EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSSDUG00000012625 (Gene tree)
Gene ID: 111240456
Gene Symbol: crnkl1
Alias: zgc:55327
Full Name: crooked neck pre-mRNA splicing factor 1
Gene Type: protein_coding
Species: Seriola_dumerili
Status: putative
Strand: Minus strand
Length: 6189 bases
Position: chrBDQW01000025.1:23310948-23317136
Accession: 111240456
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSSDUP00000017304	HAT	PF02184.16	1.6e-29	1	2
ENSSDUP00000017304	HAT	PF02184.16	1.6e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSSDUT00000017619	-	2235	XM_022770476	ENSSDUP00000017304	744 (aa)	XP_022626197	-

Gene Model

Click here to download ENSSDUG00000012625's gene model file

Pathways

Pathway ID	Pathway Name	Source
sdu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSSDUG00000012625's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSSDUG00000012625	crnkl1	87	79.794	ENSG00000101343	CRNKL1	99	79.009	Homo_sapiens
ENSSDUG00000012625	crnkl1	99	84.685	ENSAPOG00000009705	crnkl1	99	88.517	Acanthochromis_polyacanthus
ENSSDUG00000012625	crnkl1	86	80.267	ENSAMEG00000000270	CRNKL1	82	80.412	Ailuropoda_melanoleuca
ENSSDUG00000012625	crnkl1	92	84.615	ENSACIG00000015267	crnkl1	94	84.844	Amphilophus_citrinellus
ENSSDUG00000012625	crnkl1	92	86.944	ENSAOCG00000021964	crnkl1	94	87.306	Amphiprion_ocellaris
ENSSDUG00000012625	crnkl1	92	86.944	ENSAPEG00000015041	crnkl1	94	87.306	Amphiprion_percula
ENSSDUG00000012625	crnkl1	99	83.742	ENSATEG00000001068	crnkl1	93	86.987	Anabas_testudineus
ENSSDUG00000012625	crnkl1	85	79.549	ENSAPLG00000013105	CRNKL1	99	78.088	Anas_platyrhynchos
ENSSDUG00000012625	crnkl1	87	80.560	ENSACAG00000005284	CRNKL1	99	80.560	Anolis_carolinensis
ENSSDUG00000012625	crnkl1	81	80.032	ENSANAG00000024889	CRNKL1	99	80.032	Aotus_nancymaae
ENSSDUG00000012625	crnkl1	92	83.956	ENSACLG00000010813	crnkl1	93	84.823	Astatotilapia_calliptera
ENSSDUG00000012625	crnkl1	85	84.985	ENSAMXG00000018334	crnkl1	94	81.883	Astyanax_mexicanus
ENSSDUG00000012625	crnkl1	88	79.450	ENSBTAG00000008472	CRNKL1	99	79.450	Bos_taurus
ENSSDUG00000012625	crnkl1	82	59.253	WBGene00019762	M03F8.3	91	57.880	Caenorhabditis_elegans
ENSSDUG00000012625	crnkl1	87	79.794	ENSCJAG00000005393	CRNKL1	99	79.009	Callithrix_jacchus
ENSSDUG00000012625	crnkl1	86	80.267	ENSCAFG00000005333	CRNKL1	93	80.412	Canis_familiaris
ENSSDUG00000012625	crnkl1	87	80.412	ENSCAFG00020027488	CRNKL1	99	80.412	Canis_lupus_dingo
