EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000012320 (Gene tree)
Gene ID: 111221549
Gene Symbol: trnt1
Alias: zgc:86645
Full Name: tRNA nucleotidyl transferase 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 6732 bases
Position: chrBDQW01000088.1:6823536-6830267
Accession: 111221549
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000016888	PolyA_pol	PF01743.20	5.9e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000017194	-	3299	XM_022744989	ENSSDUP00000016888	426 (aa)	XP_022600710	UPI000BBF0043

Gene Model

Click here to download ENSSDUG00000012320's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000012320's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000012320	trnt1	99	66.824	ENSG00000072756	TRNT1	96	66.824	Homo_sapiens
ENSSDUG00000012320	trnt1	99	86.353	ENSAPOG00000013687	trnt1	99	86.353	Acanthochromis_polyacanthus
ENSSDUG00000012320	trnt1	99	66.276	ENSAMEG00000014520	TRNT1	98	66.276	Ailuropoda_melanoleuca
ENSSDUG00000012320	trnt1	100	90.610	ENSACIG00000021706	trnt1	99	90.610	Amphilophus_citrinellus
ENSSDUG00000012320	trnt1	100	88.967	ENSAOCG00000024612	trnt1	99	88.967	Amphiprion_ocellaris
ENSSDUG00000012320	trnt1	96	81.752	ENSAPEG00000022627	trnt1	95	81.752	Amphiprion_percula
ENSSDUG00000012320	trnt1	95	92.060	ENSATEG00000008928	trnt1	99	92.060	Anabas_testudineus
ENSSDUG00000012320	trnt1	95	65.509	ENSAPLG00000004258	TRNT1	99	65.509	Anas_platyrhynchos
ENSSDUG00000012320	trnt1	96	66.259	ENSACAG00000005657	TRNT1	93	66.259	Anolis_carolinensis
ENSSDUG00000012320	trnt1	95	68.473	ENSANAG00000024802	TRNT1	94	68.473	Aotus_nancymaae
ENSSDUG00000012320	trnt1	100	89.906	ENSACLG00000022227	trnt1	99	89.906	Astatotilapia_calliptera
ENSSDUG00000012320	trnt1	99	77.570	ENSAMXG00000003960	trnt1	99	77.570	Astyanax_mexicanus
ENSSDUG00000012320	trnt1	99	65.647	ENSBTAG00000019534	TRNT1	98	65.647	Bos_taurus
ENSSDUG00000012320	trnt1	95	43.826	WBGene00010089	hpo-31	94	43.826	Caenorhabditis_elegans
ENSSDUG00000012320	trnt1	95	68.719	ENSCJAG00000015466	TRNT1	94	68.719	Callithrix_jacchus
ENSSDUG00000012320	trnt1	95	68.719	ENSCAFG00000005985	TRNT1	93	68.719	Canis_familiaris
ENSSDUG00000012320	trnt1	95	68.719	ENSCAFG00020014746	TRNT1	93	68.719	Canis_lupus_dingo
ENSSDUG00000012320	trnt1	99	66.353	ENSCHIG00000007030	TRNT1	97	66.353	Capra_hircus
ENSSDUG00000012320	trnt1	99	66.588	ENSTSYG00000013390	TRNT1	98	66.588	Carlito_syrichta
ENSSDUG00000012320	trnt1	88	53.846	ENSCAPG00000006891	TRNT1	99	53.846	Cavia_aperea
ENSSDUG00000012320	trnt1	99	65.412	ENSCPOG00000007849	TRNT1	98	65.412	Cavia_porcellus
ENSSDUG00000012320	trnt1	96	67.073	ENSCCAG00000002919	TRNT1	98	68.193	Cebus_capucinus
ENSSDUG00000012320	trnt1	99	67.606	ENSCATG00000031985	TRNT1	97	67.606	Cercocebus_atys
