EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000012313 (Gene tree)
Gene ID: 111224474
Gene Symbol: urb1
Alias: mp:zf637-1-000544|zf637-1-000544
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 14381 bases
Position: chrBDQW01000134.1:1250544-1264924
Accession: 111224474
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000016873	Npa1	PF11707.8	1.1e-83	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000017179	-	7538	XM_022748973	ENSSDUP00000016873	2260 (aa)	XP_022604694	-

Gene Model

Click here to download ENSSDUG00000012313's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000012313's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000012313	urb1	99	44.861	ENSG00000142207	URB1	99	44.725	Homo_sapiens
ENSSDUG00000012313	urb1	97	81.747	ENSAPOG00000020308	urb1	99	81.747	Acanthochromis_polyacanthus
ENSSDUG00000012313	urb1	99	44.913	ENSAMEG00000011998	URB1	99	45.048	Ailuropoda_melanoleuca
ENSSDUG00000012313	urb1	98	72.451	ENSACIG00000003248	urb1	99	72.451	Amphilophus_citrinellus
ENSSDUG00000012313	urb1	99	72.335	ENSAOCG00000010364	urb1	100	72.335	Amphiprion_ocellaris
ENSSDUG00000012313	urb1	97	81.885	ENSAPEG00000010758	urb1	100	81.885	Amphiprion_percula
ENSSDUG00000012313	urb1	99	81.652	ENSATEG00000011790	urb1	100	81.652	Anabas_testudineus
ENSSDUG00000012313	urb1	97	47.260	ENSAPLG00000012791	URB1	99	47.439	Anas_platyrhynchos
ENSSDUG00000012313	urb1	99	45.407	ENSACAG00000002817	URB1	99	45.581	Anolis_carolinensis
ENSSDUG00000012313	urb1	99	44.832	ENSANAG00000024617	URB1	99	44.832	Aotus_nancymaae
ENSSDUG00000012313	urb1	99	78.840	ENSACLG00000024865	urb1	100	78.840	Astatotilapia_calliptera
ENSSDUG00000012313	urb1	99	49.824	ENSAMXG00000012306	urb1	99	49.824	Astyanax_mexicanus
ENSSDUG00000012313	urb1	99	44.304	ENSBTAG00000012412	URB1	99	44.391	Bos_taurus
ENSSDUG00000012313	urb1	99	44.643	ENSCJAG00000009118	URB1	99	44.643	Callithrix_jacchus
ENSSDUG00000012313	urb1	99	44.478	ENSCAFG00000008892	URB1	99	44.478	Canis_familiaris
ENSSDUG00000012313	urb1	99	44.323	ENSCAFG00020025987	-	99	44.323	Canis_lupus_dingo
ENSSDUG00000012313	urb1	99	43.867	ENSCAFG00020025994	-	99	43.829	Canis_lupus_dingo
ENSSDUG00000012313	urb1	99	44.696	ENSCHIG00000015645	URB1	99	44.715	Capra_hircus
ENSSDUG00000012313	urb1	99	44.922	ENSTSYG00000013286	URB1	99	44.965	Carlito_syrichta
ENSSDUG00000012313	urb1	98	44.128	ENSCAPG00000015589	URB1	99	44.128	Cavia_aperea
ENSSDUG00000012313	urb1	99	44.749	ENSCPOG00000006748	URB1	99	44.749	Cavia_porcellus
ENSSDUG00000012313	urb1	99	44.760	ENSCCAG00000021299	URB1	99	44.760	Cebus_capucinus
ENSSDUG00000012313	urb1	99	44.874	ENSCATG00000042630	URB1	99	45.135	Cercocebus_atys
ENSSDUG00000012313	urb1	99	45.466	ENSCLAG00000005262	URB1	99	45.557	Chinchilla_lanigera
ENSSDUG00000012313	urb1	99	44.127	ENSCSAG00000009584	URB1	99	44.387	Chlorocebus_sabaeus
ENSSDUG00000012313	urb1	99	48.151	ENSCPBG00000006454	URB1	99	48.325	Chrysemys_picta_bellii
ENSSDUG00000012313	urb1	99	44.917	ENSCANG00000031088	URB1	99	45.178	Colobus_angolensis_palliatus