ENSSDUG00000012625	crnkl1	88	79.740	ENSCHIG00000013171	CRNKL1	99	79.740	Capra_hircus
ENSSDUG00000012625	crnkl1	87	79.676	ENSTSYG00000004197	CRNKL1	99	79.009	Carlito_syrichta
ENSSDUG00000012625	crnkl1	79	76.849	ENSCAPG00000010501	CRNKL1	99	76.849	Cavia_aperea
ENSSDUG00000012625	crnkl1	87	79.823	ENSCPOG00000004418	CRNKL1	99	79.155	Cavia_porcellus
ENSSDUG00000012625	crnkl1	87	79.941	ENSCCAG00000027037	CRNKL1	99	79.155	Cebus_capucinus
ENSSDUG00000012625	crnkl1	87	79.646	ENSCATG00000034247	CRNKL1	99	78.863	Cercocebus_atys
ENSSDUG00000012625	crnkl1	87	80.265	ENSCLAG00000013859	CRNKL1	99	80.265	Chinchilla_lanigera
ENSSDUG00000012625	crnkl1	87	79.646	ENSCSAG00000011434	CRNKL1	99	78.863	Chlorocebus_sabaeus
ENSSDUG00000012625	crnkl1	86	79.674	ENSCHOG00000006371	CRNKL1	83	79.823	Choloepus_hoffmanni
ENSSDUG00000012625	crnkl1	87	80.441	ENSCPBG00000023501	CRNKL1	100	79.767	Chrysemys_picta_bellii
ENSSDUG00000012625	crnkl1	85	63.759	ENSCING00000002709	-	98	63.244	Ciona_intestinalis
ENSSDUG00000012625	crnkl1	87	79.646	ENSCANG00000038789	CRNKL1	99	79.646	Colobus_angolensis_palliatus
ENSSDUG00000012625	crnkl1	88	79.330	ENSCGRG00001001115	-	99	79.330	Cricetulus_griseus_chok1gshd
ENSSDUG00000012625	crnkl1	88	79.330	ENSCGRG00001000687	-	99	79.330	Cricetulus_griseus_chok1gshd
ENSSDUG00000012625	crnkl1	88	79.330	ENSCGRG00000007854	Crnkl1	99	79.330	Cricetulus_griseus_crigri
ENSSDUG00000012625	crnkl1	97	80.871	ENSCSEG00000005594	crnkl1	89	85.149	Cynoglossus_semilaevis
ENSSDUG00000012625	crnkl1	92	83.613	ENSCVAG00000015172	crnkl1	95	83.639	Cyprinodon_variegatus
ENSSDUG00000012625	crnkl1	89	80.254	ENSDARG00000007901	crnkl1	94	80.536	Danio_rerio
ENSSDUG00000012625	crnkl1	87	80.265	ENSDNOG00000016226	CRNKL1	94	80.265	Dasypus_novemcinctus
ENSSDUG00000012625	crnkl1	86	74.179	ENSDORG00000023724	-	99	74.179	Dipodomys_ordii
ENSSDUG00000012625	crnkl1	86	73.661	ENSDORG00000030174	-	99	73.661	Dipodomys_ordii
ENSSDUG00000012625	crnkl1	87	78.363	ENSDORG00000000394	-	99	78.363	Dipodomys_ordii
ENSSDUG00000012625	crnkl1	86	63.166	FBgn0000377	crn	99	61.615	Drosophila_melanogaster
ENSSDUG00000012625	crnkl1	85	70.015	ENSETEG00000003711	CRNKL1	81	70.015	Echinops_telfairi
ENSSDUG00000012625	crnkl1	86	53.680	ENSEBUG00000013461	crnkl1	95	50.837	Eptatretus_burgeri
ENSSDUG00000012625	crnkl1	87	80.412	ENSEASG00005002072	CRNKL1	99	80.412	Equus_asinus_asinus
ENSSDUG00000012625	crnkl1	87	80.412	ENSECAG00000022215	CRNKL1	99	80.412	Equus_caballus
