EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000012380 (Gene tree)
Gene ID: 111224475
Gene Symbol: scaf4b
Alias: im:6900467|si:ch211-245g11.2
Full Name: splicing factor%2C arginine/serine-rich 15-like
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 25711 bases
Position: chrBDQW01000134.1:1268832-1294542
Accession: 111224475
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000016961	RRM_1	PF00076.22	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000017267	-	4238	XM_022748974	ENSSDUP00000016961	762 (aa)	XP_022604695	UPI000BBF1BED

Gene Model

Click here to download ENSSDUG00000012380's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000012380's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000012380	scaf4b	54	70.886	ENSG00000156304	SCAF4	57	61.290	Homo_sapiens
ENSSDUG00000012380	scaf4b	100	81.234	ENSAPOG00000019615	scaf4b	100	83.071	Acanthochromis_polyacanthus
ENSSDUG00000012380	scaf4b	100	83.333	ENSAOCG00000010433	scaf4b	100	83.596	Amphiprion_ocellaris
ENSSDUG00000012380	scaf4b	100	82.808	ENSAPEG00000010913	scaf4b	100	83.071	Amphiprion_percula
ENSSDUG00000012380	scaf4b	98	80.908	ENSATEG00000011758	scaf4b	100	82.109	Anabas_testudineus
ENSSDUG00000012380	scaf4b	63	65.152	ENSAPLG00000002509	SCAF4	52	57.265	Anas_platyrhynchos
ENSSDUG00000012380	scaf4b	54	70.886	ENSANAG00000037494	SCAF4	57	60.932	Aotus_nancymaae
ENSSDUG00000012380	scaf4b	100	77.428	ENSACLG00000024833	scaf4b	100	77.428	Astatotilapia_calliptera
ENSSDUG00000012380	scaf4b	54	70.886	ENSBTAG00000018855	SCAF4	57	62.007	Bos_taurus
ENSSDUG00000012380	scaf4b	54	70.886	ENSCJAG00000008993	SCAF4	61	61.649	Callithrix_jacchus
ENSSDUG00000012380	scaf4b	53	70.886	ENSCAFG00000008863	SCAF4	57	61.255	Canis_familiaris
ENSSDUG00000012380	scaf4b	52	70.886	ENSCAFG00020026019	SCAF4	61	60.886	Canis_lupus_dingo
ENSSDUG00000012380	scaf4b	54	70.886	ENSCHIG00000008385	SCAF4	57	62.007	Capra_hircus
ENSSDUG00000012380	scaf4b	51	78.417	ENSCPOG00000012443	SCAF4	63	60.595	Cavia_porcellus
ENSSDUG00000012380	scaf4b	54	70.886	ENSCCAG00000033727	SCAF4	75	47.059	Cebus_capucinus
ENSSDUG00000012380	scaf4b	54	70.886	ENSCATG00000030379	SCAF4	57	61.290	Cercocebus_atys
ENSSDUG00000012380	scaf4b	52	71.519	ENSCLAG00000006298	SCAF4	63	57.194	Chinchilla_lanigera
ENSSDUG00000012380	scaf4b	54	70.886	ENSCSAG00000009438	SCAF4	57	61.290	Chlorocebus_sabaeus
ENSSDUG00000012380	scaf4b	55	69.753	ENSCANG00000029847	SCAF4	57	61.290	Colobus_angolensis_palliatus
ENSSDUG00000012380	scaf4b	100	68.758	ENSCSEG00000012808	-	99	67.059	Cynoglossus_semilaevis
ENSSDUG00000012380	scaf4b	100	68.758	ENSCVAG00000009142	scaf4b	100	67.843	Cyprinodon_variegatus
ENSSDUG00000012380	scaf4b	51	72.535	ENSDARG00000018854	scaf4b	57	72.535	Danio_rerio
