EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000012064 (Gene tree)
Gene ID: 111223365
Gene Symbol: sf3b4
Alias: chunp6902|fb36a04|wu:fb36a04
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 5354 bases
Position: chrBDQW01000110.1:7368463-7373816
Accession: 111223365
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000016503	RRM_1	PF00076.22	3e-39	1	2
ENSSDUP00000016503	RRM_1	PF00076.22	3e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000016810	-	1677	XM_022747472	ENSSDUP00000016503	403 (aa)	XP_022603193	UPI000BBF2996

Gene Model

Click here to download ENSSDUG00000012064's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000012064's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000012064	sf3b4	76	82.188	ENSG00000143368	SF3B4	100	96.842	Homo_sapiens
ENSSDUG00000012064	sf3b4	100	96.774	ENSAPOG00000017647	sf3b4	100	96.774	Acanthochromis_polyacanthus
ENSSDUG00000012064	sf3b4	60	97.083	ENSAMEG00000010073	SF3B4	57	97.083	Ailuropoda_melanoleuca
ENSSDUG00000012064	sf3b4	100	97.519	ENSAOCG00000019801	sf3b4	100	97.519	Amphiprion_ocellaris
ENSSDUG00000012064	sf3b4	100	97.519	ENSAPEG00000010365	sf3b4	100	97.519	Amphiprion_percula
ENSSDUG00000012064	sf3b4	100	96.526	ENSATEG00000012844	sf3b4	100	96.526	Anabas_testudineus
ENSSDUG00000012064	sf3b4	53	100.000	ENSACAG00000010019	SF3B4	55	98.696	Anolis_carolinensis
ENSSDUG00000012064	sf3b4	76	82.188	ENSANAG00000031025	SF3B4	57	97.083	Aotus_nancymaae
ENSSDUG00000012064	sf3b4	67	95.896	ENSACLG00000014260	sf3b4	66	96.241	Astatotilapia_calliptera
ENSSDUG00000012064	sf3b4	70	94.681	ENSAMXG00000008282	sf3b4	73	94.502	Astyanax_mexicanus
ENSSDUG00000012064	sf3b4	53	95.327	ENSBTAG00000012793	-	53	95.327	Bos_taurus
ENSSDUG00000012064	sf3b4	60	97.083	ENSBTAG00000012495	SF3B4	57	97.083	Bos_taurus
ENSSDUG00000012064	sf3b4	63	73.228	WBGene00004723	sap-49	54	81.991	Caenorhabditis_elegans
ENSSDUG00000012064	sf3b4	60	97.083	ENSCAFG00000011617	SF3B4	57	97.083	Canis_familiaris
ENSSDUG00000012064	sf3b4	60	97.083	ENSCAFG00020019775	SF3B4	57	97.083	Canis_lupus_dingo
ENSSDUG00000012064	sf3b4	60	97.083	ENSCHIG00000025663	-	57	97.083	Capra_hircus
ENSSDUG00000012064	sf3b4	76	82.188	ENSTSYG00000009295	SF3B4	57	97.083	Carlito_syrichta
ENSSDUG00000012064	sf3b4	60	97.083	ENSCPOG00000008267	SF3B4	57	97.083	Cavia_porcellus
ENSSDUG00000012064	sf3b4	76	82.188	ENSCATG00000033114	SF3B4	57	97.083	Cercocebus_atys
ENSSDUG00000012064	sf3b4	60	97.083	ENSCLAG00000015851	SF3B4	57	97.083	Chinchilla_lanigera
ENSSDUG00000012064	sf3b4	76	82.188	ENSCSAG00000018129	SF3B4	57	97.083	Chlorocebus_sabaeus
