSSDUG00000011965pabpc1b5931.868ENSSDUG00000003453-7031.183
ENSSDUG00000011965pabpc1b5234.884ENSSDUG00000015603-5134.884
ENSSDUG00000011965pabpc1b9868.396ENSSDUG00000014743pabpc1l9968.545
ENSSDUG00000011965pabpc1b10088.558ENSSDUG00000006675pabpc1a10088.558
ENSSDUG00000011965pabpc1b5930.921ENSSDUG00000020708elavl39131.579
ENSSDUG00000011965pabpc1b5335.227ENSSDUG00000022515-5436.047
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSSDUG00000011965pabpc1b5879.592ENSG00000184388PABPC1L2B9879.592Homo_sapiens
ENSSDUG00000011965pabpc1b5879.592ENSG00000186288PABPC1L2A9879.592Homo_sapiens
ENSSDUG00000011965pabpc1b10096.057ENSAPOG00000017776pabpc1b10096.057Acanthochromis_polyacanthus
ENSSDUG00000011965pabpc1b10088.715ENSAPOG00000015105pabpc1a10088.558Acanthochromis_polyacanthus
ENSSDUG00000011965pabpc1b5979.592ENSAMEG00000019441-9879.592Ailuropoda_melanoleuca
ENSSDUG00000011965pabpc1b10091.038ENSACIG00000018366pabpc1b10090.881Amphilophus_citrinellus
ENSSDUG00000011965pabpc1b10088.715ENSACIG00000004685pabpc1a10088.558Amphilophus_citrinellus
ENSSDUG00000011965pabpc1b10087.912ENSAOCG00000011656pabpc1a10088.245Amphiprion_ocellaris
ENSSDUG00000011965pabpc1b10095.268ENSAOCG00000019839pabpc1b10095.268Amphiprion_ocellaris
ENSSDUG00000011965pabpc1b10087.912ENSAPEG00000006963pabpc1a10088.245Amphiprion_percula
ENSSDUG00000011965pabpc1b10095.268ENSAPEG00000010435pabpc1b10095.268Amphiprion_percula
ENSSDUG00000011965pabpc1b10088.226ENSATEG00000024852pabpc1a10088.558Anabas_testudineus
ENSSDUG00000011965pabpc1b10095.283ENSATEG00000012917pabpc1b10095.283Anabas_testudineus
ENSSDUG00000011965pabpc1b5879.592ENSANAG00000019429-9879.592Aotus_nancymaae
ENSSDUG00000011965pabpc1b5879.592ENSANAG00000019431-9879.592Aotus_nancymaae
ENSSDUG00000011965pabpc1b9991.304ENSACLG00000009399pabpc1a10096.078Astatotilapia_calliptera
ENSSDUG00000011965pabpc1b10094.006ENSACLG00000014335pabpc1b10094.006Astatotilapia_calliptera
ENSSDUG00000011965pabpc1b10092.756ENSAMXG00000008599pabpc1b10092.756Astyanax_mexicanus
ENSSDUG00000011965pabpc1b5978.537ENSBTAG00000050902-9878.537Bos_taurus
ENSSDUG00000011965pabpc1b6076.555ENSBTAG00000052491-9778.889Bos_taurus
ENSSDUG00000011965pabpc1b5879.592ENSCJAG00000041326-9879.592Callithrix_jacchus
ENSSDUG00000011965pabpc1b6078.537ENSCAFG00020002052-9878.537Canis_lupus_dingo
ENSSDUG00000011965pabpc1b5879.592ENSCHIG00000006283-9879.592Capra_hircus
ENSSDUG00000011965pabpc1b5879.592ENSCHIG00000011138-9879.592Capra_hircus
ENSSDUG00000011965pabpc1b5879.592ENSTSYG00000001775-9879.592Carlito_syrichta
ENSSDUG00000011965pabpc1b5979.592ENSCPOG00000009525-9879.592Cavia_porcellus
ENSSDUG00000011965pabpc1b5879.592ENSCCAG00000031524-9879.592Cebus_capucinus
ENSSDUG00000011965pabpc1b5879.592ENSCATG00000042826-9879.592Cercocebus_atys
ENSSDUG00000011965pabpc1b5879.592ENSCATG00000043125-9879.592Cercocebus_atys
ENSSDUG00000011965pabpc1b5877.551ENSCLAG00000017409-9877.551Chinchilla_lanigera