ENSSDUG00000012380	scaf4b	54	70.253	ENSDNOG00000019014	SCAF4	54	51.079	Dasypus_novemcinctus
ENSSDUG00000012380	scaf4b	66	49.379	ENSEBUG00000003891	SCAF8	68	49.175	Eptatretus_burgeri
ENSSDUG00000012380	scaf4b	54	70.886	ENSEASG00005007756	SCAF4	57	62.007	Equus_asinus_asinus
ENSSDUG00000012380	scaf4b	54	70.886	ENSECAG00000014248	SCAF4	57	62.007	Equus_caballus
ENSSDUG00000012380	scaf4b	51	61.735	ENSELUG00000002779	SCAF8	79	49.378	Esox_lucius
ENSSDUG00000012380	scaf4b	61	69.271	ENSELUG00000009909	scaf4a	53	69.378	Esox_lucius
ENSSDUG00000012380	scaf4b	54	70.886	ENSFCAG00000002228	SCAF4	57	63.004	Felis_catus
ENSSDUG00000012380	scaf4b	50	78.417	ENSFDAG00000017780	SCAF4	61	61.961	Fukomys_damarensis
ENSSDUG00000012380	scaf4b	100	71.859	ENSFHEG00000007634	scaf4b	100	72.120	Fundulus_heteroclitus
ENSSDUG00000012380	scaf4b	63	67.066	ENSGMOG00000015188	scaf4a	58	57.078	Gadus_morhua
ENSSDUG00000012380	scaf4b	54	67.296	ENSGACG00000020580	scaf4a	68	60.687	Gasterosteus_aculeatus
ENSSDUG00000012380	scaf4b	52	78.417	ENSHGLG00000010582	SCAF4	62	61.423	Heterocephalus_glaber_female
ENSSDUG00000012380	scaf4b	50	78.417	ENSHGLG00100009441	SCAF4	62	59.245	Heterocephalus_glaber_male
ENSSDUG00000012380	scaf4b	52	71.519	ENSSTOG00000004450	SCAF4	61	51.084	Ictidomys_tridecemlineatus
ENSSDUG00000012380	scaf4b	53	72.152	ENSJJAG00000019447	Scaf4	57	56.134	Jaculus_jaculus
ENSSDUG00000012380	scaf4b	100	74.869	ENSKMAG00000005742	scaf4b	100	75.000	Kryptolebias_marmoratus
ENSSDUG00000012380	scaf4b	74	57.895	ENSLACG00000013913	SCAF4	50	58.468	Latimeria_chalumnae
ENSSDUG00000012380	scaf4b	99	48.415	ENSLOCG00000009162	scaf4a	65	56.633	Lepisosteus_oculatus
ENSSDUG00000012380	scaf4b	59	70.440	ENSLAFG00000010710	SCAF4	64	54.908	Loxodonta_africana
ENSSDUG00000012380	scaf4b	54	70.886	ENSMFAG00000037668	SCAF4	57	61.290	Macaca_fascicularis
ENSSDUG00000012380	scaf4b	54	70.886	ENSMMUG00000001712	SCAF4	57	61.290	Macaca_mulatta
ENSSDUG00000012380	scaf4b	54	70.886	ENSMNEG00000032966	SCAF4	57	61.290	Macaca_nemestrina
ENSSDUG00000012380	scaf4b	53	70.886	ENSMLEG00000039674	SCAF4	56	60.223	Mandrillus_leucophaeus
ENSSDUG00000012380	scaf4b	52	71.519	ENSMAUG00000013307	Scaf4	64	58.214	Mesocricetus_auratus
ENSSDUG00000012380	scaf4b	54	70.886	ENSMICG00000005256	SCAF4	57	61.071	Microcebus_murinus
ENSSDUG00000012380	scaf4b	59	70.253	ENSMODG00000021040	SCAF4	53	56.587	Monodelphis_domestica
ENSSDUG00000012380	scaf4b	79	56.044	ENSMALG00000013825	scaf4a	51	59.259	Monopterus_albus
ENSSDUG00000012380	scaf4b	54	70.886	ENSMPUG00000001078	SCAF4	57	59.857	Mustela_putorius_furo
ENSSDUG00000012380	scaf4b	54	71.519	ENSNGAG00000005214	Scaf4	63	61.194	Nannospalax_galili
ENSSDUG00000012380	scaf4b	54	70.886	ENSNLEG00000003569	SCAF4	57	61.290	Nomascus_leucogenys