ENSSDUG00000012064	sf3b4	53	100.000	ENSCPBG00000008041	SF3B4	55	98.261	Chrysemys_picta_bellii
ENSSDUG00000012064	sf3b4	56	88.393	ENSCING00000002337	-	57	90.521	Ciona_intestinalis
ENSSDUG00000012064	sf3b4	52	91.429	ENSCSAVG00000007809	-	88	89.697	Ciona_savignyi
ENSSDUG00000012064	sf3b4	76	82.188	ENSCANG00000035579	SF3B4	57	97.083	Colobus_angolensis_palliatus
ENSSDUG00000012064	sf3b4	60	97.083	ENSCGRG00001003590	Sf3b4	57	97.083	Cricetulus_griseus_chok1gshd
ENSSDUG00000012064	sf3b4	60	97.083	ENSCGRG00000016914	Sf3b4	57	97.083	Cricetulus_griseus_crigri
ENSSDUG00000012064	sf3b4	100	89.512	ENSCSEG00000015258	sf3b4	56	97.026	Cynoglossus_semilaevis
ENSSDUG00000012064	sf3b4	66	95.113	ENSCVAG00000005536	sf3b4	68	93.609	Cyprinodon_variegatus
ENSSDUG00000012064	sf3b4	60	97.500	ENSDARG00000018574	sf3b4	66	96.212	Danio_rerio
ENSSDUG00000012064	sf3b4	58	91.810	ENSDNOG00000048908	-	56	91.810	Dasypus_novemcinctus
ENSSDUG00000012064	sf3b4	97	66.000	ENSDNOG00000037231	-	50	87.245	Dasypus_novemcinctus
ENSSDUG00000012064	sf3b4	60	97.083	ENSDORG00000016366	Sf3b4	57	97.083	Dipodomys_ordii
ENSSDUG00000012064	sf3b4	57	88.158	ENSETEG00000008963	SF3B4	54	87.826	Echinops_telfairi
ENSSDUG00000012064	sf3b4	60	97.083	ENSEASG00005001477	SF3B4	57	97.083	Equus_asinus_asinus
ENSSDUG00000012064	sf3b4	60	97.083	ENSECAG00000024737	SF3B4	57	97.083	Equus_caballus
ENSSDUG00000012064	sf3b4	87	92.877	ENSELUG00000012876	sf3b4	66	97.736	Esox_lucius
ENSSDUG00000012064	sf3b4	60	97.083	ENSFCAG00000010106	SF3B4	57	97.083	Felis_catus
ENSSDUG00000012064	sf3b4	60	97.083	ENSFDAG00000009286	SF3B4	57	97.083	Fukomys_damarensis
ENSSDUG00000012064	sf3b4	76	79.479	ENSGMOG00000002519	sf3b4	67	97.826	Gadus_morhua
ENSSDUG00000012064	sf3b4	53	100.000	ENSGALG00000013352	SF3B4	55	98.261	Gallus_gallus
ENSSDUG00000012064	sf3b4	66	96.617	ENSGAFG00000010181	sf3b4	68	96.617	Gambusia_affinis
ENSSDUG00000012064	sf3b4	59	98.729	ENSGACG00000003819	sf3b4	66	95.802	Gasterosteus_aculeatus
ENSSDUG00000012064	sf3b4	76	69.745	ENSGGOG00000038845	-	54	89.524	Gorilla_gorilla
ENSSDUG00000012064	sf3b4	76	82.188	ENSGGOG00000004761	SF3B4	57	97.083	Gorilla_gorilla
ENSSDUG00000012064	sf3b4	67	95.896	ENSHBUG00000002028	sf3b4	66	96.241	Haplochromis_burtoni
ENSSDUG00000012064	sf3b4	60	97.083	ENSHGLG00000012360	SF3B4	57	97.083	Heterocephalus_glaber_female
ENSSDUG00000012064	sf3b4	60	97.083	ENSHGLG00100008533	SF3B4	57	97.083	Heterocephalus_glaber_male
ENSSDUG00000012064	sf3b4	99	85.149	ENSHCOG00000003014	sf3b4	57	96.943	Hippocampus_comes