ENSSDUG00000012320	trnt1	99	66.353	ENSCLAG00000005186	TRNT1	92	75.000	Chinchilla_lanigera
ENSSDUG00000012320	trnt1	99	67.606	ENSCSAG00000011052	TRNT1	98	67.606	Chlorocebus_sabaeus
ENSSDUG00000012320	trnt1	84	73.846	ENSCHOG00000005712	TRNT1	83	73.846	Choloepus_hoffmanni
ENSSDUG00000012320	trnt1	100	64.840	ENSCPBG00000017636	TRNT1	99	64.840	Chrysemys_picta_bellii
ENSSDUG00000012320	trnt1	95	41.728	ENSCING00000007069	-	99	41.728	Ciona_intestinalis
ENSSDUG00000012320	trnt1	94	41.337	ENSCSAVG00000007494	-	95	41.337	Ciona_savignyi
ENSSDUG00000012320	trnt1	99	67.840	ENSCANG00000039030	TRNT1	98	67.840	Colobus_angolensis_palliatus
ENSSDUG00000012320	trnt1	99	65.882	ENSCGRG00001009998	Trnt1	98	65.882	Cricetulus_griseus_chok1gshd
ENSSDUG00000012320	trnt1	99	65.882	ENSCGRG00000013410	Trnt1	94	74.372	Cricetulus_griseus_crigri
ENSSDUG00000012320	trnt1	100	86.150	ENSCSEG00000008157	trnt1	99	86.150	Cynoglossus_semilaevis
ENSSDUG00000012320	trnt1	100	85.211	ENSCVAG00000019770	trnt1	99	85.211	Cyprinodon_variegatus
ENSSDUG00000012320	trnt1	99	79.812	ENSDARG00000075297	trnt1	99	79.812	Danio_rerio
ENSSDUG00000012320	trnt1	99	67.529	ENSDNOG00000008837	TRNT1	98	67.529	Dasypus_novemcinctus
ENSSDUG00000012320	trnt1	99	66.512	ENSDORG00000014035	Trnt1	99	66.512	Dipodomys_ordii
ENSSDUG00000012320	trnt1	99	46.882	FBgn0037369	CG2100	89	46.882	Drosophila_melanogaster
ENSSDUG00000012320	trnt1	56	74.583	ENSETEG00000018177	TRNT1	96	74.583	Echinops_telfairi
ENSSDUG00000012320	trnt1	99	60.373	ENSEBUG00000012779	-	99	60.373	Eptatretus_burgeri
ENSSDUG00000012320	trnt1	99	67.765	ENSEASG00005003577	TRNT1	98	67.765	Equus_asinus_asinus
ENSSDUG00000012320	trnt1	99	68.000	ENSECAG00000014420	TRNT1	98	68.000	Equus_caballus
ENSSDUG00000012320	trnt1	99	67.059	ENSEEUG00000009567	TRNT1	97	67.059	Erinaceus_europaeus
ENSSDUG00000012320	trnt1	100	80.374	ENSELUG00000003802	trnt1	99	80.374	Esox_lucius
ENSSDUG00000012320	trnt1	99	66.353	ENSFCAG00000026805	TRNT1	97	66.353	Felis_catus
ENSSDUG00000012320	trnt1	90	68.146	ENSFALG00000013539	TRNT1	99	68.146	Ficedula_albicollis
ENSSDUG00000012320	trnt1	99	66.353	ENSFDAG00000018412	TRNT1	91	73.469	Fukomys_damarensis
ENSSDUG00000012320	trnt1	100	85.681	ENSFHEG00000019294	trnt1	99	85.681	Fundulus_heteroclitus
ENSSDUG00000012320	trnt1	99	81.925	ENSGMOG00000007460	trnt1	100	81.925	Gadus_morhua
ENSSDUG00000012320	trnt1	100	62.791	ENSGALG00000017368	TRNT1	99	62.791	Gallus_gallus
ENSSDUG00000012320	trnt1	100	83.803	ENSGAFG00000008647	trnt1	99	83.803	Gambusia_affinis
ENSSDUG00000012320	trnt1	100	87.324	ENSGACG00000011903	trnt1	99	87.324	Gasterosteus_aculeatus
ENSSDUG00000012320	trnt1	100	65.455	ENSGAGG00000020942	TRNT1	99	65.455	Gopherus_agassizii