ENSSDUG00000012625	crnkl1	86	77.300	ENSEEUG00000000413	CRNKL1	91	77.467	Erinaceus_europaeus
ENSSDUG00000012625	crnkl1	86	84.799	ENSELUG00000015424	crnkl1	96	84.071	Esox_lucius
ENSSDUG00000012625	crnkl1	87	80.412	ENSFCAG00000000714	CRNKL1	99	79.738	Felis_catus
ENSSDUG00000012625	crnkl1	85	78.797	ENSFALG00000004611	CRNKL1	99	78.797	Ficedula_albicollis
ENSSDUG00000012625	crnkl1	87	80.412	ENSFDAG00000000604	CRNKL1	99	80.412	Fukomys_damarensis
ENSSDUG00000012625	crnkl1	99	79.284	ENSFHEG00000013163	crnkl1	92	83.803	Fundulus_heteroclitus
ENSSDUG00000012625	crnkl1	85	83.683	ENSGMOG00000007609	crnkl1	94	82.242	Gadus_morhua
ENSSDUG00000012625	crnkl1	87	80.147	ENSGALG00000008429	CRNKL1	99	80.147	Gallus_gallus
ENSSDUG00000012625	crnkl1	96	81.367	ENSGAFG00000014249	crnkl1	93	83.898	Gambusia_affinis
ENSSDUG00000012625	crnkl1	90	83.194	ENSGACG00000011852	crnkl1	96	83.194	Gasterosteus_aculeatus
ENSSDUG00000012625	crnkl1	83	80.000	ENSGAGG00000021233	CRNKL1	100	79.300	Gopherus_agassizii
ENSSDUG00000012625	crnkl1	87	79.794	ENSGGOG00000014176	CRNKL1	99	79.009	Gorilla_gorilla
ENSSDUG00000012625	crnkl1	97	81.950	ENSHBUG00000005246	crnkl1	93	84.965	Haplochromis_burtoni
ENSSDUG00000012625	crnkl1	88	79.738	ENSHGLG00000010856	CRNKL1	99	79.738	Heterocephalus_glaber_female
ENSSDUG00000012625	crnkl1	88	79.738	ENSHGLG00100011521	CRNKL1	99	79.738	Heterocephalus_glaber_male
ENSSDUG00000012625	crnkl1	85	84.581	ENSHCOG00000006420	crnkl1	97	84.398	Hippocampus_comes
ENSSDUG00000012625	crnkl1	88	80.029	ENSIPUG00000006751	crnkl1	95	80.058	Ictalurus_punctatus
ENSSDUG00000012625	crnkl1	81	66.132	ENSIPUG00000000315	-	99	67.363	Ictalurus_punctatus
ENSSDUG00000012625	crnkl1	85	72.588	ENSIPUG00000006836	-	97	72.519	Ictalurus_punctatus
ENSSDUG00000012625	crnkl1	87	80.265	ENSSTOG00000014747	CRNKL1	99	79.592	Ictidomys_tridecemlineatus
ENSSDUG00000012625	crnkl1	87	78.818	ENSJJAG00000016926	Crnkl1	99	78.818	Jaculus_jaculus
ENSSDUG00000012625	crnkl1	93	84.232	ENSKMAG00000003620	crnkl1	91	84.572	Kryptolebias_marmoratus
ENSSDUG00000012625	crnkl1	88	74.398	ENSLBEG00000003543	crnkl1	93	75.000	Labrus_bergylta
ENSSDUG00000012625	crnkl1	86	82.344	ENSLACG00000001129	CRNKL1	98	82.344	Latimeria_chalumnae
ENSSDUG00000012625	crnkl1	85	84.985	ENSLOCG00000016889	crnkl1	99	80.699	Lepisosteus_oculatus
ENSSDUG00000012625	crnkl1	87	79.559	ENSLAFG00000004512	CRNKL1	99	79.622	Loxodonta_africana
ENSSDUG00000012625	crnkl1	87	79.646	ENSMFAG00000039893	CRNKL1	99	78.863	Macaca_fascicularis