ENSSDUG00000012064	sf3b4	68	94.565	ENSIPUG00000012242	Sf3b4	66	96.591	Ictalurus_punctatus
ENSSDUG00000012064	sf3b4	60	97.083	ENSSTOG00000000684	-	57	97.083	Ictidomys_tridecemlineatus
ENSSDUG00000012064	sf3b4	59	72.109	ENSJJAG00000022500	Sf3b4	59	72.109	Jaculus_jaculus
ENSSDUG00000012064	sf3b4	66	96.629	ENSKMAG00000008154	sf3b4	67	96.981	Kryptolebias_marmoratus
ENSSDUG00000012064	sf3b4	58	98.712	ENSLBEG00000026818	sf3b4	66	93.985	Labrus_bergylta
ENSSDUG00000012064	sf3b4	60	95.417	ENSLACG00000004436	SF3B4	73	92.830	Latimeria_chalumnae
ENSSDUG00000012064	sf3b4	58	98.707	ENSLOCG00000009048	sf3b4	55	99.130	Lepisosteus_oculatus
ENSSDUG00000012064	sf3b4	76	79.938	ENSLAFG00000008531	SF3B4	56	97.083	Loxodonta_africana
ENSSDUG00000012064	sf3b4	76	82.188	ENSMFAG00000042395	SF3B4	57	97.083	Macaca_fascicularis
ENSSDUG00000012064	sf3b4	89	61.475	ENSMFAG00000039067	-	58	79.263	Macaca_fascicularis
ENSSDUG00000012064	sf3b4	76	82.188	ENSMMUG00000007256	SF3B4	57	97.083	Macaca_mulatta
ENSSDUG00000012064	sf3b4	76	82.188	ENSMNEG00000031839	SF3B4	57	97.083	Macaca_nemestrina
ENSSDUG00000012064	sf3b4	89	60.929	ENSMNEG00000031526	-	58	78.802	Macaca_nemestrina
ENSSDUG00000012064	sf3b4	76	82.188	ENSMLEG00000038667	SF3B4	57	97.083	Mandrillus_leucophaeus
ENSSDUG00000012064	sf3b4	99	96.977	ENSMAMG00000014692	sf3b4	99	96.977	Mastacembelus_armatus
ENSSDUG00000012064	sf3b4	67	95.896	ENSMZEG00005026741	sf3b4	66	96.241	Maylandia_zebra
ENSSDUG00000012064	sf3b4	53	100.000	ENSMGAG00000000653	SF3B4	55	98.261	Meleagris_gallopavo
ENSSDUG00000012064	sf3b4	60	97.083	ENSMAUG00000015266	Sf3b4	57	97.083	Mesocricetus_auratus
ENSSDUG00000012064	sf3b4	60	97.083	ENSMICG00000044961	SF3B4	57	97.083	Microcebus_murinus
ENSSDUG00000012064	sf3b4	60	97.083	ENSMOCG00000013658	-	57	97.083	Microtus_ochrogaster
ENSSDUG00000012064	sf3b4	92	72.308	ENSMOCG00000014155	-	57	94.805	Microtus_ochrogaster
ENSSDUG00000012064	sf3b4	59	98.729	ENSMMOG00000018032	sf3b4	68	95.865	Mola_mola
ENSSDUG00000012064	sf3b4	76	82.188	ENSMODG00000018767	SF3B4	57	97.083	Monodelphis_domestica
ENSSDUG00000012064	sf3b4	81	93.902	ENSMALG00000006174	sf3b4	82	93.902	Monopterus_albus
ENSSDUG00000012064	sf3b4	60	97.083	MGP_CAROLIEiJ_G0025365	Sf3b4	57	97.083	Mus_caroli
ENSSDUG00000012064	sf3b4	60	97.083	ENSMUSG00000068856	Sf3b4	57	97.083	Mus_musculus
ENSSDUG00000012064	sf3b4	60	97.083	MGP_PahariEiJ_G0026809	Sf3b4	57	97.083	Mus_pahari
ENSSDUG00000012064	sf3b4	60	97.083	MGP_SPRETEiJ_G0026309	Sf3b4	57	97.083	Mus_spretus
ENSSDUG00000012064	sf3b4	60	97.083	ENSMPUG00000005563	SF3B4	57	97.083	Mustela_putorius_furo