ENSSDUG00000012320	trnt1	99	67.059	ENSGGOG00000015286	TRNT1	98	67.059	Gorilla_gorilla
ENSSDUG00000012320	trnt1	100	90.141	ENSHBUG00000002797	trnt1	99	90.141	Haplochromis_burtoni
ENSSDUG00000012320	trnt1	95	63.145	ENSHGLG00000000221	-	94	63.145	Heterocephalus_glaber_female
ENSSDUG00000012320	trnt1	99	65.647	ENSHGLG00000003649	TRNT1	98	65.647	Heterocephalus_glaber_female
ENSSDUG00000012320	trnt1	99	64.471	ENSHGLG00100016421	TRNT1	98	64.471	Heterocephalus_glaber_male
ENSSDUG00000012320	trnt1	100	79.343	ENSHCOG00000010618	trnt1	99	79.343	Hippocampus_comes
ENSSDUG00000012320	trnt1	99	77.103	ENSIPUG00000000971	trnt1	99	77.103	Ictalurus_punctatus
ENSSDUG00000012320	trnt1	96	66.912	ENSSTOG00000000150	TRNT1	86	79.888	Ictidomys_tridecemlineatus
ENSSDUG00000012320	trnt1	100	66.432	ENSJJAG00000018561	Trnt1	98	66.432	Jaculus_jaculus
ENSSDUG00000012320	trnt1	100	85.915	ENSKMAG00000011307	trnt1	99	85.915	Kryptolebias_marmoratus
ENSSDUG00000012320	trnt1	96	81.509	ENSLBEG00000019457	trnt1	97	81.509	Labrus_bergylta
ENSSDUG00000012320	trnt1	96	71.253	ENSLACG00000013227	TRNT1	94	71.253	Latimeria_chalumnae
ENSSDUG00000012320	trnt1	100	74.126	ENSLOCG00000011105	trnt1	98	74.126	Lepisosteus_oculatus
ENSSDUG00000012320	trnt1	99	67.529	ENSLAFG00000023191	TRNT1	98	67.529	Loxodonta_africana
ENSSDUG00000012320	trnt1	99	67.606	ENSMFAG00000045113	TRNT1	97	67.606	Macaca_fascicularis
ENSSDUG00000012320	trnt1	99	67.606	ENSMMUG00000017983	TRNT1	97	67.606	Macaca_mulatta
ENSSDUG00000012320	trnt1	99	67.606	ENSMNEG00000037805	TRNT1	97	67.606	Macaca_nemestrina
ENSSDUG00000012320	trnt1	90	69.895	ENSMLEG00000033671	TRNT1	99	69.895	Mandrillus_leucophaeus
ENSSDUG00000012320	trnt1	100	88.732	ENSMAMG00000023401	trnt1	99	88.732	Mastacembelus_armatus
ENSSDUG00000012320	trnt1	100	89.906	ENSMZEG00005009141	trnt1	99	89.906	Maylandia_zebra
ENSSDUG00000012320	trnt1	75	63.636	ENSMGAG00000009971	TRNT1	99	63.636	Meleagris_gallopavo
ENSSDUG00000012320	trnt1	99	65.647	ENSMAUG00000020707	Trnt1	98	65.647	Mesocricetus_auratus
ENSSDUG00000012320	trnt1	99	66.824	ENSMICG00000016615	TRNT1	98	66.824	Microcebus_murinus
ENSSDUG00000012320	trnt1	99	66.118	ENSMOCG00000004539	Trnt1	98	66.118	Microtus_ochrogaster
ENSSDUG00000012320	trnt1	100	87.089	ENSMMOG00000010742	trnt1	99	87.089	Mola_mola
ENSSDUG00000012320	trnt1	97	65.942	ENSMODG00000004368	TRNT1	95	65.942	Monodelphis_domestica
ENSSDUG00000012320	trnt1	100	86.854	ENSMALG00000008376	trnt1	99	86.854	Monopterus_albus
ENSSDUG00000012320	trnt1	99	66.118	MGP_CAROLIEiJ_G0028698	Trnt1	91	75.510	Mus_caroli
ENSSDUG00000012320	trnt1	99	65.882	ENSMUSG00000013736	Trnt1	91	75.510	Mus_musculus
ENSSDUG00000012320	trnt1	99	67.059	MGP_PahariEiJ_G0022449	Trnt1	97	76.531	Mus_pahari