ENSSDUG00000011965pabpc1b5877.551ENSCLAG00000017412-9877.551Chinchilla_lanigera
ENSSDUG00000011965pabpc1b5979.592ENSCSAG00000000102-9879.592Chlorocebus_sabaeus
ENSSDUG00000011965pabpc1b5879.121ENSCGRG00001023387-9677.222Cricetulus_griseus_chok1gshd
ENSSDUG00000011965pabpc1b10090.221ENSCSEG00000015241-10090.221Cynoglossus_semilaevis
ENSSDUG00000011965pabpc1b9988.076ENSCSEG00000013324pabpc1a9988.413Cynoglossus_semilaevis
ENSSDUG00000011965pabpc1b10091.654ENSCVAG00000005489pabpc1b10091.654Cyprinodon_variegatus
ENSSDUG00000011965pabpc1b10088.245ENSCVAG00000021872pabpc1a10087.931Cyprinodon_variegatus
ENSSDUG00000011965pabpc1b10089.151ENSDARG00000017219pabpc1a10089.151Danio_rerio
ENSSDUG00000011965pabpc1b10093.071ENSDARG00000021140pabpc1b10093.543Danio_rerio
ENSSDUG00000011965pabpc1b5979.894ENSDNOG00000030926-9878.061Dasypus_novemcinctus
ENSSDUG00000011965pabpc1b5877.041ENSDORG00000011362-9877.041Dipodomys_ordii
ENSSDUG00000011965pabpc1b6078.155ENSEASG00005010399-9878.155Equus_asinus_asinus
ENSSDUG00000011965pabpc1b6078.155ENSECAG00000002620-9878.155Equus_caballus
ENSSDUG00000011965pabpc1b5975.000ENSEEUG00000008203-9875.000Erinaceus_europaeus
ENSSDUG00000011965pabpc1b10089.953ENSELUG00000015062-10089.953Esox_lucius
ENSSDUG00000011965pabpc1b9989.623ENSELUG00000003614pabpc1a10089.465Esox_lucius
ENSSDUG00000011965pabpc1b6059.483ENSELUG00000005389-9759.483Esox_lucius
ENSSDUG00000011965pabpc1b5879.592ENSFCAG00000039701-9879.592Felis_catus
ENSSDUG00000011965pabpc1b5979.592ENSFDAG00000005484-9879.592Fukomys_damarensis
ENSSDUG00000011965pabpc1b10092.271ENSFHEG00000008186pabpc1b10092.271Fundulus_heteroclitus
ENSSDUG00000011965pabpc1b10087.931ENSFHEG00000018979pabpc1a10088.088Fundulus_heteroclitus
ENSSDUG00000011965pabpc1b8797.052ENSGMOG00000002448-10083.489Gadus_morhua
ENSSDUG00000011965pabpc1b9987.152ENSGMOG00000013448pabpc1a9987.152Gadus_morhua
ENSSDUG00000011965pabpc1b10093.533ENSGAFG00000010193pabpc1b10093.533Gambusia_affinis
ENSSDUG00000011965pabpc1b10087.774ENSGAFG00000019750pabpc1a10087.931Gambusia_affinis
ENSSDUG00000011965pabpc1b10088.558ENSGACG00000003572pabpc1a10088.401Gasterosteus_aculeatus
ENSSDUG00000011965pabpc1b10091.277ENSGACG00000003771pabpc1b10091.589Gasterosteus_aculeatus
ENSSDUG00000011965pabpc1b5879.592ENSGGOG00000043933-9879.592Gorilla_gorilla
ENSSDUG00000011965pabpc1b5879.592ENSGGOG00000038606-9879.592Gorilla_gorilla
ENSSDUG00000011965pabpc1b9991.304ENSHBUG00000020487pabpc1a10096.078Haplochromis_burtoni
ENSSDUG00000011965pabpc1b10094.006ENSHBUG00000002075pabpc1b10094.006Haplochromis_burtoni
ENSSDUG00000011965pabpc1b5878.571ENSHGLG00000019762-9878.571Heterocephalus_glaber_female
ENSSDUG00000011965pabpc1b5878.571ENSHGLG00000019668-9878.571Heterocephalus_glaber_female
ENSSDUG00000011965pabpc1b5878.571ENSHGLG00100020854-9878.571Heterocephalus_glaber_male
ENSSDUG00000011965pabpc1b10087.912ENSHCOG00000013502pabpc1a10088.245Hippocampus_comes