ENSSDUG00000012064	sf3b4	60	97.500	ENSMLUG00000010789	SF3B4	57	97.500	Myotis_lucifugus
ENSSDUG00000012064	sf3b4	76	81.818	ENSNGAG00000016337	Sf3b4	57	97.083	Nannospalax_galili
ENSSDUG00000012064	sf3b4	67	96.642	ENSNBRG00000013865	sf3b4	66	96.992	Neolamprologus_brichardi
ENSSDUG00000012064	sf3b4	96	66.667	ENSNLEG00000000537	-	58	88.261	Nomascus_leucogenys
ENSSDUG00000012064	sf3b4	57	93.860	ENSOPRG00000010808	SF3B4	54	93.478	Ochotona_princeps
ENSSDUG00000012064	sf3b4	91	57.937	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSSDUG00000012064	sf3b4	75	69.182	ENSODEG00000003597	-	59	80.913	Octodon_degus
ENSSDUG00000012064	sf3b4	67	95.522	ENSONIG00000002730	sf3b4	66	95.865	Oreochromis_niloticus
ENSSDUG00000012064	sf3b4	60	97.083	ENSOCUG00000004614	SF3B4	57	97.083	Oryctolagus_cuniculus
ENSSDUG00000012064	sf3b4	86	89.459	ENSORLG00000003062	sf3b4	59	99.130	Oryzias_latipes
ENSSDUG00000012064	sf3b4	74	91.060	ENSORLG00020000687	sf3b4	58	99.130	Oryzias_latipes_hni
ENSSDUG00000012064	sf3b4	74	91.060	ENSORLG00015010989	sf3b4	58	99.130	Oryzias_latipes_hsok
ENSSDUG00000012064	sf3b4	58	98.707	ENSOMEG00000013694	sf3b4	68	93.680	Oryzias_melastigma
ENSSDUG00000012064	sf3b4	60	97.083	ENSOGAG00000006265	SF3B4	57	97.083	Otolemur_garnettii
ENSSDUG00000012064	sf3b4	60	97.083	ENSOARG00000020718	-	57	97.083	Ovis_aries
ENSSDUG00000012064	sf3b4	71	72.973	ENSOARG00000007368	-	55	81.416	Ovis_aries
ENSSDUG00000012064	sf3b4	76	76.752	ENSPPAG00000030024	-	59	87.083	Pan_paniscus
ENSSDUG00000012064	sf3b4	76	82.188	ENSPPAG00000040904	SF3B4	57	97.083	Pan_paniscus
ENSSDUG00000012064	sf3b4	60	97.083	ENSPPRG00000007384	SF3B4	57	97.083	Panthera_pardus
ENSSDUG00000012064	sf3b4	60	97.083	ENSPTIG00000014530	SF3B4	57	97.083	Panthera_tigris_altaica
ENSSDUG00000012064	sf3b4	76	76.699	ENSPTRG00000049727	-	60	87.500	Pan_troglodytes
ENSSDUG00000012064	sf3b4	76	82.188	ENSPTRG00000001243	SF3B4	57	97.083	Pan_troglodytes
ENSSDUG00000012064	sf3b4	76	82.188	ENSPANG00000005126	SF3B4	57	97.083	Papio_anubis
ENSSDUG00000012064	sf3b4	70	96.454	ENSPKIG00000020669	sf3b4	77	96.207	Paramormyrops_kingsleyae
ENSSDUG00000012064	sf3b4	66	77.736	ENSPSIG00000009565	SF3B4	68	98.387	Pelodiscus_sinensis
ENSSDUG00000012064	sf3b4	60	97.083	ENSPEMG00000017568	Sf3b4	57	97.083	Peromyscus_maniculatus_bairdii
ENSSDUG00000012064	sf3b4	53	95.305	ENSPMAG00000007842	-	50	95.283	Petromyzon_marinus
ENSSDUG00000012064	sf3b4	76	82.188	ENSPCIG00000008765	SF3B4	57	97.083	Phascolarctos_cinereus
ENSSDUG00000012064	sf3b4	66	96.629	ENSPFOG00000005754	sf3b4	68	96.617	Poecilia_formosa