ENSSDUG00000012320	trnt1	99	66.118	MGP_SPRETEiJ_G0029726	Trnt1	91	75.510	Mus_spretus
ENSSDUG00000012320	trnt1	97	66.908	ENSMPUG00000017017	TRNT1	95	66.908	Mustela_putorius_furo
ENSSDUG00000012320	trnt1	90	68.750	ENSMLUG00000011864	TRNT1	99	68.750	Myotis_lucifugus
ENSSDUG00000012320	trnt1	96	68.627	ENSNGAG00000000537	Trnt1	94	68.627	Nannospalax_galili
ENSSDUG00000012320	trnt1	81	89.595	ENSNBRG00000023606	trnt1	99	89.595	Neolamprologus_brichardi
ENSSDUG00000012320	trnt1	99	67.059	ENSNLEG00000003226	TRNT1	98	67.059	Nomascus_leucogenys
ENSSDUG00000012320	trnt1	97	65.942	ENSMEUG00000004684	TRNT1	95	65.942	Notamacropus_eugenii
ENSSDUG00000012320	trnt1	90	65.445	ENSOPRG00000015067	TRNT1	99	65.445	Ochotona_princeps
ENSSDUG00000012320	trnt1	99	66.588	ENSODEG00000007597	TRNT1	98	66.588	Octodon_degus
ENSSDUG00000012320	trnt1	100	90.376	ENSONIG00000020273	trnt1	98	90.376	Oreochromis_niloticus
ENSSDUG00000012320	trnt1	96	65.356	ENSOANG00000007514	TRNT1	94	65.356	Ornithorhynchus_anatinus
ENSSDUG00000012320	trnt1	95	66.502	ENSOCUG00000008580	TRNT1	94	66.502	Oryctolagus_cuniculus
ENSSDUG00000012320	trnt1	96	82.108	ENSORLG00000003165	trnt1	96	82.108	Oryzias_latipes
ENSSDUG00000012320	trnt1	96	82.108	ENSORLG00020022060	trnt1	96	82.108	Oryzias_latipes_hni
ENSSDUG00000012320	trnt1	96	82.108	ENSORLG00015018915	trnt1	96	82.108	Oryzias_latipes_hsok
ENSSDUG00000012320	trnt1	100	75.822	ENSOMEG00000003331	trnt1	99	75.822	Oryzias_melastigma
ENSSDUG00000012320	trnt1	99	66.353	ENSOARG00000008631	TRNT1	97	66.353	Ovis_aries
ENSSDUG00000012320	trnt1	99	66.824	ENSPPAG00000043566	TRNT1	98	66.824	Pan_paniscus
ENSSDUG00000012320	trnt1	99	66.353	ENSPPRG00000001327	TRNT1	97	66.353	Panthera_pardus
ENSSDUG00000012320	trnt1	99	66.353	ENSPTIG00000011448	TRNT1	97	66.353	Panthera_tigris_altaica
ENSSDUG00000012320	trnt1	99	66.824	ENSPTRG00000014564	TRNT1	98	66.824	Pan_troglodytes
ENSSDUG00000012320	trnt1	99	67.606	ENSPANG00000025944	TRNT1	97	67.606	Papio_anubis
ENSSDUG00000012320	trnt1	99	74.299	ENSPKIG00000020015	trnt1	99	74.299	Paramormyrops_kingsleyae
ENSSDUG00000012320	trnt1	93	68.354	ENSPSIG00000017356	TRNT1	99	69.081	Pelodiscus_sinensis
ENSSDUG00000012320	trnt1	100	80.282	ENSPMGG00000008888	trnt1	98	80.282	Periophthalmus_magnuspinnatus
ENSSDUG00000012320	trnt1	99	65.412	ENSPEMG00000019845	Trnt1	98	65.412	Peromyscus_maniculatus_bairdii
ENSSDUG00000012320	trnt1	99	65.485	ENSPCIG00000030436	TRNT1	97	65.485	Phascolarctos_cinereus
ENSSDUG00000012320	trnt1	99	83.924	ENSPFOG00000006194	trnt1	99	83.924	Poecilia_formosa
ENSSDUG00000012320	trnt1	99	83.924	ENSPLAG00000015623	trnt1	99	85.856	Poecilia_latipinna
ENSSDUG00000012320	trnt1	100	84.272	ENSPMEG00000012216	trnt1	99	86.104	Poecilia_mexicana