ENSSDUG00000012313	urb1	99	44.718	ENSCGRG00001010616	Urb1	99	44.614	Cricetulus_griseus_chok1gshd
ENSSDUG00000012313	urb1	98	44.775	ENSCGRG00000015840	Urb1	99	44.775	Cricetulus_griseus_crigri
ENSSDUG00000012313	urb1	99	72.151	ENSCSEG00000012616	urb1	99	72.151	Cynoglossus_semilaevis
ENSSDUG00000012313	urb1	94	72.823	ENSCVAG00000009076	urb1	98	75.157	Cyprinodon_variegatus
ENSSDUG00000012313	urb1	99	54.857	ENSDARG00000060308	urb1	99	54.901	Danio_rerio
ENSSDUG00000012313	urb1	85	48.205	ENSDNOG00000015586	URB1	99	48.256	Dasypus_novemcinctus
ENSSDUG00000012313	urb1	99	44.580	ENSDORG00000006735	Urb1	99	44.624	Dipodomys_ordii
ENSSDUG00000012313	urb1	92	52.527	ENSETEG00000009080	URB1	92	52.527	Echinops_telfairi
ENSSDUG00000012313	urb1	95	50.609	ENSEASG00005007711	URB1	99	44.733	Equus_asinus_asinus
ENSSDUG00000012313	urb1	95	54.679	ENSECAG00000013206	URB1	99	54.679	Equus_caballus
ENSSDUG00000012313	urb1	99	59.484	ENSELUG00000020516	urb1	99	59.694	Esox_lucius
ENSSDUG00000012313	urb1	99	44.692	ENSFCAG00000002177	URB1	99	44.605	Felis_catus
ENSSDUG00000012313	urb1	98	43.430	ENSFALG00000004636	URB1	99	43.385	Ficedula_albicollis
ENSSDUG00000012313	urb1	99	44.849	ENSFDAG00000007288	URB1	95	44.709	Fukomys_damarensis
ENSSDUG00000012313	urb1	99	67.506	ENSFHEG00000000202	urb1	99	71.479	Fundulus_heteroclitus
ENSSDUG00000012313	urb1	93	61.082	ENSGMOG00000001838	urb1	94	61.082	Gadus_morhua
ENSSDUG00000012313	urb1	99	47.857	ENSGALG00000015887	URB1	98	48.078	Gallus_gallus
ENSSDUG00000012313	urb1	99	69.248	ENSGAFG00000020694	urb1	99	73.163	Gambusia_affinis
ENSSDUG00000012313	urb1	99	79.582	ENSGACG00000011703	urb1	99	79.582	Gasterosteus_aculeatus
ENSSDUG00000012313	urb1	99	48.066	ENSGAGG00000022544	URB1	99	48.066	Gopherus_agassizii
ENSSDUG00000012313	urb1	99	45.132	ENSGGOG00000000285	URB1	99	45.000	Gorilla_gorilla
ENSSDUG00000012313	urb1	99	78.619	ENSHBUG00000001904	urb1	100	78.619	Haplochromis_burtoni
ENSSDUG00000012313	urb1	99	43.454	ENSHGLG00000004907	URB1	99	43.454	Heterocephalus_glaber_female
ENSSDUG00000012313	urb1	99	43.761	ENSHGLG00100010749	URB1	99	43.761	Heterocephalus_glaber_male
ENSSDUG00000012313	urb1	72	76.493	ENSHCOG00000018683	urb1	98	76.493	Hippocampus_comes
ENSSDUG00000012313	urb1	99	49.343	ENSIPUG00000014721	urb1	99	49.343	Ictalurus_punctatus
ENSSDUG00000012313	urb1	99	45.507	ENSSTOG00000004539	URB1	99	45.300	Ictidomys_tridecemlineatus
ENSSDUG00000012313	urb1	92	77.719	ENSKMAG00000006001	urb1	99	74.805	Kryptolebias_marmoratus
ENSSDUG00000012313	urb1	97	72.876	ENSLBEG00000027208	urb1	99	72.876	Labrus_bergylta
ENSSDUG00000012313	urb1	99	45.207	ENSLACG00000017059	URB1	100	45.207	Latimeria_chalumnae
ENSSDUG00000012313	urb1	99	55.614	ENSLOCG00000009190	urb1	99	55.614	Lepisosteus_oculatus
ENSSDUG00000012313	urb1	99	44.764	ENSLAFG00000010407	URB1	99	44.764	Loxodonta_africana
ENSSDUG00000012313	urb1	99	44.570	ENSMFAG00000034391	URB1	97	44.831	Macaca_fascicularis
ENSSDUG00000012313	urb1	99	44.570	ENSMMUG00000010295	URB1	99	44.831	Macaca_mulatta
ENSSDUG00000012313	urb1	99	44.005	ENSMNEG00000032981	URB1	99	44.092	Macaca_nemestrina
