EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000012049 (Gene tree)
Gene ID: 111234507
Gene Symbol: srrt
Alias: CHUNP6881|ars2|zgc:92060
Full Name: serrate%2C RNA effector molecule
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 9360 bases
Position: chrBDQW01000449.1:6994339-7003698
Accession: 111234507
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000016573	ARS2	PF04959.13	3.1e-91	1	1
ENSSDUP00000016539	ARS2	PF04959.13	3.5e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000016845	-	2940	XM_022762641	ENSSDUP00000016539	923 (aa)	XP_022618362	-
ENSSDUT00000016879	-	2556	-	ENSSDUP00000016573	851 (aa)	-	-

Gene Model

Click here to download ENSSDUG00000012049's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000012049's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000012049	srrt	54	55.932	ENSSDUG00000002051	-	93	56.103

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000012049	srrt	53	76.638	ENSG00000087087	SRRT	98	85.484	Homo_sapiens
ENSSDUG00000012049	srrt	95	96.032	ENSAPOG00000002304	srrt	100	96.032	Acanthochromis_polyacanthus
ENSSDUG00000012049	srrt	91	65.278	ENSAMEG00000014506	SRRT	51	75.824	Ailuropoda_melanoleuca
ENSSDUG00000012049	srrt	95	87.423	ENSACIG00000015795	srrt	90	95.186	Amphilophus_citrinellus
ENSSDUG00000012049	srrt	95	96.364	ENSAOCG00000009693	srrt	100	96.364	Amphiprion_ocellaris
ENSSDUG00000012049	srrt	92	56.747	ENSAOCG00000009189	-	52	65.745	Amphiprion_ocellaris
ENSSDUG00000012049	srrt	95	95.795	ENSAPEG00000003646	srrt	100	95.795	Amphiprion_percula
ENSSDUG00000012049	srrt	92	56.747	ENSAPEG00000020016	-	52	65.745	Amphiprion_percula
ENSSDUG00000012049	srrt	91	91.876	ENSATEG00000014425	srrt	95	91.876	Anabas_testudineus
ENSSDUG00000012049	srrt	56	63.992	ENSATEG00000003652	-	85	64.496	Anabas_testudineus
ENSSDUG00000012049	srrt	91	66.746	ENSACAG00000001014	SRRT	95	65.680	Anolis_carolinensis
ENSSDUG00000012049	srrt	53	75.484	ENSANAG00000031718	SRRT	53	74.624	Aotus_nancymaae
ENSSDUG00000012049	srrt	88	57.228	ENSACLG00000009423	-	76	66.359	Astatotilapia_calliptera
ENSSDUG00000012049	srrt	98	90.033	ENSACLG00000013156	srrt	92	90.931	Astatotilapia_calliptera
ENSSDUG00000012049	srrt	53	75.054	ENSBTAG00000001134	SRRT	53	74.194	Bos_taurus
ENSSDUG00000012049	srrt	63	45.833	WBGene00017085	E01A2.2	85	42.710	Caenorhabditis_elegans
ENSSDUG00000012049	srrt	53	75.269	ENSCJAG00000014917	SRRT	53	74.409	Callithrix_jacchus
ENSSDUG00000012049	srrt	96	65.263	ENSCAFG00000023538	SRRT	53	74.409	Canis_familiaris
ENSSDUG00000012049	srrt	98	64.598	ENSCAFG00020013358	SRRT	52	76.327	Canis_lupus_dingo
ENSSDUG00000012049	srrt	92	75.325	ENSCHIG00000010495	SRRT	85	74.459	Capra_hircus
ENSSDUG00000012049	srrt	91	62.818	ENSTSYG00000036426	SRRT	56	74.892	Carlito_syrichta
ENSSDUG00000012049	srrt	91	65.325	ENSCAPG00000013586	SRRT	89	70.464	Cavia_aperea
ENSSDUG00000012049	srrt	53	74.893	ENSCPOG00000001739	SRRT	53	74.034	Cavia_porcellus
ENSSDUG00000012049	srrt	53	75.484	ENSCCAG00000015877	SRRT	53	74.624	Cebus_capucinus