ENSSDUG00000012625	crnkl1	87	79.646	ENSMMUG00000007709	CRNKL1	99	78.863	Macaca_mulatta
ENSSDUG00000012625	crnkl1	87	79.646	ENSMNEG00000037490	CRNKL1	99	78.863	Macaca_nemestrina
ENSSDUG00000012625	crnkl1	87	79.646	ENSMLEG00000034885	CRNKL1	99	78.863	Mandrillus_leucophaeus
ENSSDUG00000012625	crnkl1	92	84.874	ENSMAMG00000008757	crnkl1	93	84.866	Mastacembelus_armatus
ENSSDUG00000012625	crnkl1	97	82.119	ENSMZEG00005022345	crnkl1	93	84.823	Maylandia_zebra
ENSSDUG00000012625	crnkl1	87	79.736	ENSMGAG00000003452	CRNKL1	93	79.736	Meleagris_gallopavo
ENSSDUG00000012625	crnkl1	88	79.330	ENSMAUG00000020764	Crnkl1	99	79.330	Mesocricetus_auratus
ENSSDUG00000012625	crnkl1	87	79.971	ENSMICG00000006048	CRNKL1	99	79.300	Microcebus_murinus
ENSSDUG00000012625	crnkl1	88	71.920	ENSMOCG00000000681	-	99	71.920	Microtus_ochrogaster
ENSSDUG00000012625	crnkl1	85	61.360	ENSMOCG00000004179	-	95	61.290	Microtus_ochrogaster
ENSSDUG00000012625	crnkl1	81	84.518	ENSMMOG00000017601	crnkl1	97	84.518	Mola_mola
ENSSDUG00000012625	crnkl1	87	74.559	ENSMODG00000010857	-	98	74.559	Monodelphis_domestica
ENSSDUG00000012625	crnkl1	87	78.166	ENSMODG00000005961	-	99	77.522	Monodelphis_domestica
ENSSDUG00000012625	crnkl1	91	59.104	ENSMALG00000011211	crnkl1	93	60.900	Monopterus_albus
ENSSDUG00000012625	crnkl1	88	79.330	MGP_CAROLIEiJ_G0024394	Crnkl1	99	79.330	Mus_caroli
ENSSDUG00000012625	crnkl1	88	79.330	ENSMUSG00000001767	Crnkl1	99	79.330	Mus_musculus
ENSSDUG00000012625	crnkl1	87	78.940	MGP_PahariEiJ_G0025838	Crnkl1	99	78.166	Mus_pahari
ENSSDUG00000012625	crnkl1	88	79.330	MGP_SPRETEiJ_G0025312	Crnkl1	99	79.330	Mus_spretus
ENSSDUG00000012625	crnkl1	87	80.412	ENSMPUG00000001226	CRNKL1	99	79.738	Mustela_putorius_furo
ENSSDUG00000012625	crnkl1	86	80.119	ENSMLUG00000016513	CRNKL1	88	80.265	Myotis_lucifugus
ENSSDUG00000012625	crnkl1	87	78.582	ENSNGAG00000023097	Crnkl1	99	77.937	Nannospalax_galili
ENSSDUG00000012625	crnkl1	92	84.094	ENSNBRG00000007867	crnkl1	92	84.965	Neolamprologus_brichardi
ENSSDUG00000012625	crnkl1	87	77.876	ENSNLEG00000009862	CRNKL1	99	77.114	Nomascus_leucogenys
ENSSDUG00000012625	crnkl1	87	75.405	ENSMEUG00000002361	-	98	75.405	Notamacropus_eugenii
ENSSDUG00000012625	crnkl1	85	80.271	ENSMEUG00000012167	-	100	79.583	Notamacropus_eugenii
ENSSDUG00000012625	crnkl1	75	52.031	ENSOPRG00000009242	-	61	52.031	Ochotona_princeps
ENSSDUG00000012625	crnkl1	87	79.971	ENSODEG00000012175	CRNKL1	99	79.971	Octodon_degus