ENSSDUG00000012313	urb1	99	44.807	ENSMLEG00000041435	URB1	99	45.067	Mandrillus_leucophaeus
ENSSDUG00000012313	urb1	99	76.709	ENSMAMG00000011238	urb1	99	76.709	Mastacembelus_armatus
ENSSDUG00000012313	urb1	99	71.278	ENSMZEG00005011862	urb1	100	71.278	Maylandia_zebra
ENSSDUG00000012313	urb1	98	47.051	ENSMGAG00000014512	URB1	99	47.228	Meleagris_gallopavo
ENSSDUG00000012313	urb1	93	51.890	ENSMAUG00000010516	Urb1	99	51.890	Mesocricetus_auratus
ENSSDUG00000012313	urb1	100	44.314	ENSMICG00000016424	URB1	99	44.401	Microcebus_murinus
ENSSDUG00000012313	urb1	99	44.082	ENSMOCG00000012613	Urb1	99	44.212	Microtus_ochrogaster
ENSSDUG00000012313	urb1	99	44.526	ENSMODG00000021076	URB1	99	44.526	Monodelphis_domestica
ENSSDUG00000012313	urb1	99	75.309	ENSMALG00000017411	urb1	99	75.309	Monopterus_albus
ENSSDUG00000012313	urb1	99	43.567	MGP_CAROLIEiJ_G0020948	Urb1	99	43.567	Mus_caroli
ENSSDUG00000012313	urb1	99	43.393	ENSMUSG00000039929	Urb1	99	43.393	Mus_musculus
ENSSDUG00000012313	urb1	99	43.704	MGP_PahariEiJ_G0016653	Urb1	99	43.704	Mus_pahari
ENSSDUG00000012313	urb1	99	43.579	MGP_SPRETEiJ_G0021854	Urb1	99	43.715	Mus_spretus
ENSSDUG00000012313	urb1	99	44.745	ENSMPUG00000001123	URB1	99	44.926	Mustela_putorius_furo
ENSSDUG00000012313	urb1	99	43.851	ENSNGAG00000001905	Urb1	99	43.851	Nannospalax_galili
ENSSDUG00000012313	urb1	83	74.792	ENSNBRG00000001049	urb1	99	74.792	Neolamprologus_brichardi
ENSSDUG00000012313	urb1	99	43.511	ENSNLEG00000026872	URB1	99	43.557	Nomascus_leucogenys
ENSSDUG00000012313	urb1	96	41.825	ENSMEUG00000010828	URB1	96	42.205	Notamacropus_eugenii
ENSSDUG00000012313	urb1	99	43.001	ENSOPRG00000013482	URB1	99	43.001	Ochotona_princeps
ENSSDUG00000012313	urb1	99	44.624	ENSODEG00000002587	URB1	99	44.624	Octodon_degus
ENSSDUG00000012313	urb1	99	79.204	ENSONIG00000005599	urb1	100	79.204	Oreochromis_niloticus
ENSSDUG00000012313	urb1	99	45.244	ENSOCUG00000009381	URB1	99	45.244	Oryctolagus_cuniculus
ENSSDUG00000012313	urb1	99	71.239	ENSORLG00000003429	urb1	99	71.239	Oryzias_latipes
ENSSDUG00000012313	urb1	99	70.835	ENSORLG00020013785	urb1	99	70.835	Oryzias_latipes_hni
ENSSDUG00000012313	urb1	93	75.766	ENSORLG00015019421	urb1	99	75.766	Oryzias_latipes_hsok
ENSSDUG00000012313	urb1	79	72.727	ENSOMEG00000002094	urb1	99	72.727	Oryzias_melastigma
ENSSDUG00000012313	urb1	99	44.672	ENSOGAG00000017140	URB1	99	44.682	Otolemur_garnettii
ENSSDUG00000012313	urb1	94	48.649	ENSOARG00000013679	URB1	99	48.170	Ovis_aries
ENSSDUG00000012313	urb1	99	44.956	ENSPPAG00000003423	URB1	99	44.826	Pan_paniscus
ENSSDUG00000012313	urb1	99	44.934	ENSPPRG00000023131	URB1	99	44.934	Panthera_pardus
ENSSDUG00000012313	urb1	88	46.448	ENSPTIG00000016125	URB1	94	46.448	Panthera_tigris_altaica
ENSSDUG00000012313	urb1	99	44.868	ENSPTRG00000013852	URB1	99	44.739	Pan_troglodytes
ENSSDUG00000012313	urb1	99	44.763	ENSPANG00000021964	URB1	99	45.024	Papio_anubis
ENSSDUG00000012313	urb1	99	55.166	ENSPKIG00000003683	urb1	99	55.259	Paramormyrops_kingsleyae
ENSSDUG00000012313	urb1	99	44.028	ENSPEMG00000021205	Urb1	99	44.038	Peromyscus_maniculatus_bairdii