ENSSDUG00000012064	sf3b4	66	96.629	ENSPLAG00000001401	sf3b4	73	96.617	Poecilia_latipinna
ENSSDUG00000012064	sf3b4	66	96.629	ENSPREG00000011076	sf3b4	66	96.617	Poecilia_reticulata
ENSSDUG00000012064	sf3b4	52	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSSDUG00000012064	sf3b4	60	97.083	ENSPCOG00000015399	SF3B4	57	97.083	Propithecus_coquereli
ENSSDUG00000012064	sf3b4	60	97.083	ENSPVAG00000014171	SF3B4	57	97.083	Pteropus_vampyrus
ENSSDUG00000012064	sf3b4	67	95.896	ENSPNYG00000012700	sf3b4	66	96.241	Pundamilia_nyererei
ENSSDUG00000012064	sf3b4	60	97.500	ENSPNAG00000000686	sf3b4	67	96.591	Pygocentrus_nattereri
ENSSDUG00000012064	sf3b4	60	97.083	ENSRNOG00000021181	Sf3b4	57	97.083	Rattus_norvegicus
ENSSDUG00000012064	sf3b4	76	82.188	ENSRBIG00000043392	SF3B4	57	97.083	Rhinopithecus_bieti
ENSSDUG00000012064	sf3b4	92	59.481	ENSRROG00000028213	-	56	74.324	Rhinopithecus_roxellana
ENSSDUG00000012064	sf3b4	76	82.188	ENSRROG00000029366	SF3B4	57	97.083	Rhinopithecus_roxellana
ENSSDUG00000012064	sf3b4	76	81.875	ENSSBOG00000012310	-	57	96.667	Saimiri_boliviensis_boliviensis
ENSSDUG00000012064	sf3b4	76	78.750	ENSSHAG00000004043	SF3B4	56	92.500	Sarcophilus_harrisii
ENSSDUG00000012064	sf3b4	70	96.454	ENSSFOG00015008864	sf3b4	71	96.220	Scleropages_formosus
ENSSDUG00000012064	sf3b4	100	90.819	ENSSMAG00000006837	sf3b4	67	98.120	Scophthalmus_maximus
ENSSDUG00000012064	sf3b4	100	99.256	ENSSLDG00000014226	sf3b4	100	99.256	Seriola_lalandi_dorsalis
ENSSDUG00000012064	sf3b4	100	98.015	ENSSPAG00000019219	sf3b4	100	98.015	Stegastes_partitus
ENSSDUG00000012064	sf3b4	76	80.186	ENSSSCG00000006665	-	57	97.083	Sus_scrofa
ENSSDUG00000012064	sf3b4	59	96.610	ENSTGUG00000004470	SF3B4	90	98.253	Taeniopygia_guttata
ENSSDUG00000012064	sf3b4	79	90.282	ENSTRUG00000004516	sf3b4	67	94.361	Takifugu_rubripes
ENSSDUG00000012064	sf3b4	66	95.113	ENSTNIG00000009156	sf3b4	68	91.481	Tetraodon_nigroviridis
ENSSDUG00000012064	sf3b4	60	97.083	ENSTTRG00000005217	SF3B4	57	97.083	Tursiops_truncatus
ENSSDUG00000012064	sf3b4	60	97.083	ENSUAMG00000022468	SF3B4	57	97.083	Ursus_americanus
ENSSDUG00000012064	sf3b4	60	97.083	ENSUMAG00000003802	SF3B4	57	97.083	Ursus_maritimus
ENSSDUG00000012064	sf3b4	57	96.930	ENSVPAG00000008152	SF3B4	55	96.930	Vicugna_pacos
ENSSDUG00000012064	sf3b4	60	97.083	ENSVVUG00000007732	-	61	97.083	Vulpes_vulpes
ENSSDUG00000012064	sf3b4	76	82.295	ENSXETG00000011038	sf3b4	53	100.000	Xenopus_tropicalis
ENSSDUG00000012064	sf3b4	66	97.004	ENSXCOG00000019895	sf3b4	68	96.992	Xiphophorus_couchianus
ENSSDUG00000012064	sf3b4	66	96.992	ENSXMAG00000003772	sf3b4	68	96.992	Xiphophorus_maculatus