EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000012206 (Gene tree)
Gene ID: 111229376
Gene Symbol: gatc
Alias: si:rp71-1c23.3
Full Name: glutamyl-tRNA amidotransferase subunit C
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 2761 bases
Position: chrBDQW01000017.1:538152-540912
Accession: 111229376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000016703	Glu-tRNAGln	PF02686.15	2.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000017009	-	1690	XM_022755689	ENSSDUP00000016703	195 (aa)	XP_022611410	UPI000BBF142D

Gene Model

Click here to download ENSSDUG00000012206's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu00970	Aminoacyl-tRNA biosynthesis	KEGG
sdu01100	Metabolic pathways	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000012206's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000012206	gatc	52	64.356	ENSG00000257218	GATC	100	74.468	Homo_sapiens
ENSSDUG00000012206	gatc	52	62.376	ENSAMEG00000013298	-	74	62.376	Ailuropoda_melanoleuca
ENSSDUG00000012206	gatc	63	90.244	ENSAOCG00000014641	gatc	98	90.244	Amphiprion_ocellaris
ENSSDUG00000012206	gatc	100	73.846	ENSAPEG00000023411	gatc	100	73.846	Amphiprion_percula
ENSSDUG00000012206	gatc	53	67.308	ENSACAG00000002868	-	77	67.308	Anolis_carolinensis
ENSSDUG00000012206	gatc	52	65.347	ENSANAG00000034389	-	74	65.347	Aotus_nancymaae
ENSSDUG00000012206	gatc	100	71.795	ENSACLG00000026251	gatc	100	71.795	Astatotilapia_calliptera
ENSSDUG00000012206	gatc	68	76.515	ENSAMXG00000004252	gatc	70	67.284	Astyanax_mexicanus
ENSSDUG00000012206	gatc	52	60.396	ENSBTAG00000012791	GATC	74	60.396	Bos_taurus
ENSSDUG00000012206	gatc	55	37.963	WBGene00013433	Y66D12A.7	62	37.963	Caenorhabditis_elegans
ENSSDUG00000012206	gatc	52	65.347	ENSCJAG00000001183	-	55	65.347	Callithrix_jacchus
ENSSDUG00000012206	gatc	52	63.366	ENSCAFG00000010311	-	74	63.366	Canis_familiaris
ENSSDUG00000012206	gatc	52	63.366	ENSCAFG00020020606	-	74	63.366	Canis_lupus_dingo
ENSSDUG00000012206	gatc	55	57.944	ENSCHIG00000019423	-	79	57.944	Capra_hircus
ENSSDUG00000012206	gatc	52	64.356	ENSTSYG00000006845	-	74	64.356	Carlito_syrichta
ENSSDUG00000012206	gatc	52	65.347	ENSCCAG00000022235	-	74	65.347	Cebus_capucinus
ENSSDUG00000012206	gatc	52	64.356	ENSCATG00000038807	GATC	74	64.356	Cercocebus_atys
ENSSDUG00000012206	gatc	50	63.918	ENSCLAG00000011015	-	61	63.918	Chinchilla_lanigera
ENSSDUG00000012206	gatc	52	65.347	ENSCSAG00000002259	GATC	74	65.347	Chlorocebus_sabaeus
ENSSDUG00000012206	gatc	52	63.366	ENSCHOG00000009235	-	74	63.366	Choloepus_hoffmanni
ENSSDUG00000012206	gatc	66	59.375	ENSCPBG00000011342	-	68	59.375	Chrysemys_picta_bellii