ENSSDUG00000012313	urb1	80	32.561	ENSPMAG00000009733	URB1	99	33.352	Petromyzon_marinus
ENSSDUG00000012313	urb1	99	43.810	ENSPCIG00000016350	URB1	99	44.127	Phascolarctos_cinereus
ENSSDUG00000012313	urb1	97	72.420	ENSPLAG00000004371	urb1	100	72.420	Poecilia_latipinna
ENSSDUG00000012313	urb1	99	72.655	ENSPMEG00000006634	urb1	100	72.655	Poecilia_mexicana
ENSSDUG00000012313	urb1	99	72.281	ENSPREG00000013453	urb1	100	72.281	Poecilia_reticulata
ENSSDUG00000012313	urb1	99	44.522	ENSPPYG00000011359	URB1	99	44.517	Pongo_abelii
ENSSDUG00000012313	urb1	99	40.105	ENSPCAG00000007430	URB1	99	40.017	Procavia_capensis
ENSSDUG00000012313	urb1	100	44.551	ENSPCOG00000022695	URB1	99	44.556	Propithecus_coquereli
ENSSDUG00000012313	urb1	99	44.440	ENSPVAG00000000889	URB1	99	44.440	Pteropus_vampyrus
ENSSDUG00000012313	urb1	99	74.658	ENSPNYG00000010589	urb1	100	74.658	Pundamilia_nyererei
ENSSDUG00000012313	urb1	99	51.626	ENSPNAG00000019324	urb1	99	51.626	Pygocentrus_nattereri
ENSSDUG00000012313	urb1	99	43.875	ENSRNOG00000002080	Urb1	99	43.875	Rattus_norvegicus
ENSSDUG00000012313	urb1	99	44.609	ENSRBIG00000033122	URB1	99	44.870	Rhinopithecus_bieti
ENSSDUG00000012313	urb1	99	44.541	ENSRROG00000040237	URB1	99	44.802	Rhinopithecus_roxellana
ENSSDUG00000012313	urb1	99	44.855	ENSSBOG00000027672	URB1	99	44.784	Saimiri_boliviensis_boliviensis
ENSSDUG00000012313	urb1	99	44.502	ENSSHAG00000005140	URB1	100	44.546	Sarcophilus_harrisii
ENSSDUG00000012313	urb1	93	58.717	ENSSFOG00015000339	urb1	99	58.717	Scleropages_formosus
ENSSDUG00000012313	urb1	99	84.643	ENSSMAG00000003782	urb1	100	85.040	Scophthalmus_maximus
ENSSDUG00000012313	urb1	100	98.407	ENSSLDG00000023179	urb1	100	98.407	Seriola_lalandi_dorsalis
ENSSDUG00000012313	urb1	99	46.221	ENSSPUG00000012447	URB1	99	46.244	Sphenodon_punctatus
ENSSDUG00000012313	urb1	99	80.740	ENSSPAG00000006325	urb1	99	80.740	Stegastes_partitus
ENSSDUG00000012313	urb1	99	44.115	ENSSSCG00000032024	URB1	99	44.115	Sus_scrofa
ENSSDUG00000012313	urb1	74	49.139	ENSTGUG00000013442	URB1	100	49.139	Taeniopygia_guttata
ENSSDUG00000012313	urb1	99	73.505	ENSTRUG00000009372	urb1	99	73.505	Takifugu_rubripes
ENSSDUG00000012313	urb1	99	70.717	ENSTNIG00000016277	urb1	99	70.717	Tetraodon_nigroviridis
ENSSDUG00000012313	urb1	79	50.287	ENSTBEG00000010044	URB1	80	50.287	Tupaia_belangeri
ENSSDUG00000012313	urb1	88	51.475	ENSTTRG00000007712	URB1	91	50.310	Tursiops_truncatus
ENSSDUG00000012313	urb1	99	44.883	ENSUAMG00000012231	URB1	99	45.017	Ursus_americanus
ENSSDUG00000012313	urb1	87	47.271	ENSUMAG00000017419	URB1	93	47.271	Ursus_maritimus
ENSSDUG00000012313	urb1	67	61.600	ENSVPAG00000001164	URB1	67	61.600	Vicugna_pacos
ENSSDUG00000012313	urb1	99	44.764	ENSVVUG00000000551	URB1	99	44.764	Vulpes_vulpes
ENSSDUG00000012313	urb1	99	45.693	ENSXETG00000009895	urb1	99	45.349	Xenopus_tropicalis
ENSSDUG00000012313	urb1	99	68.405	ENSXCOG00000005500	urb1	99	70.857	Xiphophorus_couchianus
ENSSDUG00000012313	urb1	99	69.231	ENSXMAG00000007253	urb1	99	71.310	Xiphophorus_maculatus