ENSSDUG00000012380	scaf4b	52	78.417	ENSODEG00000002718	SCAF4	60	60.595	Octodon_degus
ENSSDUG00000012380	scaf4b	71	64.882	ENSONIG00000005610	scaf4b	99	65.615	Oreochromis_niloticus
ENSSDUG00000012380	scaf4b	100	65.354	ENSORLG00000003420	scaf4b	100	64.829	Oryzias_latipes
ENSSDUG00000012380	scaf4b	100	65.400	ENSORLG00020013853	scaf4b	100	64.875	Oryzias_latipes_hni
ENSSDUG00000012380	scaf4b	52	70.886	ENSOGAG00000014653	SCAF4	53	53.532	Otolemur_garnettii
ENSSDUG00000012380	scaf4b	52	70.886	ENSOARG00000013894	SCAF4	56	60.440	Ovis_aries
ENSSDUG00000012380	scaf4b	54	70.886	ENSPPAG00000028535	SCAF4	57	61.290	Pan_paniscus
ENSSDUG00000012380	scaf4b	53	70.886	ENSPPRG00000000635	SCAF4	57	61.977	Panthera_pardus
ENSSDUG00000012380	scaf4b	54	70.886	ENSPTRG00000013848	SCAF4	57	61.290	Pan_troglodytes
ENSSDUG00000012380	scaf4b	54	70.886	ENSPANG00000017332	SCAF4	57	61.290	Papio_anubis
ENSSDUG00000012380	scaf4b	58	65.285	ENSPKIG00000022408	scaf4a	78	60.793	Paramormyrops_kingsleyae
ENSSDUG00000012380	scaf4b	57	69.427	ENSPSIG00000014242	SCAF4	50	56.356	Pelodiscus_sinensis
ENSSDUG00000012380	scaf4b	55	58.156	ENSPMAG00000006192	SCAF8	67	58.156	Petromyzon_marinus
ENSSDUG00000012380	scaf4b	83	69.395	ENSPFOG00000003261	scaf4b	78	69.286	Poecilia_formosa
ENSSDUG00000012380	scaf4b	100	66.709	ENSPLAG00000004403	-	100	65.578	Poecilia_latipinna
ENSSDUG00000012380	scaf4b	100	67.211	ENSPMEG00000006666	-	100	66.080	Poecilia_mexicana
ENSSDUG00000012380	scaf4b	100	66.625	ENSPREG00000013510	scaf4b	100	65.496	Poecilia_reticulata
ENSSDUG00000012380	scaf4b	54	70.886	ENSPPYG00000011355	SCAF4	57	61.290	Pongo_abelii
ENSSDUG00000012380	scaf4b	54	70.886	ENSPCOG00000018710	SCAF4	57	61.071	Propithecus_coquereli
ENSSDUG00000012380	scaf4b	54	72.152	ENSPVAG00000005220	SCAF4	57	62.230	Pteropus_vampyrus
ENSSDUG00000012380	scaf4b	100	77.297	ENSPNYG00000010526	scaf4b	100	77.297	Pundamilia_nyererei
ENSSDUG00000012380	scaf4b	54	71.519	ENSRNOG00000002104	Scaf4	51	62.771	Rattus_norvegicus
ENSSDUG00000012380	scaf4b	53	69.939	ENSRBIG00000040007	SCAF4	58	59.341	Rhinopithecus_bieti
ENSSDUG00000012380	scaf4b	54	70.886	ENSRROG00000029488	SCAF4	57	61.290	Rhinopithecus_roxellana
ENSSDUG00000012380	scaf4b	60	68.485	ENSSHAG00000001581	SCAF4	51	59.633	Sarcophilus_harrisii
ENSSDUG00000012380	scaf4b	100	87.156	ENSSMAG00000003738	scaf4b	100	87.156	Scophthalmus_maximus
ENSSDUG00000012380	scaf4b	100	99.738	ENSSLDG00000023152	-	100	99.738	Seriola_lalandi_dorsalis
ENSSDUG00000012380	scaf4b	51	76.978	ENSSARG00000009994	SCAF4	65	56.270	Sorex_araneus
ENSSDUG00000012380	scaf4b	50	78.417	ENSUMAG00000016962	SCAF4	78	48.915	Ursus_maritimus
ENSSDUG00000012380	scaf4b	52	70.886	ENSVVUG00000002953	SCAF4	57	61.132	Vulpes_vulpes
ENSSDUG00000012380	scaf4b	69	58.921	ENSXETG00000007351	scaf4	51	58.929	Xenopus_tropicalis