ENSSDUG00000012206	gatc	52	64.356	ENSCANG00000031071	GATC	74	64.356	Colobus_angolensis_palliatus
ENSSDUG00000012206	gatc	66	53.488	ENSCGRG00001019220	-	83	53.488	Cricetulus_griseus_chok1gshd
ENSSDUG00000012206	gatc	66	53.488	ENSCGRG00000004184	-	83	53.488	Cricetulus_griseus_crigri
ENSSDUG00000012206	gatc	99	55.959	ENSCSEG00000016618	-	99	55.959	Cynoglossus_semilaevis
ENSSDUG00000012206	gatc	99	64.767	ENSCSEG00000007798	gatc	93	64.767	Cynoglossus_semilaevis
ENSSDUG00000012206	gatc	100	70.769	ENSCVAG00000004364	gatc	99	70.769	Cyprinodon_variegatus
ENSSDUG00000012206	gatc	94	58.919	ENSDARG00000056855	gatc	98	58.919	Danio_rerio
ENSSDUG00000012206	gatc	71	51.299	ENSDNOG00000012593	-	81	51.299	Dasypus_novemcinctus
ENSSDUG00000012206	gatc	69	41.045	FBgn0064115	GatC	90	41.045	Drosophila_melanogaster
ENSSDUG00000012206	gatc	51	55.556	ENSETEG00000002604	-	73	55.556	Echinops_telfairi
ENSSDUG00000012206	gatc	52	65.347	ENSECAG00000011118	-	74	65.347	Equus_caballus
ENSSDUG00000012206	gatc	51	59.000	ENSEEUG00000011638	-	74	59.000	Erinaceus_europaeus
ENSSDUG00000012206	gatc	69	70.290	ENSELUG00000012608	gatc	75	81.553	Esox_lucius
ENSSDUG00000012206	gatc	52	62.376	ENSFCAG00000038718	-	74	62.376	Felis_catus
ENSSDUG00000012206	gatc	57	58.929	ENSFALG00000007564	-	74	58.929	Ficedula_albicollis
ENSSDUG00000012206	gatc	55	63.889	ENSFDAG00000018720	-	79	63.889	Fukomys_damarensis
ENSSDUG00000012206	gatc	98	71.204	ENSFHEG00000014992	GATC	99	71.204	Fundulus_heteroclitus
ENSSDUG00000012206	gatc	83	62.963	ENSGMOG00000008742	gatc	99	62.963	Gadus_morhua
ENSSDUG00000012206	gatc	54	59.434	ENSGALG00000007195	-	80	58.929	Gallus_gallus
ENSSDUG00000012206	gatc	66	79.688	ENSGAFG00000012801	gatc	81	79.688	Gambusia_affinis
ENSSDUG00000012206	gatc	100	70.769	ENSGACG00000008973	gatc	100	70.769	Gasterosteus_aculeatus
ENSSDUG00000012206	gatc	66	60.938	ENSGAGG00000016018	-	70	60.938	Gopherus_agassizii
ENSSDUG00000012206	gatc	100	72.821	ENSHBUG00000006827	gatc	100	72.821	Haplochromis_burtoni
ENSSDUG00000012206	gatc	55	63.889	ENSHGLG00000011394	GATC	79	63.889	Heterocephalus_glaber_female
ENSSDUG00000012206	gatc	55	62.037	ENSHGLG00100018850	-	78	62.037	Heterocephalus_glaber_male
ENSSDUG00000012206	gatc	66	80.469	ENSHCOG00000009209	gatc	100	80.469	Hippocampus_comes
ENSSDUG00000012206	gatc	66	75.969	ENSIPUG00000023072	gatc	60	75.969	Ictalurus_punctatus
ENSSDUG00000012206	gatc	52	63.366	ENSSTOG00000025740	-	66	63.366	Ictidomys_tridecemlineatus
ENSSDUG00000012206	gatc	67	78.462	ENSKMAG00000016476	gatc	100	78.462	Kryptolebias_marmoratus
ENSSDUG00000012206	gatc	100	68.718	ENSLBEG00000007603	gatc	100	68.718	Labrus_bergylta