ENSSDUG00000012320	trnt1	100	83.333	ENSPREG00000021470	trnt1	99	83.333	Poecilia_reticulata
ENSSDUG00000012320	trnt1	99	66.588	ENSPPYG00000013702	TRNT1	98	66.588	Pongo_abelii
ENSSDUG00000012320	trnt1	90	70.681	ENSPCAG00000001951	TRNT1	99	70.681	Procavia_capensis
ENSSDUG00000012320	trnt1	99	66.824	ENSPCOG00000022228	TRNT1	98	66.824	Propithecus_coquereli
ENSSDUG00000012320	trnt1	90	68.848	ENSPVAG00000008784	TRNT1	99	68.848	Pteropus_vampyrus
ENSSDUG00000012320	trnt1	100	89.437	ENSPNYG00000003120	trnt1	99	89.437	Pundamilia_nyererei
ENSSDUG00000012320	trnt1	99	78.738	ENSPNAG00000000565	trnt1	99	78.738	Pygocentrus_nattereri
ENSSDUG00000012320	trnt1	99	66.353	ENSRNOG00000006432	Trnt1	98	66.353	Rattus_norvegicus
ENSSDUG00000012320	trnt1	99	66.667	ENSRBIG00000042632	TRNT1	98	66.667	Rhinopithecus_bieti
ENSSDUG00000012320	trnt1	99	67.606	ENSRROG00000036866	TRNT1	98	67.606	Rhinopithecus_roxellana
ENSSDUG00000012320	trnt1	95	68.719	ENSSBOG00000021208	TRNT1	94	68.719	Saimiri_boliviensis_boliviensis
ENSSDUG00000012320	trnt1	95	66.995	ENSSHAG00000018861	TRNT1	94	66.995	Sarcophilus_harrisii
ENSSDUG00000012320	trnt1	99	74.126	ENSSFOG00015020844	trnt1	99	74.126	Scleropages_formosus
ENSSDUG00000012320	trnt1	100	88.967	ENSSMAG00000015432	trnt1	98	88.967	Scophthalmus_maximus
ENSSDUG00000012320	trnt1	100	99.531	ENSSLDG00000009325	trnt1	100	99.531	Seriola_lalandi_dorsalis
ENSSDUG00000012320	trnt1	57	96.680	ENSSLDG00000016463	-	91	97.071	Seriola_lalandi_dorsalis
ENSSDUG00000012320	trnt1	90	70.681	ENSSPUG00000014153	TRNT1	99	70.681	Sphenodon_punctatus
ENSSDUG00000012320	trnt1	100	88.028	ENSSPAG00000021005	trnt1	99	88.028	Stegastes_partitus
ENSSDUG00000012320	trnt1	99	67.294	ENSSSCG00000011529	TRNT1	98	67.294	Sus_scrofa
ENSSDUG00000012320	trnt1	95	67.574	ENSTGUG00000010192	TRNT1	99	67.574	Taeniopygia_guttata
ENSSDUG00000012320	trnt1	100	84.272	ENSTRUG00000001088	trnt1	99	84.272	Takifugu_rubripes
ENSSDUG00000012320	trnt1	100	82.864	ENSTNIG00000007363	trnt1	98	82.864	Tetraodon_nigroviridis
ENSSDUG00000012320	trnt1	61	59.231	ENSTBEG00000006367	TRNT1	85	59.231	Tupaia_belangeri
ENSSDUG00000012320	trnt1	99	65.882	ENSTTRG00000007803	TRNT1	98	65.882	Tursiops_truncatus
ENSSDUG00000012320	trnt1	99	66.118	ENSUAMG00000022574	TRNT1	97	66.118	Ursus_americanus
ENSSDUG00000012320	trnt1	99	66.353	ENSUMAG00000024092	TRNT1	97	66.353	Ursus_maritimus
ENSSDUG00000012320	trnt1	95	68.719	ENSVVUG00000012810	TRNT1	93	68.719	Vulpes_vulpes
ENSSDUG00000012320	trnt1	98	60.238	ENSXETG00000025091	trnt1	99	61.194	Xenopus_tropicalis
ENSSDUG00000012320	trnt1	100	83.803	ENSXCOG00000010150	trnt1	99	83.803	Xiphophorus_couchianus
ENSSDUG00000012320	trnt1	100	84.038	ENSXMAG00000002227	trnt1	99	84.038	Xiphophorus_maculatus