ENSSDUG00000011965pabpc1b9871.569ENSHCOG00000003175pabpc1b9981.250Hippocampus_comes
ENSSDUG00000011965pabpc1b7356.716ENSIPUG00000018724-7656.716Ictalurus_punctatus
ENSSDUG00000011965pabpc1b7157.684ENSIPUG00000021244-6057.684Ictalurus_punctatus
ENSSDUG00000011965pabpc1b10086.614ENSIPUG00000008848pabpc1a10086.929Ictalurus_punctatus
ENSSDUG00000011965pabpc1b10087.441ENSIPUG00000010791-10087.441Ictalurus_punctatus
ENSSDUG00000011965pabpc1b5879.082ENSSTOG00000026028-9879.082Ictidomys_tridecemlineatus
ENSSDUG00000011965pabpc1b5879.082ENSSTOG00000022096-9879.082Ictidomys_tridecemlineatus
ENSSDUG00000011965pabpc1b5878.061ENSJJAG00000007037-9878.061Jaculus_jaculus
ENSSDUG00000011965pabpc1b10091.943ENSKMAG00000008049pabpc1b10092.271Kryptolebias_marmoratus
ENSSDUG00000011965pabpc1b10088.401ENSKMAG00000000605pabpc1a10088.088Kryptolebias_marmoratus
ENSSDUG00000011965pabpc1b10088.558ENSLBEG00000024002-10088.401Labrus_bergylta
ENSSDUG00000011965pabpc1b10093.997ENSLBEG00000026845pabpc1b10093.997Labrus_bergylta
ENSSDUG00000011965pabpc1b5978.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSSDUG00000011965pabpc1b5879.188ENSMFAG00000028878-9879.188Macaca_fascicularis
ENSSDUG00000011965pabpc1b5879.592ENSMMUG00000009740-9879.592Macaca_mulatta
ENSSDUG00000011965pabpc1b5879.592ENSMMUG00000037681-9879.592Macaca_mulatta
ENSSDUG00000011965pabpc1b5879.592ENSMMUG00000039929-9879.592Macaca_mulatta
ENSSDUG00000011965pabpc1b5879.592ENSMNEG00000037732-9879.592Macaca_nemestrina
ENSSDUG00000011965pabpc1b5879.592ENSMLEG00000027495-9879.592Mandrillus_leucophaeus
ENSSDUG00000011965pabpc1b10094.795ENSMAMG00000014610pabpc1b10094.795Mastacembelus_armatus
ENSSDUG00000011965pabpc1b10088.088ENSMAMG00000004502-10093.765Mastacembelus_armatus
ENSSDUG00000011965pabpc1b9991.304ENSMZEG00005025416pabpc1a10096.078Maylandia_zebra
ENSSDUG00000011965pabpc1b10094.006ENSMZEG00005026745pabpc1b10094.006Maylandia_zebra
ENSSDUG00000011965pabpc1b5879.592ENSMICG00000047642-9879.592Microcebus_murinus
ENSSDUG00000011965pabpc1b10088.679ENSMMOG00000018009pabpc1b10088.679Mola_mola
ENSSDUG00000011965pabpc1b10086.760ENSMMOG00000018044pabpc1a10096.078Mola_mola
ENSSDUG00000011965pabpc1b9773.798ENSMODG00000013156-9873.806Monodelphis_domestica
ENSSDUG00000011965pabpc1b9866.885ENSMODG00000015024-9866.885Monodelphis_domestica
ENSSDUG00000011965pabpc1b10087.912ENSMALG00000013020-10088.245Monopterus_albus
ENSSDUG00000011965pabpc1b10087.322ENSMALG00000006066pabpc1b10088.310Monopterus_albus
ENSSDUG00000011965pabpc1b5881.421ENSNGAG00000012688-9878.061Nannospalax_galili
ENSSDUG00000011965pabpc1b9991.304ENSNBRG00000003068-10096.078Neolamprologus_brichardi
ENSSDUG00000011965pabpc1b10093.849ENSNBRG00000013737pabpc1b10093.849Neolamprologus_brichardi
ENSSDUG00000011965pabpc1b5879.592ENSNLEG00000018128-9879.592Nomascus_leucogenys
ENSSDUG00000011965pabpc1b5879.082ENSODEG00000018540-9879.082Octodon_degus