ENSSDUG00000012625	crnkl1	92	84.371	ENSONIG00000018728	crnkl1	93	84.669	Oreochromis_niloticus
ENSSDUG00000012625	crnkl1	86	79.142	ENSOCUG00000015484	CRNKL1	82	79.883	Oryctolagus_cuniculus
ENSSDUG00000012625	crnkl1	92	81.641	ENSORLG00000017240	crnkl1	98	79.745	Oryzias_latipes
ENSSDUG00000012625	crnkl1	92	81.616	ENSORLG00020001742	crnkl1	95	81.627	Oryzias_latipes_hni
ENSSDUG00000012625	crnkl1	92	81.553	ENSORLG00015019564	crnkl1	95	81.690	Oryzias_latipes_hsok
ENSSDUG00000012625	crnkl1	92	82.893	ENSOMEG00000019895	crnkl1	95	82.312	Oryzias_melastigma
ENSSDUG00000012625	crnkl1	88	79.300	ENSOGAG00000011544	CRNKL1	99	79.300	Otolemur_garnettii
ENSSDUG00000012625	crnkl1	88	79.446	ENSOARG00000002150	CRNKL1	90	79.595	Ovis_aries
ENSSDUG00000012625	crnkl1	86	79.792	ENSPPAG00000027847	CRNKL1	82	79.941	Pan_paniscus
ENSSDUG00000012625	crnkl1	87	80.412	ENSPPRG00000001955	CRNKL1	99	79.738	Panthera_pardus
ENSSDUG00000012625	crnkl1	87	80.412	ENSPTIG00000007393	CRNKL1	99	79.738	Panthera_tigris_altaica
ENSSDUG00000012625	crnkl1	87	79.794	ENSPTRG00000030609	CRNKL1	99	79.009	Pan_troglodytes
ENSSDUG00000012625	crnkl1	87	79.646	ENSPANG00000017420	CRNKL1	99	78.863	Papio_anubis
ENSSDUG00000012625	crnkl1	85	85.135	ENSPKIG00000017093	crnkl1	95	79.589	Paramormyrops_kingsleyae
ENSSDUG00000012625	crnkl1	87	79.321	ENSPSIG00000012705	CRNKL1	99	78.655	Pelodiscus_sinensis
ENSSDUG00000012625	crnkl1	89	76.081	ENSPMGG00000006263	crnkl1	97	76.081	Periophthalmus_magnuspinnatus
ENSSDUG00000012625	crnkl1	88	79.622	ENSPEMG00000000073	-	99	79.622	Peromyscus_maniculatus_bairdii
ENSSDUG00000012625	crnkl1	85	76.497	ENSPMAG00000002250	crnkl1	97	76.497	Petromyzon_marinus
ENSSDUG00000012625	crnkl1	87	80.265	ENSPCIG00000025825	CRNKL1	95	80.265	Phascolarctos_cinereus
ENSSDUG00000012625	crnkl1	92	82.754	ENSPFOG00000005102	crnkl1	96	83.593	Poecilia_formosa
ENSSDUG00000012625	crnkl1	92	82.312	ENSPLAG00000007288	crnkl1	92	83.333	Poecilia_latipinna
ENSSDUG00000012625	crnkl1	86	86.736	ENSPMEG00000008865	crnkl1	97	82.913	Poecilia_mexicana
ENSSDUG00000012625	crnkl1	86	86.697	ENSPREG00000012615	crnkl1	97	81.944	Poecilia_reticulata
ENSSDUG00000012625	crnkl1	86	79.495	ENSPPYG00000010747	CRNKL1	80	79.646	Pongo_abelii
ENSSDUG00000012625	crnkl1	86	77.286	ENSPCAG00000003296	CRNKL1	85	76.812	Procavia_capensis
ENSSDUG00000012625	crnkl1	86	78.932	ENSPCOG00000017608	CRNKL1	82	79.087	Propithecus_coquereli
ENSSDUG00000012625	crnkl1	86	80.267	ENSPVAG00000006207	CRNKL1	82	80.412	Pteropus_vampyrus