ENSSDUG00000012049	srrt	53	75.541	ENSCATG00000036306	SRRT	53	74.675	Cercocebus_atys
ENSSDUG00000012049	srrt	96	65.047	ENSCLAG00000007568	SRRT	89	70.878	Chinchilla_lanigera
ENSSDUG00000012049	srrt	53	75.484	ENSCSAG00000017996	SRRT	53	74.624	Chlorocebus_sabaeus
ENSSDUG00000012049	srrt	52	74.815	ENSCHOG00000007815	SRRT	68	71.061	Choloepus_hoffmanni
ENSSDUG00000012049	srrt	76	67.547	ENSCPBG00000011553	SRRT	84	66.300	Chrysemys_picta_bellii
ENSSDUG00000012049	srrt	100	42.042	ENSCING00000003506	-	54	51.983	Ciona_intestinalis
ENSSDUG00000012049	srrt	99	46.314	ENSCSAVG00000008394	-	81	55.429	Ciona_savignyi
ENSSDUG00000012049	srrt	53	75.758	ENSCANG00000034556	SRRT	53	74.892	Colobus_angolensis_palliatus
ENSSDUG00000012049	srrt	91	64.699	ENSCGRG00001001594	Srrt	53	74.839	Cricetulus_griseus_chok1gshd
ENSSDUG00000012049	srrt	71	81.046	ENSCGRG00000007292	Srrt	89	71.306	Cricetulus_griseus_crigri
ENSSDUG00000012049	srrt	98	74.943	ENSCSEG00000017878	srrt	95	78.723	Cynoglossus_semilaevis
ENSSDUG00000012049	srrt	92	56.127	ENSCSEG00000005233	-	82	64.557	Cynoglossus_semilaevis
ENSSDUG00000012049	srrt	90	56.171	ENSCVAG00000017344	-	52	64.828	Cyprinodon_variegatus
ENSSDUG00000012049	srrt	91	90.573	ENSCVAG00000019848	srrt	95	90.334	Cyprinodon_variegatus
ENSSDUG00000012049	srrt	95	77.347	ENSDARG00000017762	srrt	95	78.941	Danio_rerio
ENSSDUG00000012049	srrt	53	75.484	ENSDNOG00000003851	SRRT	53	74.624	Dasypus_novemcinctus
ENSSDUG00000012049	srrt	96	64.935	ENSDORG00000005584	Srrt	89	71.490	Dipodomys_ordii
ENSSDUG00000012049	srrt	97	46.447	FBgn0033062	Ars2	68	53.205	Drosophila_melanogaster
ENSSDUG00000012049	srrt	76	72.727	ENSETEG00000016175	SRRT	71	72.078	Echinops_telfairi
ENSSDUG00000012049	srrt	63	62.907	ENSEBUG00000008517	-	77	62.609	Eptatretus_burgeri
ENSSDUG00000012049	srrt	91	64.862	ENSEASG00005016956	SRRT	53	74.624	Equus_asinus_asinus
ENSSDUG00000012049	srrt	91	64.862	ENSECAG00000012292	SRRT	53	74.624	Equus_caballus
ENSSDUG00000012049	srrt	80	77.083	ENSEEUG00000009117	SRRT	57	81.081	Erinaceus_europaeus
ENSSDUG00000012049	srrt	92	59.574	ENSELUG00000021216	-	94	59.112	Esox_lucius
ENSSDUG00000012049	srrt	95	76.295	ENSELUG00000006651	srrt	50	86.214	Esox_lucius
ENSSDUG00000012049	srrt	96	65.029	ENSFCAG00000006855	SRRT	53	74.624	Felis_catus
ENSSDUG00000012049	srrt	56	51.948	ENSFALG00000007524	-	77	64.706	Ficedula_albicollis
ENSSDUG00000012049	srrt	53	72.345	ENSFDAG00000021347	SRRT	88	69.469	Fukomys_damarensis
ENSSDUG00000012049	srrt	55	57.290	ENSFHEG00000004105	-	93	57.839	Fundulus_heteroclitus
ENSSDUG00000012049	srrt	78	93.651	ENSFHEG00000002756	srrt	90	93.651	Fundulus_heteroclitus
ENSSDUG00000012049	srrt	95	75.476	ENSGMOG00000018619	srrt	93	74.909	Gadus_morhua
ENSSDUG00000012049	srrt	68	66.667	ENSGMOG00000018694	-	72	63.617	Gadus_morhua
ENSSDUG00000012049	srrt	91	89.606	ENSGAFG00000005423	srrt	95	89.606	Gambusia_affinis
ENSSDUG00000012049	srrt	92	54.501	ENSGAFG00000020383	-	54	64.208	Gambusia_affinis