ENSSDUG00000011965pabpc1b10094.006ENSONIG00000002717pabpc1b10094.006Oreochromis_niloticus
ENSSDUG00000011965pabpc1b10088.401ENSONIG00000006871-10088.245Oreochromis_niloticus
ENSSDUG00000011965pabpc1b5979.592ENSOCUG00000002565-9879.592Oryctolagus_cuniculus
ENSSDUG00000011965pabpc1b10085.489ENSORLG00000003008-10085.489Oryzias_latipes
ENSSDUG00000011965pabpc1b9993.824ENSORLG00000002691pabpc1a9694.595Oryzias_latipes
ENSSDUG00000011965pabpc1b10086.970ENSORLG00020022398pabpc1a10087.304Oryzias_latipes_hni
ENSSDUG00000011965pabpc1b10085.331ENSORLG00020022259-10085.331Oryzias_latipes_hni
ENSSDUG00000011965pabpc1b10086.813ENSORLG00015013633pabpc110087.147Oryzias_latipes_hsok
ENSSDUG00000011965pabpc1b10085.804ENSORLG00015010932-10085.804Oryzias_latipes_hsok
ENSSDUG00000011965pabpc1b10087.441ENSOMEG00000020219pabpc1a10087.774Oryzias_melastigma
ENSSDUG00000011965pabpc1b9584.668ENSOMEG00000013627pabpc1b10087.500Oryzias_melastigma
ENSSDUG00000011965pabpc1b5979.592ENSOGAG00000029513-9879.592Otolemur_garnettii
ENSSDUG00000011965pabpc1b5979.592ENSOGAG00000026047-9879.592Otolemur_garnettii
ENSSDUG00000011965pabpc1b5979.592ENSOARG00000005943-9879.592Ovis_aries
ENSSDUG00000011965pabpc1b5879.592ENSPPAG00000012920-9879.592Pan_paniscus
ENSSDUG00000011965pabpc1b5979.592ENSPPRG00000011804-9879.592Panthera_pardus
ENSSDUG00000011965pabpc1b5979.592ENSPPRG00000011809-9879.592Panthera_pardus
ENSSDUG00000011965pabpc1b5879.592ENSPTRG00000028252-9879.592Pan_troglodytes
ENSSDUG00000011965pabpc1b5879.592ENSPANG00000011549-9879.592Papio_anubis
ENSSDUG00000011965pabpc1b10093.701ENSPKIG00000005676pabpc1b10093.701Paramormyrops_kingsleyae
ENSSDUG00000011965pabpc1b7194.395ENSPMGG00000023134-9794.395Periophthalmus_magnuspinnatus
ENSSDUG00000011965pabpc1b7390.538ENSPMGG00000022487pabpc1a9590.538Periophthalmus_magnuspinnatus
ENSSDUG00000011965pabpc1b9871.242ENSPCIG00000016995-5571.242Phascolarctos_cinereus
ENSSDUG00000011965pabpc1b10086.615ENSPFOG00000010815pabpc1a10086.769Poecilia_formosa
ENSSDUG00000011965pabpc1b10093.218ENSPFOG00000005917pabpc1b10093.218Poecilia_formosa
ENSSDUG00000011965pabpc1b10093.533ENSPLAG00000001388pabpc1b10093.533Poecilia_latipinna
ENSSDUG00000011965pabpc1b10088.245ENSPLAG00000004114pabpc1a10088.401Poecilia_latipinna
ENSSDUG00000011965pabpc1b10088.245ENSPMEG00000001334pabpc1a10088.401Poecilia_mexicana
ENSSDUG00000011965pabpc1b10093.218ENSPMEG00000014399pabpc1b10093.218Poecilia_mexicana
ENSSDUG00000011965pabpc1b10093.533ENSPREG00000010911pabpc1b10093.533Poecilia_reticulata
ENSSDUG00000011965pabpc1b9990.847ENSPREG00000019595pabpc1a10096.078Poecilia_reticulata
ENSSDUG00000011965pabpc1b5979.592ENSPPYG00000020468-9879.592Pongo_abelii
ENSSDUG00000011965pabpc1b5979.592ENSPCAG00000005308-9879.592Procavia_capensis
ENSSDUG00000011965pabpc1b5879.082ENSPCOG00000026349-9879.082Propithecus_coquereli
