EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSSDUG00000012473 (Gene tree)
Gene ID: 111231043
Gene Symbol: -
Alias: -
Full Name: RNA-binding Raly-like protein
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Plus strand
Length: 46011 bases
Position: chrBDQW01000291.1:3396039-3442049
Accession: 111231043
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000017080	RRM_1	PF00076.22	8.5e-13	1	1
ENSSDUP00000017095	RRM_1	PF00076.22	8.5e-13	1	1
ENSSDUP00000017107	RRM_1	PF00076.22	9.7e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000017390	-	1846	-	ENSSDUP00000017080	292 (aa)	-	UPI000BBE69CB
ENSSDUT00000017405	-	1917	XM_022758001	ENSSDUP00000017095	292 (aa)	XP_022613722	UPI000BBE69CB
ENSSDUT00000017419	-	1879	XM_022758000	ENSSDUP00000017107	310 (aa)	XP_022613721	UPI000BBE0D86

Gene Model

Click here to download ENSSDUG00000012473's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000012473's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSSDUG00000012473	-	75	54.425	ENSSDUG00000006730	-	84	49.827
ENSSDUG00000012473	-	82	60.166	ENSSDUG00000002411	raly	96	53.535
ENSSDUG00000012473	-	95	49.301	ENSSDUG00000001723	-	87	45.659
ENSSDUG00000012473	-	100	73.649	ENSSDUG00000007587	-	100	73.649