ENSSDUG00000012049	srrt	95	86.374	ENSGACG00000020387	srrt	95	88.507	Gasterosteus_aculeatus
ENSSDUG00000012049	srrt	92	53.754	ENSGACG00000001100	-	52	62.447	Gasterosteus_aculeatus
ENSSDUG00000012049	srrt	53	75.758	ENSGGOG00000001508	SRRT	59	70.391	Gorilla_gorilla
ENSSDUG00000012049	srrt	98	90.033	ENSHBUG00000002942	srrt	92	90.931	Haplochromis_burtoni
ENSSDUG00000012049	srrt	96	64.637	ENSHGLG00000008344	Srrt	89	70.664	Heterocephalus_glaber_female
ENSSDUG00000012049	srrt	96	65.064	ENSHGLG00100018857	Srrt	89	71.429	Heterocephalus_glaber_male
ENSSDUG00000012049	srrt	98	83.612	ENSHCOG00000005403	srrt	95	84.707	Hippocampus_comes
ENSSDUG00000012049	srrt	92	55.220	ENSHCOG00000008904	-	90	63.877	Hippocampus_comes
ENSSDUG00000012049	srrt	92	72.289	ENSIPUG00000021150	srrt	95	73.081	Ictalurus_punctatus
ENSSDUG00000012049	srrt	96	65.728	ENSSTOG00000013776	SRRT	53	74.892	Ictidomys_tridecemlineatus
ENSSDUG00000012049	srrt	96	65.558	ENSJJAG00000010446	Srrt	89	72.078	Jaculus_jaculus
ENSSDUG00000012049	srrt	95	85.381	ENSKMAG00000013599	srrt	95	89.192	Kryptolebias_marmoratus
ENSSDUG00000012049	srrt	54	64.718	ENSKMAG00000008468	-	53	65.053	Kryptolebias_marmoratus
ENSSDUG00000012049	srrt	98	86.817	ENSLBEG00000016308	srrt	55	92.751	Labrus_bergylta
ENSSDUG00000012049	srrt	65	48.562	ENSLBEG00000028983	-	71	67.719	Labrus_bergylta
ENSSDUG00000012049	srrt	95	57.317	ENSLACG00000001089	SRRT	85	61.736	Latimeria_chalumnae
ENSSDUG00000012049	srrt	77	84.810	ENSLOCG00000013658	srrt	74	85.127	Lepisosteus_oculatus
ENSSDUG00000012049	srrt	91	65.092	ENSLAFG00000007725	SRRT	53	74.839	Loxodonta_africana
ENSSDUG00000012049	srrt	53	75.758	ENSMFAG00000033745	SRRT	56	73.150	Macaca_fascicularis
ENSSDUG00000012049	srrt	96	63.375	ENSMMUG00000021255	SRRT	53	74.624	Macaca_mulatta
ENSSDUG00000012049	srrt	53	75.484	ENSMNEG00000041864	SRRT	53	74.624	Macaca_nemestrina
ENSSDUG00000012049	srrt	53	75.758	ENSMLEG00000029479	SRRT	55	73.150	Mandrillus_leucophaeus
ENSSDUG00000012049	srrt	92	57.283	ENSMAMG00000010681	-	52	67.603	Mastacembelus_armatus
ENSSDUG00000012049	srrt	91	93.070	ENSMAMG00000014311	srrt	95	91.995	Mastacembelus_armatus
ENSSDUG00000012049	srrt	88	57.348	ENSMZEG00005028002	-	76	66.379	Maylandia_zebra
ENSSDUG00000012049	srrt	98	90.233	ENSMZEG00005016135	srrt	92	91.050	Maylandia_zebra
ENSSDUG00000012049	srrt	91	64.311	ENSMAUG00000011386	Srrt	89	70.851	Mesocricetus_auratus
ENSSDUG00000012049	srrt	53	75.484	ENSMICG00000009471	SRRT	55	73.362	Microcebus_murinus
ENSSDUG00000012049	srrt	91	64.774	ENSMOCG00000001971	Srrt	89	71.828	Microtus_ochrogaster
ENSSDUG00000012049	srrt	83	54.677	ENSMMOG00000011137	-	55	65.525	Mola_mola
ENSSDUG00000012049	srrt	53	71.581	ENSMODG00000004862	SRRT	89	71.581	Monodelphis_domestica
ENSSDUG00000012049	srrt	70	45.652	ENSMALG00000005567	-	84	53.524	Monopterus_albus
ENSSDUG00000012049	srrt	90	83.000	ENSMALG00000018604	srrt	99	83.573	Monopterus_albus
ENSSDUG00000012049	srrt	96	65.762	MGP_CAROLIEiJ_G0027870	Srrt	100	71.747	Mus_caroli