ENSSDUG00000011965pabpc1b5980.000ENSPVAG00000016117-9880.000Pteropus_vampyrus
ENSSDUG00000011965pabpc1b10094.006ENSPNYG00000012578pabpc1b10094.006Pundamilia_nyererei
ENSSDUG00000011965pabpc1b10088.558ENSPNYG00000005192pabpc1a10088.401Pundamilia_nyererei
ENSSDUG00000011965pabpc1b10088.836ENSPNAG00000028408pabpc1a10088.836Pygocentrus_nattereri
ENSSDUG00000011965pabpc1b10092.598ENSPNAG00000024626pabpc1b10092.598Pygocentrus_nattereri
ENSSDUG00000011965pabpc1b5879.592ENSRBIG00000027173-9879.592Rhinopithecus_bieti
ENSSDUG00000011965pabpc1b9091.667ENSRBIG00000028738-9591.667Rhinopithecus_bieti
ENSSDUG00000011965pabpc1b5879.592ENSRROG00000017404-9879.592Rhinopithecus_roxellana
ENSSDUG00000011965pabpc1b9862.440ENSSHAG00000000511-10063.606Sarcophilus_harrisii
ENSSDUG00000011965pabpc1b6980.347ENSSFOG00015019668-9178.344Scleropages_formosus
ENSSDUG00000011965pabpc1b10089.134ENSSFOG00015006662pabpc1a10089.134Scleropages_formosus
ENSSDUG00000011965pabpc1b10093.218ENSSFOG00015002752-10093.218Scleropages_formosus
ENSSDUG00000011965pabpc1b10087.931ENSSMAG00000010803pabpc1a10087.774Scophthalmus_maximus
ENSSDUG00000011965pabpc1b10094.006ENSSMAG00000006869pabpc1b10094.006Scophthalmus_maximus
ENSSDUG00000011965pabpc1b10096.708ENSSLDG00000014156pabpc1b10096.708Seriola_lalandi_dorsalis
ENSSDUG00000011965pabpc1b10088.558ENSSLDG00000011661pabpc1a10088.558Seriola_lalandi_dorsalis
ENSSDUG00000011965pabpc1b10088.383ENSSPAG00000014453-10088.715Stegastes_partitus
ENSSDUG00000011965pabpc1b10096.209ENSSPAG00000019265pabpc1b10096.209Stegastes_partitus
ENSSDUG00000011965pabpc1b5879.592ENSSSCG00000036336-9879.592Sus_scrofa
ENSSDUG00000011965pabpc1b5879.592ENSSSCG00000032167-9879.592Sus_scrofa
ENSSDUG00000011965pabpc1b10088.976ENSTRUG00000003767-10089.134Takifugu_rubripes
ENSSDUG00000011965pabpc1b10087.931ENSTRUG00000011577-10087.931Takifugu_rubripes
ENSSDUG00000011965pabpc1b10085.008ENSTNIG00000013307pabpc1a10085.008Tetraodon_nigroviridis
ENSSDUG00000011965pabpc1b10089.028ENSTNIG00000009153pabpc1b10089.028Tetraodon_nigroviridis
ENSSDUG00000011965pabpc1b5979.592ENSTTRG00000013181-9879.592Tursiops_truncatus
ENSSDUG00000011965pabpc1b5879.592ENSUAMG00000008089-9879.592Ursus_americanus
ENSSDUG00000011965pabpc1b5879.592ENSUMAG00000003364-9879.592Ursus_maritimus
ENSSDUG00000011965pabpc1b9752.648ENSUMAG00000023926-8967.403Ursus_maritimus
ENSSDUG00000011965pabpc1b5978.500ENSVVUG00000015892-9778.500Vulpes_vulpes
ENSSDUG00000011965pabpc1b9846.050ENSXETG00000015439-10045.824Xenopus_tropicalis
ENSSDUG00000011965pabpc1b10085.849ENSXCOG00000017066pabpc1a10086.185Xiphophorus_couchianus
ENSSDUG00000011965pabpc1b10088.784ENSXCOG00000019901pabpc1b10088.942Xiphophorus_couchianus
ENSSDUG00000011965pabpc1b10093.375ENSXMAG00000003753pabpc1b10093.375Xiphophorus_maculatus
ENSSDUG00000011965pabpc1b10088.245ENSXMAG00000002555pabpc1a10088.401Xiphophorus_maculatus

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