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000012473	-	100	96.233	ENSAPOG00000008744	-	100	96.233	Acanthochromis_polyacanthus
ENSSDUG00000012473	-	97	86.598	ENSACIG00000007143	-	99	84.950	Amphilophus_citrinellus
ENSSDUG00000012473	-	100	98.973	ENSAOCG00000023599	-	100	98.973	Amphiprion_ocellaris
ENSSDUG00000012473	-	100	73.986	ENSAOCG00000001605	-	100	73.986	Amphiprion_ocellaris
ENSSDUG00000012473	-	82	74.895	ENSATEG00000023356	-	91	74.895	Anabas_testudineus
ENSSDUG00000012473	-	97	86.441	ENSATEG00000022219	-	95	89.439	Anabas_testudineus
ENSSDUG00000012473	-	100	72.973	ENSACLG00000006949	-	100	72.973	Astatotilapia_calliptera
ENSSDUG00000012473	-	100	97.260	ENSACLG00000011720	-	100	97.260	Astatotilapia_calliptera
ENSSDUG00000012473	-	100	72.973	ENSAMXG00000019031	-	100	72.973	Astyanax_mexicanus
ENSSDUG00000012473	-	100	64.310	ENSAMXG00000032617	-	100	64.983	Astyanax_mexicanus
ENSSDUG00000012473	-	100	83.219	ENSCSEG00000014237	-	100	83.219	Cynoglossus_semilaevis
ENSSDUG00000012473	-	100	73.649	ENSCVAG00000018104	-	100	73.986	Cyprinodon_variegatus
ENSSDUG00000012473	-	100	94.863	ENSCVAG00000013624	-	100	94.863	Cyprinodon_variegatus
ENSSDUG00000012473	-	59	77.193	ENSDARG00000090292	ralyl	81	80.247	Danio_rerio
ENSSDUG00000012473	-	93	63.636	ENSELUG00000001702	-	98	62.676	Esox_lucius
ENSSDUG00000012473	-	57	73.939	ENSGMOG00000005914	-	100	73.939	Gadus_morhua
ENSSDUG00000012473	-	61	79.775	ENSGACG00000004991	-	91	83.735	Gasterosteus_aculeatus
ENSSDUG00000012473	-	100	72.973	ENSHBUG00000015412	-	100	72.973	Haplochromis_burtoni
ENSSDUG00000012473	-	100	97.603	ENSHBUG00000010040	-	100	97.603	Haplochromis_burtoni
ENSSDUG00000012473	-	100	73.311	ENSIPUG00000000507	ralyl	100	73.986	Ictalurus_punctatus
ENSSDUG00000012473	-	100	73.311	ENSKMAG00000018155	-	100	74.324	Kryptolebias_marmoratus
ENSSDUG00000012473	-	100	91.438	ENSKMAG00000022093	-	100	92.123	Kryptolebias_marmoratus
ENSSDUG00000012473	-	100	92.123	ENSLBEG00000012873	-	100	92.123	Labrus_bergylta
ENSSDUG00000012473	-	100	71.622	ENSLBEG00000011011	-	100	72.973	Labrus_bergylta
ENSSDUG00000012473	-	100	70.270	ENSLOCG00000012787	ralyl	99	69.257	Lepisosteus_oculatus
ENSSDUG00000012473	-	99	90.345	ENSMAMG00000001723	-	97	90.345	Mastacembelus_armatus
ENSSDUG00000012473	-	100	97.260	ENSMZEG00005024447	-	100	97.260	Maylandia_zebra
ENSSDUG00000012473	-	98	70.508	ENSMZEG00005018748	-	99	71.284	Maylandia_zebra
ENSSDUG00000012473	-	97	85.811	ENSMMOG00000020441	-	86	88.176	Mola_mola
ENSSDUG00000012473	-	100	72.297	ENSMALG00000012952	-	100	72.297	Monopterus_albus
ENSSDUG00000012473	-	100	95.548	ENSMALG00000019019	-	78	95.548	Monopterus_albus
ENSSDUG00000012473	-	98	70.847	ENSNBRG00000011376	-	99	71.284	Neolamprologus_brichardi
ENSSDUG00000012473	-	97	86.254	ENSNBRG00000011206	-	99	84.615	Neolamprologus_brichardi
ENSSDUG00000012473	-	100	73.986	ENSORLG00000012719	-	100	73.986	Oryzias_latipes
ENSSDUG00000012473	-	100	90.068	ENSORLG00000017934	-	100	89.726	Oryzias_latipes
ENSSDUG00000012473	-	100	89.041	ENSORLG00020000082	-	100	88.699	Oryzias_latipes_hni
ENSSDUG00000012473	-	100	73.986	ENSORLG00020004438	-	100	73.986	Oryzias_latipes_hni
ENSSDUG00000012473	-	100	73.986	ENSORLG00015004727	-	100	73.986	Oryzias_latipes_hsok
ENSSDUG00000012473	-	100	89.384	ENSORLG00015004280	-	100	89.041	Oryzias_latipes_hsok
ENSSDUG00000012473	-	100	73.986	ENSOMEG00000001170	-	100	73.986	Oryzias_melastigma
ENSSDUG00000012473	-	100	89.041	ENSOMEG00000011821	-	100	89.041	Oryzias_melastigma
ENSSDUG00000012473	-	100	73.720	ENSPKIG00000015926	-	100	73.720	Paramormyrops_kingsleyae
ENSSDUG00000012473	-	78	68.240	ENSPMGG00000014481	-	95	70.259	Periophthalmus_magnuspinnatus
ENSSDUG00000012473	-	99	76.689	ENSPMGG00000009532	-	99	75.000	Periophthalmus_magnuspinnatus
ENSSDUG00000012473	-	97	89.796	ENSPFOG00000006120	-	99	89.796	Poecilia_formosa
ENSSDUG00000012473	-	97	73.103	ENSPLAG00000011323	ralyl	100	73.103	Poecilia_latipinna
ENSSDUG00000012473	-	97	85.563	ENSPLAG00000009877	-	76	84.965	Poecilia_latipinna
ENSSDUG00000012473	-	97	85.563	ENSPMEG00000013624	-	80	84.965	Poecilia_mexicana
ENSSDUG00000012473	-	97	73.103	ENSPMEG00000023847	ralyl	100	73.103	Poecilia_mexicana
ENSSDUG00000012473	-	97	94.346	ENSPREG00000013805	-	100	88.462	Poecilia_reticulata
ENSSDUG00000012473	-	97	71.724	ENSPREG00000001956	ralyl	100	72.414	Poecilia_reticulata
ENSSDUG00000012473	-	97	86.254	ENSPNYG00000008772	-	99	84.615	Pundamilia_nyererei
ENSSDUG00000012473	-	98	70.508	ENSPNYG00000003548	-	99	71.284	Pundamilia_nyererei
ENSSDUG00000012473	-	100	68.151	ENSPNAG00000026098	-	100	68.151	Pygocentrus_nattereri
ENSSDUG00000012473	-	100	72.635	ENSPNAG00000000498	-	88	72.391	Pygocentrus_nattereri
ENSSDUG00000012473	-	97	65.385	ENSSFOG00015004575	-	96	65.965	Scleropages_formosus
ENSSDUG00000012473	-	100	75.000	ENSSFOG00015009401	-	100	75.000	Scleropages_formosus
ENSSDUG00000012473	-	97	90.877	ENSSMAG00000015907	-	93	90.877	Scophthalmus_maximus
ENSSDUG00000012473	-	100	72.635	ENSSMAG00000005608	-	100	73.737	Scophthalmus_maximus
ENSSDUG00000012473	-	100	73.064	ENSSLDG00000020603	-	100	72.973	Seriola_lalandi_dorsalis
ENSSDUG00000012473	-	100	99.658	ENSSLDG00000011534	-	100	99.658	Seriola_lalandi_dorsalis
ENSSDUG00000012473	-	97	81.272	ENSSPAG00000013858	-	96	79.110	Stegastes_partitus
ENSSDUG00000012473	-	97	90.106	ENSTRUG00000003829	-	98	86.254	Takifugu_rubripes
ENSSDUG00000012473	-	97	85.034	ENSTNIG00000005594	-	99	85.034	Tetraodon_nigroviridis
ENSSDUG00000012473	-	100	64.765	ENSXETG00000017729	ralyl	99	65.436	Xenopus_tropicalis
ENSSDUG00000012473	-	97	70.805	ENSXCOG00000015156	-	93	70.805	Xiphophorus_couchianus
ENSSDUG00000012473	-	100	74.324	ENSXMAG00000008396	-	100	74.324	Xiphophorus_maculatus
ENSSDUG00000012473	-	100	94.521	ENSXMAG00000007614	-	100	94.521	Xiphophorus_maculatus