ENSSDUG00000012049	srrt	96	65.762	ENSMUSG00000037364	Srrt	99	71.747	Mus_musculus
ENSSDUG00000012049	srrt	91	65.724	MGP_PahariEiJ_G0024456	Srrt	100	71.747	Mus_pahari
ENSSDUG00000012049	srrt	96	65.762	MGP_SPRETEiJ_G0028875	Srrt	100	71.747	Mus_spretus
ENSSDUG00000012049	srrt	96	65.182	ENSMPUG00000015839	SRRT	53	74.624	Mustela_putorius_furo
ENSSDUG00000012049	srrt	96	65.035	ENSMLUG00000009975	SRRT	53	74.409	Myotis_lucifugus
ENSSDUG00000012049	srrt	91	65.465	ENSNGAG00000023715	Srrt	64	74.624	Nannospalax_galili
ENSSDUG00000012049	srrt	93	88.953	ENSNBRG00000019100	srrt	95	88.650	Neolamprologus_brichardi
ENSSDUG00000012049	srrt	95	58.837	ENSNLEG00000011987	SRRT	90	63.913	Nomascus_leucogenys
ENSSDUG00000012049	srrt	96	54.215	ENSMEUG00000011941	SRRT	94	54.296	Notamacropus_eugenii
ENSSDUG00000012049	srrt	63	73.485	ENSOPRG00000002502	-	67	74.242	Ochotona_princeps
ENSSDUG00000012049	srrt	91	65.035	ENSODEG00000016856	SRRT	89	71.645	Octodon_degus
ENSSDUG00000012049	srrt	91	91.061	ENSONIG00000004242	srrt	92	90.703	Oreochromis_niloticus
ENSSDUG00000012049	srrt	88	57.058	ENSONIG00000016080	-	76	67.312	Oreochromis_niloticus
ENSSDUG00000012049	srrt	98	85.082	ENSORLG00000008120	srrt	95	87.694	Oryzias_latipes
ENSSDUG00000012049	srrt	98	84.732	ENSORLG00020003058	srrt	95	87.455	Oryzias_latipes_hni
ENSSDUG00000012049	srrt	98	84.848	ENSORLG00015008062	srrt	95	87.336	Oryzias_latipes_hsok
ENSSDUG00000012049	srrt	89	92.291	ENSOMEG00000003155	srrt	91	92.291	Oryzias_melastigma
ENSSDUG00000012049	srrt	92	58.924	ENSOMEG00000006963	-	80	67.896	Oryzias_melastigma
ENSSDUG00000012049	srrt	53	75.484	ENSOGAG00000017242	SRRT	53	74.624	Otolemur_garnettii
ENSSDUG00000012049	srrt	53	75.325	ENSOARG00000015645	SRRT	53	74.459	Ovis_aries
ENSSDUG00000012049	srrt	53	75.758	ENSPPAG00000041090	SRRT	53	74.892	Pan_paniscus
ENSSDUG00000012049	srrt	96	65.141	ENSPPRG00000009557	SRRT	53	74.892	Panthera_pardus
ENSSDUG00000012049	srrt	96	65.182	ENSPTIG00000014355	SRRT	53	74.624	Panthera_tigris_altaica
ENSSDUG00000012049	srrt	53	75.758	ENSPTRG00000019511	SRRT	53	74.892	Pan_troglodytes
ENSSDUG00000012049	srrt	53	73.996	ENSPANG00000020763	SRRT	54	73.150	Papio_anubis
ENSSDUG00000012049	srrt	98	74.026	ENSPKIG00000005434	srrt	95	72.727	Paramormyrops_kingsleyae
ENSSDUG00000012049	srrt	94	70.843	ENSPKIG00000022212	-	52	81.718	Paramormyrops_kingsleyae
ENSSDUG00000012049	srrt	95	66.386	ENSPSIG00000016311	SRRT	95	65.546	Pelodiscus_sinensis
ENSSDUG00000012049	srrt	98	82.024	ENSPMGG00000002841	srrt	56	89.032	Periophthalmus_magnuspinnatus
ENSSDUG00000012049	srrt	91	65.768	ENSPEMG00000010834	Srrt	89	71.645	Peromyscus_maniculatus_bairdii
ENSSDUG00000012049	srrt	96	55.986	ENSPMAG00000009614	-	55	62.112	Petromyzon_marinus
ENSSDUG00000012049	srrt	96	64.319	ENSPCIG00000000816	SRRT	53	73.233	Phascolarctos_cinereus
ENSSDUG00000012049	srrt	53	63.636	ENSPFOG00000016554	-	54	64.069	Poecilia_formosa
ENSSDUG00000012049	srrt	91	90.573	ENSPFOG00000005704	srrt	95	90.573	Poecilia_formosa