ENSSDUG00000012625	crnkl1	92	83.817	ENSPNYG00000001977	crnkl1	93	84.681	Pundamilia_nyererei
ENSSDUG00000012625	crnkl1	91	81.549	ENSPNAG00000001507	crnkl1	99	80.174	Pygocentrus_nattereri
ENSSDUG00000012625	crnkl1	88	79.330	ENSRNOG00000010587	Crnkl1	99	79.330	Rattus_norvegicus
ENSSDUG00000012625	crnkl1	87	79.971	ENSRNOG00000040045	Crnkl1	99	79.185	Rattus_norvegicus
ENSSDUG00000012625	crnkl1	88	78.863	ENSRBIG00000031770	CRNKL1	99	78.863	Rhinopithecus_bieti
ENSSDUG00000012625	crnkl1	88	78.863	ENSRROG00000040450	CRNKL1	99	78.863	Rhinopithecus_roxellana
ENSSDUG00000012625	crnkl1	83	34.682	YLR117C	CLF1	99	34.682	Saccharomyces_cerevisiae
ENSSDUG00000012625	crnkl1	87	79.794	ENSSBOG00000029672	CRNKL1	99	79.794	Saimiri_boliviensis_boliviensis
ENSSDUG00000012625	crnkl1	84	65.046	ENSSHAG00000011199	CRNKL1	99	65.046	Sarcophilus_harrisii
ENSSDUG00000012625	crnkl1	85	83.584	ENSSFOG00015000946	crnkl1	87	83.383	Scleropages_formosus
ENSSDUG00000012625	crnkl1	92	83.220	ENSSMAG00000007933	crnkl1	93	83.518	Scophthalmus_maximus
ENSSDUG00000012625	crnkl1	93	94.236	ENSSLDG00000021413	crnkl1	91	94.083	Seriola_lalandi_dorsalis
ENSSDUG00000012625	crnkl1	87	79.381	ENSSARG00000006443	CRNKL1	81	79.381	Sorex_araneus
ENSSDUG00000012625	crnkl1	91	77.825	ENSSPUG00000005254	CRNKL1	99	80.294	Sphenodon_punctatus
ENSSDUG00000012625	crnkl1	92	86.389	ENSSPAG00000016150	crnkl1	91	86.601	Stegastes_partitus
ENSSDUG00000012625	crnkl1	89	79.335	ENSSSCG00000038587	CRNKL1	99	79.335	Sus_scrofa
ENSSDUG00000012625	crnkl1	87	79.589	ENSTGUG00000007645	CRNKL1	98	79.589	Taeniopygia_guttata
ENSSDUG00000012625	crnkl1	92	75.104	ENSTRUG00000015417	crnkl1	93	76.346	Takifugu_rubripes
ENSSDUG00000012625	crnkl1	86	83.408	ENSTNIG00000010710	crnkl1	99	81.621	Tetraodon_nigroviridis
ENSSDUG00000012625	crnkl1	80	78.275	ENSTBEG00000001304	CRNKL1	82	78.447	Tupaia_belangeri
ENSSDUG00000012625	crnkl1	80	76.038	ENSTTRG00000000484	CRNKL1	81	76.228	Tursiops_truncatus
ENSSDUG00000012625	crnkl1	87	80.412	ENSUAMG00000018586	CRNKL1	99	79.738	Ursus_americanus
ENSSDUG00000012625	crnkl1	87	80.412	ENSUMAG00000024957	CRNKL1	99	79.738	Ursus_maritimus
ENSSDUG00000012625	crnkl1	86	80.267	ENSVVUG00000012559	CRNKL1	81	80.412	Vulpes_vulpes
ENSSDUG00000012625	crnkl1	88	79.767	ENSXETG00000009698	crnkl1	99	79.767	Xenopus_tropicalis
ENSSDUG00000012625	crnkl1	86	87.332	ENSXCOG00000000824	crnkl1	96	83.636	Xiphophorus_couchianus
ENSSDUG00000012625	crnkl1	92	82.386	ENSXMAG00000006896	crnkl1	96	83.077	Xiphophorus_maculatus