ENSSDUG00000012206	gatc	67	55.725	ENSLACG00000018239	-	68	55.725	Latimeria_chalumnae
ENSSDUG00000012206	gatc	84	60.366	ENSLOCG00000004056	gatc	79	60.366	Lepisosteus_oculatus
ENSSDUG00000012206	gatc	52	64.356	ENSMFAG00000034197	GATC	74	64.356	Macaca_fascicularis
ENSSDUG00000012206	gatc	52	64.356	ENSMMUG00000046665	GATC	74	64.356	Macaca_mulatta
ENSSDUG00000012206	gatc	52	64.356	ENSMNEG00000034653	GATC	74	64.356	Macaca_nemestrina
ENSSDUG00000012206	gatc	52	65.347	ENSMLEG00000039862	GATC	74	65.347	Mandrillus_leucophaeus
ENSSDUG00000012206	gatc	100	71.795	ENSMAMG00000015851	gatc	100	71.795	Mastacembelus_armatus
ENSSDUG00000012206	gatc	100	71.795	ENSMZEG00005016072	gatc	100	71.795	Maylandia_zebra
ENSSDUG00000012206	gatc	54	60.377	ENSMGAG00000008733	-	100	60.377	Meleagris_gallopavo
ENSSDUG00000012206	gatc	64	55.556	ENSMAUG00000012756	Gatc	81	55.556	Mesocricetus_auratus
ENSSDUG00000012206	gatc	52	65.347	ENSMICG00000008669	-	74	65.347	Microcebus_murinus
ENSSDUG00000012206	gatc	59	81.197	ENSMMOG00000017695	gatc	92	82.727	Mola_mola
ENSSDUG00000012206	gatc	70	51.471	ENSMODG00000003152	-	95	51.471	Monodelphis_domestica
ENSSDUG00000012206	gatc	52	63.366	ENSMPUG00000003183	-	74	63.366	Mustela_putorius_furo
ENSSDUG00000012206	gatc	100	73.333	ENSNBRG00000007810	gatc	100	73.333	Neolamprologus_brichardi
ENSSDUG00000012206	gatc	54	62.857	ENSNLEG00000015651	GATC	77	62.857	Nomascus_leucogenys
ENSSDUG00000012206	gatc	53	60.577	ENSMEUG00000004064	-	84	60.577	Notamacropus_eugenii
ENSSDUG00000012206	gatc	51	66.000	ENSOPRG00000004226	-	74	66.000	Ochotona_princeps
ENSSDUG00000012206	gatc	66	86.260	ENSONIG00000013444	gatc	90	86.260	Oreochromis_niloticus
ENSSDUG00000012206	gatc	53	63.462	ENSOCUG00000009867	-	76	63.462	Oryctolagus_cuniculus
ENSSDUG00000012206	gatc	62	81.818	ENSORLG00000007156	gatc	100	81.818	Oryzias_latipes
ENSSDUG00000012206	gatc	100	66.154	ENSORLG00020014991	gatc	100	66.154	Oryzias_latipes_hni
ENSSDUG00000012206	gatc	100	66.154	ENSORLG00015003450	gatc	100	66.154	Oryzias_latipes_hsok
ENSSDUG00000012206	gatc	100	62.944	ENSOMEG00000002280	gatc	100	62.944	Oryzias_melastigma
ENSSDUG00000012206	gatc	54	62.857	ENSOGAG00000003850	-	96	62.857	Otolemur_garnettii
ENSSDUG00000012206	gatc	61	54.032	ENSOARG00000012338	-	96	54.032	Ovis_aries
ENSSDUG00000012206	gatc	52	63.366	ENSPPAG00000029164	GATC	74	63.366	Pan_paniscus
ENSSDUG00000012206	gatc	52	62.376	ENSPPRG00000000929	-	74	62.376	Panthera_pardus
ENSSDUG00000012206	gatc	52	62.376	ENSPTIG00000009889	-	74	62.376	Panthera_tigris_altaica
ENSSDUG00000012206	gatc	52	63.366	ENSPTRG00000049887	GATC	75	63.366	Pan_troglodytes
ENSSDUG00000012206	gatc	52	63.366	ENSPANG00000033975	GATC	74	63.366	Papio_anubis