ENSSDUG00000012049	srrt	95	85.006	ENSPLAG00000021992	srrt	95	88.312	Poecilia_latipinna
ENSSDUG00000012049	srrt	92	54.523	ENSPLAG00000004526	-	55	63.715	Poecilia_latipinna
ENSSDUG00000012049	srrt	91	90.334	ENSPMEG00000001182	srrt	95	90.334	Poecilia_mexicana
ENSSDUG00000012049	srrt	95	86.277	ENSPREG00000022308	srrt	95	90.215	Poecilia_reticulata
ENSSDUG00000012049	srrt	53	73.573	ENSPCAG00000001621	SRRT	53	72.727	Procavia_capensis
ENSSDUG00000012049	srrt	53	75.758	ENSPCOG00000025751	SRRT	95	58.228	Propithecus_coquereli
ENSSDUG00000012049	srrt	77	57.372	ENSPVAG00000000834	SRRT	100	56.788	Pteropus_vampyrus
ENSSDUG00000012049	srrt	91	91.408	ENSPNYG00000018710	srrt	95	91.050	Pundamilia_nyererei
ENSSDUG00000012049	srrt	88	66.176	ENSPNAG00000010629	srrt	94	62.082	Pygocentrus_nattereri
ENSSDUG00000012049	srrt	53	66.376	ENSRNOG00000048277	AABR07035787.1	92	65.721	Rattus_norvegicus
ENSSDUG00000012049	srrt	53	75.484	ENSRBIG00000035718	SRRT	63	70.857	Rhinopithecus_bieti
ENSSDUG00000012049	srrt	53	75.484	ENSRROG00000030622	SRRT	63	70.857	Rhinopithecus_roxellana
ENSSDUG00000012049	srrt	53	75.758	ENSSBOG00000033570	SRRT	53	74.892	Saimiri_boliviensis_boliviensis
ENSSDUG00000012049	srrt	71	60.372	ENSSHAG00000007349	-	99	60.686	Sarcophilus_harrisii
ENSSDUG00000012049	srrt	94	77.354	ENSSFOG00015017293	srrt	95	77.712	Scleropages_formosus
ENSSDUG00000012049	srrt	53	63.404	ENSSMAG00000018195	-	57	62.316	Scophthalmus_maximus
ENSSDUG00000012049	srrt	95	89.808	ENSSMAG00000015342	srrt	93	96.053	Scophthalmus_maximus
ENSSDUG00000012049	srrt	100	91.579	ENSSLDG00000017477	srrt	94	99.681	Seriola_lalandi_dorsalis
ENSSDUG00000012049	srrt	96	93.010	ENSSPAG00000005665	srrt	94	92.993	Stegastes_partitus
ENSSDUG00000012049	srrt	53	58.261	ENSSPAG00000018943	-	93	59.219	Stegastes_partitus
ENSSDUG00000012049	srrt	51	74.492	ENSSSCG00000024789	SRRT	54	73.589	Sus_scrofa
ENSSDUG00000012049	srrt	90	54.375	ENSTRUG00000000023	-	51	62.329	Takifugu_rubripes
ENSSDUG00000012049	srrt	98	81.473	ENSTRUG00000016075	srrt	95	85.680	Takifugu_rubripes
ENSSDUG00000012049	srrt	92	54.024	ENSTNIG00000003111	-	53	65.293	Tetraodon_nigroviridis
ENSSDUG00000012049	srrt	71	80.240	ENSTNIG00000011779	srrt	73	88.936	Tetraodon_nigroviridis
ENSSDUG00000012049	srrt	60	77.966	ENSTBEG00000005212	SRRT	57	77.966	Tupaia_belangeri
ENSSDUG00000012049	srrt	53	75.269	ENSTTRG00000011104	SRRT	53	74.409	Tursiops_truncatus
ENSSDUG00000012049	srrt	95	65.480	ENSUAMG00000027997	SRRT	55	74.624	Ursus_americanus
ENSSDUG00000012049	srrt	96	65.603	ENSUMAG00000011295	SRRT	53	74.624	Ursus_maritimus
ENSSDUG00000012049	srrt	96	65.263	ENSVVUG00000023572	SRRT	53	74.409	Vulpes_vulpes
ENSSDUG00000012049	srrt	74	76.404	ENSXETG00000025124	srrt	72	76.433	Xenopus_tropicalis
ENSSDUG00000012049	srrt	55	52.008	ENSXCOG00000013105	-	91	53.595	Xiphophorus_couchianus
ENSSDUG00000012049	srrt	93	89.860	ENSXMAG00000007627	srrt	95	89.725	Xiphophorus_maculatus
ENSSDUG00000012049	srrt	92	54.490	ENSXMAG00000002090	-	54	64.425	Xiphophorus_maculatus