ENSSDUG00000012206	gatc	97	53.886	ENSPKIG00000024856	gatc	96	53.886	Paramormyrops_kingsleyae
ENSSDUG00000012206	gatc	57	63.063	ENSPSIG00000011112	-	95	63.063	Pelodiscus_sinensis
ENSSDUG00000012206	gatc	65	81.746	ENSPMGG00000018829	gatc	80	81.746	Periophthalmus_magnuspinnatus
ENSSDUG00000012206	gatc	96	70.213	ENSPFOG00000011603	gatc	97	70.213	Poecilia_formosa
ENSSDUG00000012206	gatc	96	69.681	ENSPLAG00000002471	gatc	97	69.681	Poecilia_latipinna
ENSSDUG00000012206	gatc	96	69.681	ENSPMEG00000020958	gatc	97	69.681	Poecilia_mexicana
ENSSDUG00000012206	gatc	57	88.288	ENSPREG00000022256	gatc	75	88.288	Poecilia_reticulata
ENSSDUG00000012206	gatc	55	62.963	ENSPPYG00000005030	GATC	79	62.963	Pongo_abelii
ENSSDUG00000012206	gatc	52	63.366	ENSPCAG00000013864	-	74	63.366	Procavia_capensis
ENSSDUG00000012206	gatc	50	64.948	ENSPVAG00000002228	-	72	64.948	Pteropus_vampyrus
ENSSDUG00000012206	gatc	100	73.846	ENSPNYG00000016015	gatc	100	73.846	Pundamilia_nyererei
ENSSDUG00000012206	gatc	83	63.190	ENSPNAG00000001239	gatc	71	62.963	Pygocentrus_nattereri
ENSSDUG00000012206	gatc	52	63.366	ENSRBIG00000033363	GATC	74	63.366	Rhinopithecus_bieti
ENSSDUG00000012206	gatc	52	63.366	ENSRROG00000042802	GATC	74	63.366	Rhinopithecus_roxellana
ENSSDUG00000012206	gatc	52	63.366	ENSSBOG00000033750	-	74	63.366	Saimiri_boliviensis_boliviensis
ENSSDUG00000012206	gatc	54	59.434	ENSSHAG00000005745	-	100	59.434	Sarcophilus_harrisii
ENSSDUG00000012206	gatc	79	57.962	ENSSFOG00015002508	gatc	97	57.962	Scleropages_formosus
ENSSDUG00000012206	gatc	100	76.923	ENSSMAG00000014280	gatc	100	76.923	Scophthalmus_maximus
ENSSDUG00000012206	gatc	100	97.436	ENSSLDG00000025159	gatc	98	97.436	Seriola_lalandi_dorsalis
ENSSDUG00000012206	gatc	62	57.025	ENSSPUG00000015693	-	93	55.469	Sphenodon_punctatus
ENSSDUG00000012206	gatc	100	75.897	ENSSPAG00000011860	gatc	100	75.897	Stegastes_partitus
ENSSDUG00000012206	gatc	58	61.404	ENSSSCG00000032747	-	80	61.404	Sus_scrofa
ENSSDUG00000012206	gatc	55	62.617	ENSTGUG00000009561	-	99	62.617	Taeniopygia_guttata
ENSSDUG00000012206	gatc	71	77.536	ENSTRUG00000021596	gatc	96	62.626	Takifugu_rubripes
ENSSDUG00000012206	gatc	84	69.461	ENSTNIG00000015879	gatc	81	69.461	Tetraodon_nigroviridis
ENSSDUG00000012206	gatc	51	65.000	ENSTTRG00000000144	GATC	74	65.000	Tursiops_truncatus
ENSSDUG00000012206	gatc	52	63.366	ENSUAMG00000015523	-	74	63.366	Ursus_americanus
ENSSDUG00000012206	gatc	52	63.366	ENSVVUG00000021055	-	74	63.366	Vulpes_vulpes
ENSSDUG00000012206	gatc	57	87.387	ENSXCOG00000017087	gatc	81	87.387	Xiphophorus_couchianus
ENSSDUG00000012206	gatc	99	68.557	ENSXMAG00000018267	gatc	100	68.557	Xiphophorus_maculatus